Wall clock time and date at job start Wed Apr 1 2020 05:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46894 * 2 1 4 4 O 1.42902 * 109.46935 * 119.99613 * 2 1 3 5 5 C 1.35911 * 117.00311 * 280.10720 * 4 2 1 6 6 C 1.39142 * 120.46987 * 358.56468 * 5 4 2 7 7 C 1.38537 * 118.37224 * 179.97438 * 6 5 4 8 8 C 1.38260 * 119.22284 * 359.97438 * 7 6 5 9 9 N 1.31841 * 120.88509 * 0.02562 * 8 7 6 10 10 C 1.31846 * 121.78181 * 359.97438 * 9 8 7 11 11 C 1.50693 * 109.47169 * 239.99877 * 2 1 3 12 12 O 1.21285 * 120.00211 * 245.00182 * 11 2 1 13 13 N 1.34775 * 119.99989 * 64.99301 * 11 2 1 14 14 C 1.46505 * 120.00015 * 180.02562 * 13 11 2 15 15 C 1.52997 * 109.47286 * 180.02562 * 14 13 11 16 16 H 1.08999 * 109.45295 * 294.95339 * 15 14 13 17 17 C 1.54865 * 109.45047 * 174.99979 * 15 14 13 18 18 C 1.47088 * 110.32275 * 168.69275 * 17 15 14 19 19 C 1.52573 * 114.32541 * 62.80560 * 18 17 15 20 20 C 1.50888 * 109.35717 * 274.98693 * 19 18 17 21 21 C 1.53950 * 110.09398 * 91.88723 * 20 19 18 22 22 N 1.44580 * 109.44798 * 54.87006 * 15 14 13 23 23 C 1.36939 * 118.64681 * 30.76514 * 22 15 14 24 24 H 1.08005 * 119.99654 * 56.45343 * 23 22 15 25 25 C 1.38813 * 120.00371 * 236.45733 * 23 22 15 26 26 N 1.31617 * 120.00072 * 167.95549 * 25 23 22 27 27 Si 1.86802 * 119.99662 * 347.95412 * 25 23 22 28 28 H 1.48492 * 109.47303 * 53.90701 * 27 25 23 29 29 H 1.48498 * 109.47206 * 173.91046 * 27 25 23 30 30 H 1.48507 * 109.46965 * 293.90722 * 27 25 23 31 31 H 1.09000 * 109.47071 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.47018 * 300.00037 * 1 2 3 33 33 H 1.08995 * 109.47041 * 60.00179 * 1 2 3 34 34 H 1.08002 * 120.81818 * 359.95028 * 6 5 4 35 35 H 1.08004 * 120.38794 * 180.02562 * 7 6 5 36 36 H 1.07995 * 119.55515 * 180.02562 * 8 7 6 37 37 H 1.07998 * 119.65947 * 179.97438 * 10 9 8 38 38 H 0.96991 * 120.00439 * 0.02562 * 13 11 2 39 39 H 1.09003 * 109.46800 * 300.00780 * 14 13 11 40 40 H 1.09001 * 109.46729 * 59.99969 * 14 13 11 41 41 H 1.09005 * 109.32618 * 288.95781 * 17 15 14 42 42 H 1.08997 * 109.32629 * 48.42882 * 17 15 14 43 43 H 1.08999 * 108.51249 * 184.05557 * 18 17 15 44 44 H 1.08998 * 108.51452 * 301.70924 * 18 17 15 45 45 H 1.08993 * 109.48779 * 34.94917 * 19 18 17 46 46 H 1.08992 * 109.49279 * 155.00023 * 19 18 17 47 47 H 1.09003 * 109.36499 * 212.07577 * 20 19 18 48 48 H 1.08992 * 109.36776 * 331.82357 * 20 19 18 49 49 H 1.08991 * 108.94870 * 80.12080 * 21 20 19 50 50 H 1.09004 * 108.94788 * 198.84027 * 21 20 19 51 51 H 0.97000 * 119.99499 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0117 0.0326 2.3281 6 6 1.5962 1.3604 2.3483 7 6 1.6188 2.0390 3.5559 8 6 2.0494 1.3799 4.6925 9 7 2.4366 0.1208 4.6390 10 6 2.4303 -0.5603 3.5101 11 6 2.0324 -0.7104 -1.2304 12 8 2.6530 -1.7467 -1.1214 13 7 1.7918 -0.1943 -2.4519 14 6 2.2797 -0.8852 -3.6482 15 6 1.8755 -0.0948 -4.8942 16 1 0.7894 -0.0924 -4.9861 17 6 2.4977 -0.7561 -6.1487 18 6 1.9123 -0.1845 -7.3710 19 6 2.1794 1.3060 -7.5582 20 6 1.1415 2.0988 -6.8025 21 6 1.6459 2.4122 -5.3822 22 7 2.3510 1.2655 -4.7767 23 6 3.5031 1.4998 -4.0746 24 1 4.4174 0.9973 -4.3540 25 6 3.4960 2.3831 -3.0037 26 7 4.5256 2.4335 -2.1854 27 14 2.0250 3.5001 -2.7242 28 1 0.7870 2.6823 -2.6631 29 1 2.1970 4.2343 -1.4450 30 1 1.9218 4.4717 -3.8426 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 -0.3633 0.5138 -0.8900 34 1 1.2646 1.8502 1.4446 35 1 1.3030 3.0704 3.6090 36 1 2.0688 1.9036 5.6368 37 1 2.7551 -1.5902 3.5055 38 1 1.2957 0.6346 -2.5392 39 1 3.3660 -0.9638 -3.6046 40 1 1.8447 -1.8836 -3.6938 41 1 3.5743 -0.5852 -6.1502 42 1 2.3054 -1.8287 -6.1240 43 1 2.3161 -0.7190 -8.2309 44 1 0.8338 -0.3398 -7.3436 45 1 3.1711 1.5485 -7.1765 46 1 2.1268 1.5547 -8.6180 47 1 0.9446 3.0320 -7.3303 48 1 0.2207 1.5192 -6.7374 49 1 2.3266 3.2622 -5.4279 50 1 0.7946 2.6743 -4.7540 51 1 4.5203 3.0505 -1.4369 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485481688.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:16 Heat of formation + Delta-G solvation = -16.651441 kcal Electronic energy + Delta-G solvation = -32421.432391 eV Core-core repulsion = 28321.863550 eV Total energy + Delta-G solvation = -4099.568841 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.76518 -39.43640 -38.50861 -37.55831 -34.63577 -33.47182 -32.60105 -32.19397 -31.63533 -31.32068 -29.98437 -27.39356 -25.83118 -24.76750 -23.81648 -23.50094 -22.88208 -21.95881 -20.21648 -19.66555 -19.43471 -18.37614 -17.44559 -16.72034 -16.41991 -15.97995 -15.74351 -15.53257 -15.29542 -15.06301 -14.46286 -14.37696 -14.29657 -13.99438 -13.80340 -13.49650 -13.42030 -13.11283 -12.92843 -12.87071 -12.46617 -12.33947 -12.25397 -12.14482 -11.86751 -11.71206 -11.58505 -11.36425 -11.08959 -10.99257 -10.66410 -10.39912 -10.30856 -10.17065 -10.03719 -9.82219 -9.77060 -9.62928 -9.61774 -9.22176 -8.62739 -8.40199 -8.28148 -6.65102 -6.09425 -3.83280 1.11117 1.23235 2.78229 3.01143 3.12977 3.17179 3.21808 3.78064 3.95205 4.25264 4.47802 4.61450 4.76686 4.79643 4.83176 4.93196 5.05242 5.08738 5.11799 5.18840 5.23665 5.33108 5.42585 5.47322 5.53771 5.68913 5.70394 5.72167 5.83078 5.93064 5.96253 6.03132 6.05080 6.13612 6.19836 6.29236 6.36105 6.38561 6.40748 6.46320 6.55897 6.62985 6.72379 6.77910 6.89922 6.99371 7.11785 7.24845 7.92969 7.99292 8.12681 8.45062 8.78179 8.88488 9.51992 9.99448 10.98264 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016599 B = 0.003394 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.486339 B = 8247.975899 C = 9063.510520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.064 3.936 3 H 0.096 0.904 4 O -0.273 6.273 5 C 0.092 3.908 6 C -0.170 4.170 7 C -0.129 4.129 8 C 0.049 3.951 9 N -0.448 5.448 10 C 0.073 3.927 11 C 0.524 3.476 12 O -0.533 6.533 13 N -0.687 5.687 14 C 0.136 3.864 15 C 0.177 3.823 16 H 0.045 0.955 17 C -0.134 4.134 18 C -0.102 4.102 19 C -0.108 4.108 20 C -0.132 4.132 21 C 0.125 3.875 22 N -0.601 5.601 23 C -0.277 4.277 24 H 0.073 0.927 25 C 0.054 3.946 26 N -0.889 5.889 27 Si 0.879 3.121 28 H -0.278 1.278 29 H -0.303 1.303 30 H -0.275 1.275 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.140 0.860 35 H 0.136 0.864 36 H 0.156 0.844 37 H 0.165 0.835 38 H 0.399 0.601 39 H 0.079 0.921 40 H 0.053 0.947 41 H 0.067 0.933 42 H 0.053 0.947 43 H 0.044 0.956 44 H 0.047 0.953 45 H 0.076 0.924 46 H 0.045 0.955 47 H 0.053 0.947 48 H 0.051 0.949 49 H 0.064 0.936 50 H 0.013 0.987 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.606 -0.646 1.745 10.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.003 3.997 3 H 0.114 0.886 4 O -0.184 6.184 5 C 0.043 3.957 6 C -0.196 4.196 7 C -0.149 4.149 8 C -0.108 4.108 9 N -0.157 5.157 10 C -0.086 4.086 11 C 0.308 3.692 12 O -0.409 6.409 13 N -0.338 5.338 14 C 0.012 3.988 15 C 0.070 3.930 16 H 0.063 0.937 17 C -0.175 4.175 18 C -0.140 4.140 19 C -0.146 4.146 20 C -0.171 4.171 21 C 0.001 3.999 22 N -0.325 5.325 23 C -0.407 4.407 24 H 0.090 0.910 25 C -0.149 4.149 26 N -0.528 5.528 27 Si 0.709 3.291 28 H -0.204 1.204 29 H -0.231 1.231 30 H -0.201 1.201 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.157 0.843 35 H 0.154 0.846 36 H 0.173 0.827 37 H 0.182 0.818 38 H 0.235 0.765 39 H 0.098 0.902 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.095 0.905 46 H 0.063 0.937 47 H 0.072 0.928 48 H 0.070 0.930 49 H 0.083 0.917 50 H 0.031 0.969 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.743 -1.912 2.673 10.282 hybrid contribution -1.268 2.170 -0.841 2.650 sum -11.011 0.259 1.832 11.165 Atomic orbital electron populations 1.22358 0.93134 1.04300 1.03656 1.22282 0.95219 0.97638 0.84521 0.88647 1.86233 1.79554 1.38846 1.13768 1.20283 0.96123 0.91334 0.87975 1.21833 1.03768 0.94063 0.99985 1.21986 0.99122 1.01072 0.92695 1.22605 0.98569 0.91024 0.98566 1.67712 1.12597 1.08540 1.26854 1.22204 1.00245 1.00942 0.85200 1.19517 0.80424 0.85424 0.83864 1.90679 1.40132 1.23775 1.86351 1.45543 1.56328 1.27197 1.04730 1.21434 1.01024 0.93138 0.83158 1.20604 0.95445 0.85438 0.91558 0.93705 1.21300 1.01893 0.98397 0.95899 1.20306 0.99997 0.96079 0.97612 1.20956 1.00963 0.94697 0.97967 1.21857 0.98300 0.99385 0.97600 1.21790 0.95322 0.91797 0.90994 1.43915 1.27714 1.00189 1.60694 1.18519 0.88079 1.27031 1.07049 0.90979 1.25752 0.95858 0.98776 0.94464 1.69834 1.31259 1.36869 1.14847 0.87216 0.83410 0.81803 0.76648 1.20433 1.23063 1.20149 0.90444 0.91052 0.90226 0.84254 0.84586 0.82665 0.81804 0.76483 0.90237 0.92882 0.91402 0.92883 0.93707 0.93443 0.90535 0.93672 0.92836 0.93015 0.91720 0.96901 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.31 9.10 37.16 0.34 -1.97 16 2 C 0.06 1.09 2.67 -27.88 -0.07 1.01 16 3 H 0.10 1.67 6.34 -51.93 -0.33 1.34 16 4 O -0.27 -4.87 9.38 -39.32 -0.37 -5.24 16 5 C 0.09 1.43 6.53 -39.07 -0.26 1.18 16 6 C -0.17 -2.37 8.21 -39.14 -0.32 -2.69 16 7 C -0.13 -1.52 10.11 -39.46 -0.40 -1.92 16 8 C 0.05 0.59 11.18 -17.54 -0.20 0.40 16 9 N -0.45 -6.39 10.36 -13.13 -0.14 -6.53 16 10 C 0.07 1.08 11.14 -17.37 -0.19 0.88 16 11 C 0.52 10.62 7.18 -10.99 -0.08 10.54 16 12 O -0.53 -12.53 16.51 -14.31 -0.24 -12.77 16 13 N -0.69 -13.25 4.42 -60.29 -0.27 -13.52 16 14 C 0.14 2.57 4.53 -4.04 -0.02 2.55 16 15 C 0.18 3.09 2.19 -67.97 -0.15 2.94 16 16 H 0.04 0.73 8.06 -51.93 -0.42 0.31 16 17 C -0.13 -2.09 5.06 -28.59 -0.14 -2.24 16 18 C -0.10 -1.43 5.16 -29.79 -0.15 -1.59 16 19 C -0.11 -1.61 5.51 -28.01 -0.15 -1.76 16 20 C -0.13 -2.01 5.71 -27.30 -0.16 -2.16 16 21 C 0.13 2.34 4.06 -2.94 -0.01 2.33 16 22 N -0.60 -12.01 1.32 -164.46 -0.22 -12.22 16 23 C -0.28 -6.72 7.27 -15.06 -0.11 -6.83 16 24 H 0.07 2.01 8.05 -52.48 -0.42 1.59 16 25 C 0.05 1.37 5.07 -17.43 -0.09 1.28 16 26 N -0.89 -24.74 13.97 55.49 0.78 -23.97 16 27 Si 0.88 19.33 23.22 -169.99 -3.95 15.39 16 28 H -0.28 -5.57 6.19 56.52 0.35 -5.22 16 29 H -0.30 -6.87 7.11 56.52 0.40 -6.46 16 30 H -0.28 -6.03 6.43 56.52 0.36 -5.67 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 0.81 6.83 -51.92 -0.35 0.45 16 33 H 0.08 0.96 7.92 -51.93 -0.41 0.55 16 34 H 0.14 1.84 5.67 -52.49 -0.30 1.54 16 35 H 0.14 1.21 8.06 -52.48 -0.42 0.78 16 36 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.16 2.17 8.06 -52.49 -0.42 1.75 16 38 H 0.40 7.59 5.63 -40.82 -0.23 7.36 16 39 H 0.08 1.75 7.48 -51.93 -0.39 1.36 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.05 0.74 8.11 -51.93 -0.42 0.31 16 43 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.05 0.62 7.35 -51.93 -0.38 0.24 16 45 H 0.08 1.34 7.48 -51.93 -0.39 0.95 16 46 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 48 H 0.05 0.73 7.31 -51.93 -0.38 0.35 16 49 H 0.06 1.33 6.45 -51.93 -0.34 0.99 16 50 H 0.01 0.25 5.88 -51.93 -0.31 -0.06 16 51 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 389.46 15.07 5.87 5.87 Total: -1.00 -29.63 389.46 -8.79 -38.42 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: -8.09 Total: 12.62 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -2.17 Total: 1.94 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: 0.16 Total: -56.24 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.60 Total: -18.00 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -3.95 Total: 15.39 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.63 -8.79 -38.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485481688.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.768 kcal (2) G-P(sol) polarization free energy of solvation -29.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds