Wall clock time and date at job start Wed Apr 1 2020 05:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46598 * 2 1 4 4 O 1.42894 * 109.47146 * 240.00082 * 2 1 3 5 5 C 1.35916 * 117.00330 * 84.14499 * 4 2 1 6 6 C 1.39139 * 120.46882 * 354.39975 * 5 4 2 7 7 C 1.38543 * 118.37105 * 179.71222 * 6 5 4 8 8 C 1.38258 * 119.21831 * 0.57351 * 7 6 5 9 9 N 1.31851 * 120.88929 * 359.68427 * 8 7 6 10 10 C 1.31842 * 121.77637 * 0.02562 * 9 8 7 11 11 C 1.50696 * 109.47082 * 119.99837 * 2 1 3 12 12 O 1.21283 * 119.99832 * 115.00173 * 11 2 1 13 13 N 1.34780 * 120.00153 * 295.00131 * 11 2 1 14 14 C 1.46501 * 119.99899 * 180.02562 * 13 11 2 15 15 C 1.53005 * 109.46835 * 180.02562 * 14 13 11 16 16 H 1.08998 * 109.42736 * 64.93258 * 15 14 13 17 17 C 1.55417 * 109.70707 * 185.08200 * 15 14 13 18 18 C 1.47090 * 110.34585 * 191.29308 * 17 15 14 19 19 C 1.52564 * 114.33156 * 297.12367 * 18 17 15 20 20 C 1.50881 * 109.35451 * 85.01478 * 19 18 17 21 21 C 1.53946 * 110.09740 * 268.11870 * 20 19 18 22 22 N 1.44575 * 109.44928 * 304.99751 * 15 14 13 23 23 C 1.36939 * 118.64565 * 329.24249 * 22 15 14 24 24 H 1.08008 * 119.99691 * 329.32428 * 23 22 15 25 25 C 1.38806 * 120.00208 * 149.32131 * 23 22 15 26 26 N 1.31613 * 120.00499 * 341.96633 * 25 23 22 27 27 Si 1.86805 * 119.99905 * 161.96149 * 25 23 22 28 28 H 1.48499 * 109.47287 * 265.02071 * 27 25 23 29 29 H 1.48497 * 109.47067 * 145.02327 * 27 25 23 30 30 H 1.48504 * 109.46897 * 25.02489 * 27 25 23 31 31 H 1.09002 * 109.46598 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46763 * 300.00025 * 1 2 3 33 33 H 1.09002 * 109.47056 * 60.00371 * 1 2 3 34 34 H 1.08000 * 120.81567 * 359.97438 * 6 5 4 35 35 H 1.07993 * 120.39096 * 180.30255 * 7 6 5 36 36 H 1.08002 * 119.55348 * 179.70579 * 8 7 6 37 37 H 1.08004 * 119.65248 * 179.97438 * 10 9 8 38 38 H 0.96996 * 119.99733 * 0.02562 * 13 11 2 39 39 H 1.08995 * 109.47174 * 59.99799 * 14 13 11 40 40 H 1.09003 * 109.47184 * 299.99613 * 14 13 11 41 41 H 1.08997 * 109.37488 * 70.98605 * 17 15 14 42 42 H 1.09001 * 109.11450 * 311.43755 * 17 15 14 43 43 H 1.08997 * 108.51411 * 175.86254 * 18 17 15 44 44 H 1.08999 * 108.38815 * 58.28788 * 18 17 15 45 45 H 1.09000 * 109.48486 * 325.05263 * 19 18 17 46 46 H 1.08994 * 109.49479 * 204.98309 * 19 18 17 47 47 H 1.09005 * 109.36384 * 147.92539 * 20 19 18 48 48 H 1.09002 * 109.26301 * 28.24719 * 20 19 18 49 49 H 1.09001 * 108.94574 * 279.88139 * 21 20 19 50 50 H 1.08994 * 108.95021 * 161.24983 * 21 20 19 51 51 H 0.97002 * 120.00544 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.0956 0.0582 -2.3086 6 6 1.6256 1.3673 -2.3462 7 6 1.7439 2.0754 -3.5311 8 6 2.3095 1.4593 -4.6320 9 7 2.7403 0.2150 -4.5644 10 6 2.6514 -0.4911 -3.4545 11 6 2.0324 -0.7104 1.2304 12 8 2.6531 -1.7466 1.1215 13 7 1.7919 -0.1941 2.4520 14 6 2.2808 -0.8844 3.6482 15 6 1.8753 -0.0946 4.8943 16 1 0.7891 -0.0924 4.9846 17 6 2.4994 -0.7513 6.1571 18 6 1.9105 -0.1767 7.3763 19 6 2.1743 1.3148 7.5592 20 6 1.1364 2.1030 6.7990 21 6 1.6430 2.4127 5.3786 22 7 2.3515 1.2655 4.7782 23 6 3.5046 1.4998 4.0776 24 1 4.2816 0.7501 4.0502 25 6 3.6747 2.7007 3.4027 26 7 2.6320 3.4562 3.1304 27 14 5.3839 3.2448 2.8809 28 1 5.9510 4.1513 3.9114 29 1 5.3005 3.9616 1.5830 30 1 6.2589 2.0540 2.7334 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.1833 1.8216 -1.4719 35 1 1.3943 3.0952 -3.5953 36 1 2.3999 2.0048 -5.5597 37 1 3.0149 -1.5080 -3.4377 38 1 1.2952 0.6345 2.5391 39 1 3.3671 -0.9622 3.6043 40 1 1.8465 -1.8832 3.6943 41 1 3.5756 -0.5784 6.1601 42 1 2.3064 -1.8239 6.1340 43 1 2.3134 -0.7078 8.2387 44 1 0.8327 -0.3363 7.3458 45 1 3.1664 1.5579 7.1787 46 1 2.1188 1.5668 8.6181 47 1 0.9367 3.0376 7.3234 48 1 0.2173 1.5204 6.7360 49 1 2.3220 3.2642 5.4229 50 1 0.7926 2.6727 4.7484 51 1 2.7510 4.2956 2.6591 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485481694.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:28 Heat of formation + Delta-G solvation = -20.946943 kcal Electronic energy + Delta-G solvation = -32063.822536 eV Core-core repulsion = 27964.067428 eV Total energy + Delta-G solvation = -4099.755108 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.77087 -39.41943 -38.36662 -37.53830 -34.54807 -33.54597 -32.55654 -32.19430 -31.37940 -30.78946 -29.96963 -27.12544 -25.78583 -24.66860 -23.72951 -23.54753 -22.91775 -21.83885 -20.08138 -19.51980 -19.26704 -18.37312 -17.48042 -16.73853 -16.30569 -15.83970 -15.75207 -15.48237 -15.11680 -14.76040 -14.42527 -14.34441 -14.16267 -13.82986 -13.65302 -13.52462 -13.41126 -13.10735 -12.88912 -12.78970 -12.27151 -12.19325 -12.14048 -12.01206 -11.61030 -11.48959 -11.34955 -11.20613 -11.05721 -10.91330 -10.67130 -10.27879 -10.11605 -10.05555 -9.84461 -9.78808 -9.66325 -9.64252 -9.61925 -9.25320 -8.53105 -8.42526 -8.29820 -6.77678 -5.94070 -3.39664 1.09426 1.21135 2.78860 3.08951 3.28546 3.37108 3.40998 3.76601 3.95356 4.39025 4.46280 4.61220 4.78575 4.85191 4.96596 5.06302 5.11498 5.12666 5.21833 5.25705 5.37167 5.42341 5.53327 5.58038 5.59660 5.69812 5.82159 5.93302 5.96972 6.00549 6.03391 6.05780 6.07119 6.23632 6.31578 6.36976 6.49041 6.54668 6.58940 6.62230 6.69371 6.76585 6.92128 7.03023 7.11906 7.23693 7.27956 7.51097 7.73839 7.91095 8.17631 8.33500 8.77955 9.09639 9.73933 10.20787 11.11868 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013144 B = 0.003331 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.697908 B = 8404.149802 C = 9398.472744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.065 3.935 3 H 0.102 0.898 4 O -0.278 6.278 5 C 0.089 3.911 6 C -0.168 4.168 7 C -0.129 4.129 8 C 0.049 3.951 9 N -0.449 5.449 10 C 0.072 3.928 11 C 0.518 3.482 12 O -0.542 6.542 13 N -0.682 5.682 14 C 0.132 3.868 15 C 0.173 3.827 16 H 0.045 0.955 17 C -0.136 4.136 18 C -0.101 4.101 19 C -0.107 4.107 20 C -0.142 4.142 21 C 0.180 3.820 22 N -0.583 5.583 23 C -0.251 4.251 24 H 0.062 0.938 25 C 0.016 3.984 26 N -0.900 5.900 27 Si 0.887 3.113 28 H -0.288 1.288 29 H -0.292 1.292 30 H -0.279 1.279 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.144 0.856 35 H 0.137 0.863 36 H 0.156 0.844 37 H 0.164 0.836 38 H 0.413 0.587 39 H 0.069 0.931 40 H 0.052 0.948 41 H 0.063 0.937 42 H 0.048 0.952 43 H 0.041 0.959 44 H 0.046 0.954 45 H 0.074 0.926 46 H 0.040 0.960 47 H 0.049 0.951 48 H 0.044 0.956 49 H 0.066 0.934 50 H 0.025 0.975 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.103 -2.253 -3.552 8.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.005 3.995 3 H 0.120 0.880 4 O -0.189 6.189 5 C 0.040 3.960 6 C -0.194 4.194 7 C -0.149 4.149 8 C -0.108 4.108 9 N -0.158 5.158 10 C -0.087 4.087 11 C 0.301 3.699 12 O -0.420 6.420 13 N -0.333 5.333 14 C 0.007 3.993 15 C 0.064 3.936 16 H 0.063 0.937 17 C -0.177 4.177 18 C -0.138 4.138 19 C -0.144 4.144 20 C -0.181 4.181 21 C 0.056 3.944 22 N -0.305 5.305 23 C -0.381 4.381 24 H 0.080 0.920 25 C -0.183 4.183 26 N -0.543 5.543 27 Si 0.717 3.283 28 H -0.215 1.215 29 H -0.219 1.219 30 H -0.204 1.204 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.088 0.912 34 H 0.162 0.838 35 H 0.155 0.845 36 H 0.173 0.827 37 H 0.181 0.819 38 H 0.249 0.751 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.060 0.940 44 H 0.065 0.935 45 H 0.092 0.908 46 H 0.058 0.942 47 H 0.068 0.932 48 H 0.063 0.937 49 H 0.085 0.915 50 H 0.043 0.957 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.286 -3.412 -4.384 8.389 hybrid contribution 0.318 1.652 0.693 1.819 sum -5.968 -1.760 -3.691 7.235 Atomic orbital electron populations 1.22304 0.92855 1.03984 1.03830 1.22302 0.95549 0.97659 0.84011 0.88037 1.86218 1.80488 1.36944 1.15209 1.20285 0.95981 0.91317 0.88371 1.21897 1.03141 0.94183 1.00228 1.22006 0.98905 1.00991 0.92999 1.22621 0.97907 0.91466 0.98788 1.67715 1.14853 1.07590 1.25684 1.22211 0.99327 1.00959 0.86225 1.19699 0.80585 0.85420 0.84169 1.90680 1.40826 1.23894 1.86568 1.45519 1.56004 1.27539 1.04227 1.21488 1.00108 0.93650 0.84010 1.20635 0.95771 0.86165 0.90996 0.93701 1.21452 1.01573 0.98162 0.96486 1.20282 0.99931 0.96272 0.97350 1.20947 1.01192 0.94552 0.97757 1.22049 0.97853 0.98848 0.99355 1.20952 0.95822 0.89867 0.87790 1.43716 1.27263 0.99916 1.59574 1.19021 0.93328 1.01909 1.23852 0.92016 1.24923 0.96461 0.99391 0.97550 1.70026 1.27436 1.14018 1.42855 0.86515 0.85371 0.78765 0.77679 1.21455 1.21901 1.20369 0.90879 0.89794 0.91195 0.83795 0.84512 0.82701 0.81912 0.75077 0.91222 0.93019 0.91777 0.93285 0.94028 0.93519 0.90774 0.94156 0.93221 0.93699 0.91539 0.95666 0.93740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 9.12 37.16 0.34 -1.78 16 2 C 0.06 1.02 2.64 -27.88 -0.07 0.95 16 3 H 0.10 1.61 6.41 -51.93 -0.33 1.28 16 4 O -0.28 -4.64 9.35 -39.34 -0.37 -5.01 16 5 C 0.09 1.32 6.61 -39.08 -0.26 1.06 16 6 C -0.17 -2.19 8.30 -39.13 -0.32 -2.51 16 7 C -0.13 -1.45 10.11 -39.46 -0.40 -1.85 16 8 C 0.05 0.57 11.18 -17.54 -0.20 0.37 16 9 N -0.45 -6.24 10.36 -13.12 -0.14 -6.38 16 10 C 0.07 1.02 11.14 -17.38 -0.19 0.83 16 11 C 0.52 9.81 7.18 -10.99 -0.08 9.73 16 12 O -0.54 -12.10 16.51 -14.31 -0.24 -12.33 16 13 N -0.68 -12.45 4.68 -60.29 -0.28 -12.73 16 14 C 0.13 2.40 4.55 -4.04 -0.02 2.38 16 15 C 0.17 3.04 2.21 -67.67 -0.15 2.89 16 16 H 0.04 0.77 8.07 -51.93 -0.42 0.35 16 17 C -0.14 -2.16 5.09 -28.28 -0.14 -2.31 16 18 C -0.10 -1.49 5.16 -29.79 -0.15 -1.65 16 19 C -0.11 -1.71 5.51 -28.02 -0.15 -1.86 16 20 C -0.14 -2.36 5.71 -27.30 -0.16 -2.51 16 21 C 0.18 3.65 4.69 -2.95 -0.01 3.64 16 22 N -0.58 -11.86 1.75 -164.12 -0.29 -12.15 16 23 C -0.25 -5.87 7.51 -15.06 -0.11 -5.99 16 24 H 0.06 1.54 6.87 -52.48 -0.36 1.18 16 25 C 0.02 0.39 4.78 -17.44 -0.08 0.31 16 26 N -0.90 -22.19 11.46 55.49 0.64 -21.56 16 27 Si 0.89 20.57 29.59 -169.99 -5.03 15.54 16 28 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 29 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 30 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.08 0.96 7.92 -51.93 -0.41 0.55 16 33 H 0.07 0.75 6.83 -51.93 -0.35 0.40 16 34 H 0.14 1.73 5.55 -52.49 -0.29 1.44 16 35 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.16 1.33 8.06 -52.49 -0.42 0.90 16 37 H 0.16 2.09 8.06 -52.48 -0.42 1.67 16 38 H 0.41 7.62 7.86 -40.82 -0.32 7.30 16 39 H 0.07 1.43 6.89 -51.93 -0.36 1.08 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.05 0.70 8.11 -51.93 -0.42 0.28 16 43 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.05 0.66 7.35 -51.93 -0.38 0.28 16 45 H 0.07 1.38 7.48 -51.93 -0.39 0.99 16 46 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.04 0.71 7.31 -51.93 -0.38 0.33 16 49 H 0.07 1.54 6.70 -51.93 -0.35 1.20 16 50 H 0.03 0.55 8.01 -51.93 -0.42 0.13 16 51 H 0.25 6.25 8.31 -40.82 -0.34 5.91 16 LS Contribution 399.21 15.07 6.02 6.02 Total: -1.00 -27.79 399.21 -9.98 -37.77 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -8.12 Total: 9.14 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -2.17 Total: 1.70 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: -0.07 Total: -52.82 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.60 Total: -17.34 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.54 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -27.79 -9.98 -37.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485481694.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.820 kcal (2) G-P(sol) polarization free energy of solvation -27.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds