Wall clock time and date at job start Wed Apr 1 2020 05:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46894 * 2 1 4 4 O 1.42902 * 109.46935 * 119.99613 * 2 1 3 5 5 C 1.35911 * 117.00311 * 280.10720 * 4 2 1 6 6 C 1.39142 * 120.46987 * 358.56468 * 5 4 2 7 7 C 1.38537 * 118.37224 * 179.97438 * 6 5 4 8 8 C 1.38260 * 119.22284 * 359.97438 * 7 6 5 9 9 N 1.31841 * 120.88509 * 0.02562 * 8 7 6 10 10 C 1.31846 * 121.78181 * 359.97438 * 9 8 7 11 11 C 1.50693 * 109.47169 * 239.99877 * 2 1 3 12 12 O 1.21285 * 120.00211 * 245.00182 * 11 2 1 13 13 N 1.34775 * 119.99989 * 64.99301 * 11 2 1 14 14 C 1.46505 * 120.00015 * 180.02562 * 13 11 2 15 15 C 1.52997 * 109.47286 * 180.02562 * 14 13 11 16 16 H 1.08999 * 109.45295 * 294.95339 * 15 14 13 17 17 C 1.54865 * 109.45047 * 174.99979 * 15 14 13 18 18 C 1.47088 * 110.32275 * 168.69275 * 17 15 14 19 19 C 1.52573 * 114.32541 * 62.80560 * 18 17 15 20 20 C 1.50888 * 109.35717 * 274.98693 * 19 18 17 21 21 C 1.53950 * 110.09398 * 91.88723 * 20 19 18 22 22 N 1.44580 * 109.44798 * 54.87006 * 15 14 13 23 23 C 1.36939 * 118.64681 * 30.76514 * 22 15 14 24 24 H 1.08005 * 119.99654 * 56.45343 * 23 22 15 25 25 C 1.38813 * 120.00371 * 236.45733 * 23 22 15 26 26 N 1.31617 * 120.00072 * 167.95549 * 25 23 22 27 27 Si 1.86802 * 119.99662 * 347.95412 * 25 23 22 28 28 H 1.48492 * 109.47303 * 53.90701 * 27 25 23 29 29 H 1.48498 * 109.47206 * 173.91046 * 27 25 23 30 30 H 1.48507 * 109.46965 * 293.90722 * 27 25 23 31 31 H 1.09000 * 109.47071 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.47018 * 300.00037 * 1 2 3 33 33 H 1.08995 * 109.47041 * 60.00179 * 1 2 3 34 34 H 1.08002 * 120.81818 * 359.95028 * 6 5 4 35 35 H 1.08004 * 120.38794 * 180.02562 * 7 6 5 36 36 H 1.07995 * 119.55515 * 180.02562 * 8 7 6 37 37 H 1.07998 * 119.65947 * 179.97438 * 10 9 8 38 38 H 0.96991 * 120.00439 * 0.02562 * 13 11 2 39 39 H 1.09003 * 109.46800 * 300.00780 * 14 13 11 40 40 H 1.09001 * 109.46729 * 59.99969 * 14 13 11 41 41 H 1.09005 * 109.32618 * 288.95781 * 17 15 14 42 42 H 1.08997 * 109.32629 * 48.42882 * 17 15 14 43 43 H 1.08999 * 108.51249 * 184.05557 * 18 17 15 44 44 H 1.08998 * 108.51452 * 301.70924 * 18 17 15 45 45 H 1.08993 * 109.48779 * 34.94917 * 19 18 17 46 46 H 1.08992 * 109.49279 * 155.00023 * 19 18 17 47 47 H 1.09003 * 109.36499 * 212.07577 * 20 19 18 48 48 H 1.08992 * 109.36776 * 331.82357 * 20 19 18 49 49 H 1.08991 * 108.94870 * 80.12080 * 21 20 19 50 50 H 1.09004 * 108.94788 * 198.84027 * 21 20 19 51 51 H 0.97000 * 119.99499 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0117 0.0326 2.3281 6 6 1.5962 1.3604 2.3483 7 6 1.6188 2.0390 3.5559 8 6 2.0494 1.3799 4.6925 9 7 2.4366 0.1208 4.6390 10 6 2.4303 -0.5603 3.5101 11 6 2.0324 -0.7104 -1.2304 12 8 2.6530 -1.7467 -1.1214 13 7 1.7918 -0.1943 -2.4519 14 6 2.2797 -0.8852 -3.6482 15 6 1.8755 -0.0948 -4.8942 16 1 0.7894 -0.0924 -4.9861 17 6 2.4977 -0.7561 -6.1487 18 6 1.9123 -0.1845 -7.3710 19 6 2.1794 1.3060 -7.5582 20 6 1.1415 2.0988 -6.8025 21 6 1.6459 2.4122 -5.3822 22 7 2.3510 1.2655 -4.7767 23 6 3.5031 1.4998 -4.0746 24 1 4.4174 0.9973 -4.3540 25 6 3.4960 2.3831 -3.0037 26 7 4.5256 2.4335 -2.1854 27 14 2.0250 3.5001 -2.7242 28 1 0.7870 2.6823 -2.6631 29 1 2.1970 4.2343 -1.4450 30 1 1.9218 4.4717 -3.8426 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 -0.3633 0.5138 -0.8900 34 1 1.2646 1.8502 1.4446 35 1 1.3030 3.0704 3.6090 36 1 2.0688 1.9036 5.6368 37 1 2.7551 -1.5902 3.5055 38 1 1.2957 0.6346 -2.5392 39 1 3.3660 -0.9638 -3.6046 40 1 1.8447 -1.8836 -3.6938 41 1 3.5743 -0.5852 -6.1502 42 1 2.3054 -1.8287 -6.1240 43 1 2.3161 -0.7190 -8.2309 44 1 0.8338 -0.3398 -7.3436 45 1 3.1711 1.5485 -7.1765 46 1 2.1268 1.5547 -8.6180 47 1 0.9446 3.0320 -7.3303 48 1 0.2207 1.5192 -6.7374 49 1 2.3266 3.2622 -5.4279 50 1 0.7946 2.6743 -4.7540 51 1 4.5203 3.0505 -1.4369 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485481688.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:15 Heat of formation + Delta-G solvation = -34.814380 kcal Electronic energy + Delta-G solvation = -32422.219995 eV Core-core repulsion = 28321.863550 eV Total energy + Delta-G solvation = -4100.356445 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.94946 -40.86070 -39.86649 -38.91388 -36.13786 -35.13484 -33.91502 -33.31941 -33.24749 -32.70010 -31.07064 -28.91313 -27.31511 -25.96979 -25.28496 -24.76652 -24.11501 -23.26512 -21.71313 -21.01059 -20.94831 -19.55963 -18.89156 -18.08046 -17.77089 -17.36126 -17.20227 -16.95647 -16.73801 -16.51580 -15.83927 -15.78614 -15.40729 -15.37577 -14.99594 -14.84061 -14.70302 -14.61785 -14.38549 -14.04696 -13.90488 -13.67159 -13.46686 -13.40333 -13.20796 -13.18243 -12.85665 -12.71294 -12.64465 -12.33444 -12.23969 -11.96846 -11.86158 -11.41267 -11.30030 -11.26975 -11.05495 -10.87064 -10.73303 -10.64661 -10.58319 -9.92741 -9.50889 -8.41435 -8.01175 -5.81177 0.08646 0.17566 1.25183 1.34761 1.44557 1.46799 1.62397 2.38493 2.56326 2.74709 3.16371 3.28067 3.40776 3.53230 3.61995 3.68954 3.75042 3.86335 3.95659 4.05127 4.08511 4.20351 4.24751 4.32997 4.36920 4.48818 4.50092 4.52856 4.56106 4.71250 4.78200 4.85617 4.92183 4.93628 4.99495 5.03507 5.04794 5.12916 5.15183 5.21674 5.37975 5.38848 5.43149 5.51078 5.56566 5.59093 5.72375 6.02862 6.07313 6.38733 6.55612 6.89884 7.15307 7.20975 7.66290 8.12340 9.04198 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016599 B = 0.003394 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.486339 B = 8247.975899 C = 9063.510520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.067 3.933 3 H 0.089 0.911 4 O -0.299 6.299 5 C 0.066 3.934 6 C -0.177 4.177 7 C -0.121 4.121 8 C 0.052 3.948 9 N -0.465 5.465 10 C 0.058 3.942 11 C 0.515 3.485 12 O -0.576 6.576 13 N -0.681 5.681 14 C 0.138 3.862 15 C 0.177 3.823 16 H 0.077 0.923 17 C -0.128 4.128 18 C -0.102 4.102 19 C -0.108 4.108 20 C -0.125 4.125 21 C 0.120 3.880 22 N -0.605 5.605 23 C -0.255 4.255 24 H 0.016 0.984 25 C 0.006 3.994 26 N -0.945 5.945 27 Si 0.931 3.069 28 H -0.239 1.239 29 H -0.311 1.311 30 H -0.270 1.270 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.146 0.854 35 H 0.173 0.827 36 H 0.192 0.808 37 H 0.165 0.835 38 H 0.403 0.597 39 H 0.033 0.967 40 H 0.073 0.927 41 H 0.032 0.968 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.071 0.929 45 H 0.038 0.962 46 H 0.068 0.932 47 H 0.072 0.928 48 H 0.075 0.925 49 H 0.039 0.961 50 H 0.024 0.976 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.766 0.724 1.148 14.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.007 3.993 3 H 0.107 0.893 4 O -0.211 6.211 5 C 0.018 3.982 6 C -0.203 4.203 7 C -0.141 4.141 8 C -0.105 4.105 9 N -0.174 5.174 10 C -0.099 4.099 11 C 0.300 3.700 12 O -0.456 6.456 13 N -0.331 5.331 14 C 0.013 3.987 15 C 0.071 3.929 16 H 0.095 0.905 17 C -0.168 4.168 18 C -0.139 4.139 19 C -0.145 4.145 20 C -0.163 4.163 21 C -0.003 4.003 22 N -0.330 5.330 23 C -0.385 4.385 24 H 0.034 0.966 25 C -0.192 4.192 26 N -0.587 5.587 27 Si 0.758 3.242 28 H -0.163 1.163 29 H -0.239 1.239 30 H -0.195 1.195 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.164 0.836 35 H 0.190 0.810 36 H 0.209 0.791 37 H 0.182 0.818 38 H 0.239 0.761 39 H 0.051 0.949 40 H 0.092 0.908 41 H 0.051 0.949 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.089 0.911 45 H 0.057 0.943 46 H 0.087 0.913 47 H 0.091 0.909 48 H 0.093 0.907 49 H 0.057 0.943 50 H 0.041 0.959 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.948 -0.552 2.028 14.106 hybrid contribution 0.166 1.734 -0.671 1.867 sum -13.782 1.182 1.357 13.899 Atomic orbital electron populations 1.22350 0.89644 1.05097 1.05387 1.22264 0.97752 0.96208 0.83067 0.89335 1.86178 1.80565 1.39865 1.14520 1.20462 0.97992 0.92395 0.87352 1.22056 1.03588 0.93422 1.01268 1.22396 0.97678 1.02479 0.91506 1.23287 0.96670 0.90282 1.00237 1.67764 1.13361 1.09825 1.26478 1.22294 1.00801 1.01408 0.85441 1.20221 0.79617 0.85072 0.85080 1.90644 1.42054 1.25864 1.87077 1.45549 1.55803 1.27054 1.04734 1.21436 0.98378 0.94764 0.84081 1.20776 0.97072 0.83745 0.91351 0.90511 1.21240 0.99723 0.99798 0.96064 1.20292 1.01304 0.95399 0.96898 1.20944 0.98885 0.95496 0.99214 1.21806 0.98818 1.00802 0.94895 1.21826 0.94702 0.90173 0.93639 1.43922 1.26434 1.01776 1.60828 1.18107 0.87908 1.25557 1.06932 0.96645 1.26338 0.98578 1.00273 0.93994 1.70021 1.34241 1.38362 1.16037 0.86299 0.81526 0.80219 0.76108 1.16349 1.23920 1.19545 0.90160 0.88973 0.88686 0.83636 0.80985 0.79112 0.81757 0.76081 0.94861 0.90845 0.94876 0.90762 0.92170 0.91060 0.94343 0.91339 0.90894 0.90676 0.94263 0.95858 0.93266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.06 9.10 71.98 0.66 -3.40 16 2 C 0.07 2.30 2.67 29.85 0.08 2.38 16 3 H 0.09 3.12 6.34 -2.39 -0.02 3.11 16 4 O -0.30 -11.03 9.38 -73.56 -0.69 -11.72 16 5 C 0.07 2.08 6.53 22.60 0.15 2.23 16 6 C -0.18 -4.70 8.21 22.56 0.19 -4.51 16 7 C -0.12 -2.52 10.11 22.35 0.23 -2.30 16 8 C 0.05 1.13 11.18 84.70 0.95 2.08 16 9 N -0.46 -12.88 10.36 -195.44 -2.02 -14.91 16 10 C 0.06 1.75 11.14 84.80 0.94 2.69 16 11 C 0.52 21.45 7.18 87.65 0.63 22.08 16 12 O -0.58 -28.54 16.51 15.94 0.26 -28.28 16 13 N -0.68 -26.36 4.42 -463.06 -2.05 -28.41 16 14 C 0.14 5.27 4.53 86.38 0.39 5.66 16 15 C 0.18 5.95 2.19 45.99 0.10 6.05 16 16 H 0.08 2.18 8.06 -2.39 -0.02 2.16 16 17 C -0.13 -3.85 5.06 29.39 0.15 -3.70 16 18 C -0.10 -2.52 5.16 28.61 0.15 -2.37 16 19 C -0.11 -2.93 5.51 29.77 0.16 -2.77 16 20 C -0.12 -3.29 5.71 30.23 0.17 -3.11 16 21 C 0.12 4.22 4.06 86.49 0.35 4.57 16 22 N -0.60 -23.96 1.32 -674.24 -0.89 -24.85 16 23 C -0.25 -12.94 7.27 84.03 0.61 -12.33 16 24 H 0.02 0.97 8.05 -2.91 -0.02 0.95 16 25 C 0.01 0.32 5.07 84.86 0.43 0.75 16 26 N -0.94 -55.54 13.97 21.65 0.30 -55.23 16 27 Si 0.93 39.22 23.22 68.60 1.59 40.82 16 28 H -0.24 -8.48 6.19 99.48 0.62 -7.86 16 29 H -0.31 -13.51 7.11 99.48 0.71 -12.80 16 30 H -0.27 -11.10 6.43 99.48 0.64 -10.46 16 31 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.09 1.85 6.83 -2.38 -0.02 1.83 16 33 H 0.09 1.99 7.92 -2.39 -0.02 1.97 16 34 H 0.15 3.61 5.67 -2.91 -0.02 3.59 16 35 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 36 H 0.19 2.64 8.06 -2.91 -0.02 2.61 16 37 H 0.17 4.65 8.06 -2.91 -0.02 4.62 16 38 H 0.40 14.73 5.63 -92.71 -0.52 14.21 16 39 H 0.03 1.57 7.48 -2.39 -0.02 1.56 16 40 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 42 H 0.07 1.92 8.11 -2.39 -0.02 1.90 16 43 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.07 1.49 7.35 -2.39 -0.02 1.48 16 45 H 0.04 1.34 7.48 -2.39 -0.02 1.32 16 46 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.07 1.69 7.31 -2.39 -0.02 1.67 16 49 H 0.04 1.57 6.45 -2.39 -0.02 1.55 16 50 H 0.02 0.79 5.88 -2.38 -0.01 0.78 16 51 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -71.29 389.46 3.09 -68.20 By element: Atomic # 1 Polarization: 40.13 SS G_CDS: 0.25 Total: 40.39 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: 6.33 Total: 14.00 kcal Atomic # 7 Polarization: -118.74 SS G_CDS: -4.66 Total: -123.40 kcal Atomic # 8 Polarization: -39.57 SS G_CDS: -0.43 Total: -40.00 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 1.59 Total: 40.82 kcal Total: -71.29 3.09 -68.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485481688.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.385 kcal (2) G-P(sol) polarization free energy of solvation -71.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds