Wall clock time and date at job start Wed Apr 1 2020 05:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46598 * 2 1 4 4 O 1.42894 * 109.47146 * 240.00082 * 2 1 3 5 5 C 1.35916 * 117.00330 * 84.14499 * 4 2 1 6 6 C 1.39139 * 120.46882 * 354.39975 * 5 4 2 7 7 C 1.38543 * 118.37105 * 179.71222 * 6 5 4 8 8 C 1.38258 * 119.21831 * 0.57351 * 7 6 5 9 9 N 1.31851 * 120.88929 * 359.68427 * 8 7 6 10 10 C 1.31842 * 121.77637 * 0.02562 * 9 8 7 11 11 C 1.50696 * 109.47082 * 119.99837 * 2 1 3 12 12 O 1.21283 * 119.99832 * 115.00173 * 11 2 1 13 13 N 1.34780 * 120.00153 * 295.00131 * 11 2 1 14 14 C 1.46501 * 119.99899 * 180.02562 * 13 11 2 15 15 C 1.53005 * 109.46835 * 180.02562 * 14 13 11 16 16 H 1.08998 * 109.42736 * 64.93258 * 15 14 13 17 17 C 1.55417 * 109.70707 * 185.08200 * 15 14 13 18 18 C 1.47090 * 110.34585 * 191.29308 * 17 15 14 19 19 C 1.52564 * 114.33156 * 297.12367 * 18 17 15 20 20 C 1.50881 * 109.35451 * 85.01478 * 19 18 17 21 21 C 1.53946 * 110.09740 * 268.11870 * 20 19 18 22 22 N 1.44575 * 109.44928 * 304.99751 * 15 14 13 23 23 C 1.36939 * 118.64565 * 329.24249 * 22 15 14 24 24 H 1.08008 * 119.99691 * 329.32428 * 23 22 15 25 25 C 1.38806 * 120.00208 * 149.32131 * 23 22 15 26 26 N 1.31613 * 120.00499 * 341.96633 * 25 23 22 27 27 Si 1.86805 * 119.99905 * 161.96149 * 25 23 22 28 28 H 1.48499 * 109.47287 * 265.02071 * 27 25 23 29 29 H 1.48497 * 109.47067 * 145.02327 * 27 25 23 30 30 H 1.48504 * 109.46897 * 25.02489 * 27 25 23 31 31 H 1.09002 * 109.46598 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46763 * 300.00025 * 1 2 3 33 33 H 1.09002 * 109.47056 * 60.00371 * 1 2 3 34 34 H 1.08000 * 120.81567 * 359.97438 * 6 5 4 35 35 H 1.07993 * 120.39096 * 180.30255 * 7 6 5 36 36 H 1.08002 * 119.55348 * 179.70579 * 8 7 6 37 37 H 1.08004 * 119.65248 * 179.97438 * 10 9 8 38 38 H 0.96996 * 119.99733 * 0.02562 * 13 11 2 39 39 H 1.08995 * 109.47174 * 59.99799 * 14 13 11 40 40 H 1.09003 * 109.47184 * 299.99613 * 14 13 11 41 41 H 1.08997 * 109.37488 * 70.98605 * 17 15 14 42 42 H 1.09001 * 109.11450 * 311.43755 * 17 15 14 43 43 H 1.08997 * 108.51411 * 175.86254 * 18 17 15 44 44 H 1.08999 * 108.38815 * 58.28788 * 18 17 15 45 45 H 1.09000 * 109.48486 * 325.05263 * 19 18 17 46 46 H 1.08994 * 109.49479 * 204.98309 * 19 18 17 47 47 H 1.09005 * 109.36384 * 147.92539 * 20 19 18 48 48 H 1.09002 * 109.26301 * 28.24719 * 20 19 18 49 49 H 1.09001 * 108.94574 * 279.88139 * 21 20 19 50 50 H 1.08994 * 108.95021 * 161.24983 * 21 20 19 51 51 H 0.97002 * 120.00544 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.0956 0.0582 -2.3086 6 6 1.6256 1.3673 -2.3462 7 6 1.7439 2.0754 -3.5311 8 6 2.3095 1.4593 -4.6320 9 7 2.7403 0.2150 -4.5644 10 6 2.6514 -0.4911 -3.4545 11 6 2.0324 -0.7104 1.2304 12 8 2.6531 -1.7466 1.1215 13 7 1.7919 -0.1941 2.4520 14 6 2.2808 -0.8844 3.6482 15 6 1.8753 -0.0946 4.8943 16 1 0.7891 -0.0924 4.9846 17 6 2.4994 -0.7513 6.1571 18 6 1.9105 -0.1767 7.3763 19 6 2.1743 1.3148 7.5592 20 6 1.1364 2.1030 6.7990 21 6 1.6430 2.4127 5.3786 22 7 2.3515 1.2655 4.7782 23 6 3.5046 1.4998 4.0776 24 1 4.2816 0.7501 4.0502 25 6 3.6747 2.7007 3.4027 26 7 2.6320 3.4562 3.1304 27 14 5.3839 3.2448 2.8809 28 1 5.9510 4.1513 3.9114 29 1 5.3005 3.9616 1.5830 30 1 6.2589 2.0540 2.7334 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.1833 1.8216 -1.4719 35 1 1.3943 3.0952 -3.5953 36 1 2.3999 2.0048 -5.5597 37 1 3.0149 -1.5080 -3.4377 38 1 1.2952 0.6345 2.5391 39 1 3.3671 -0.9622 3.6043 40 1 1.8465 -1.8832 3.6943 41 1 3.5756 -0.5784 6.1601 42 1 2.3064 -1.8239 6.1340 43 1 2.3134 -0.7078 8.2387 44 1 0.8327 -0.3363 7.3458 45 1 3.1664 1.5579 7.1787 46 1 2.1188 1.5668 8.6181 47 1 0.9367 3.0376 7.3234 48 1 0.2173 1.5204 6.7360 49 1 2.3220 3.2642 5.4229 50 1 0.7926 2.6727 4.7484 51 1 2.7510 4.2956 2.6591 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485481694.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:27 Heat of formation + Delta-G solvation = -35.239634 kcal Electronic energy + Delta-G solvation = -32064.442313 eV Core-core repulsion = 27964.067428 eV Total energy + Delta-G solvation = -4100.374885 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.89554 -40.78493 -39.73385 -38.85624 -36.02770 -35.21299 -33.83937 -33.21631 -32.67976 -32.44979 -31.01766 -28.65286 -27.32274 -25.82164 -25.21320 -24.76238 -24.08031 -23.16048 -21.51386 -20.90975 -20.79221 -19.49207 -18.85674 -17.83941 -17.73960 -17.29124 -17.18059 -16.78239 -16.51926 -16.24188 -15.90321 -15.67698 -15.38144 -15.21071 -14.97898 -14.77750 -14.65499 -14.47289 -14.20409 -13.97151 -13.71495 -13.41175 -13.31521 -13.15688 -13.13887 -12.94251 -12.83588 -12.73444 -12.62780 -12.38231 -12.27700 -12.04541 -11.55798 -11.38369 -11.29578 -11.19196 -11.06462 -10.86642 -10.68304 -10.62335 -10.37389 -9.86466 -9.48644 -8.53006 -7.81648 -5.25664 0.11147 0.20081 1.37287 1.44426 1.48439 1.51822 1.64651 2.50322 2.63582 2.77328 3.31668 3.47315 3.57665 3.60464 3.70502 3.77123 3.83808 3.92450 4.05424 4.09463 4.11732 4.27559 4.29504 4.43340 4.50837 4.57878 4.58912 4.62090 4.67544 4.74475 4.82476 4.98887 5.02285 5.05115 5.08384 5.09195 5.14143 5.25761 5.27223 5.39680 5.41831 5.43958 5.56291 5.62002 5.68059 5.76866 5.80388 5.87358 6.11910 6.47758 6.66584 6.91979 7.25719 7.28053 7.99523 8.39214 9.20389 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013144 B = 0.003331 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.697908 B = 8404.149802 C = 9398.472744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.070 3.930 3 H 0.099 0.901 4 O -0.301 6.301 5 C 0.066 3.934 6 C -0.172 4.172 7 C -0.123 4.123 8 C 0.050 3.950 9 N -0.468 5.468 10 C 0.056 3.944 11 C 0.512 3.488 12 O -0.582 6.582 13 N -0.677 5.677 14 C 0.134 3.866 15 C 0.174 3.826 16 H 0.062 0.938 17 C -0.129 4.129 18 C -0.100 4.100 19 C -0.104 4.104 20 C -0.132 4.132 21 C 0.189 3.811 22 N -0.586 5.586 23 C -0.235 4.235 24 H 0.042 0.958 25 C -0.015 4.015 26 N -0.908 5.908 27 Si 0.918 3.082 28 H -0.291 1.291 29 H -0.297 1.297 30 H -0.290 1.290 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.153 0.847 35 H 0.172 0.828 36 H 0.189 0.811 37 H 0.164 0.836 38 H 0.413 0.587 39 H 0.039 0.961 40 H 0.068 0.932 41 H 0.040 0.960 42 H 0.071 0.929 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.041 0.959 46 H 0.062 0.938 47 H 0.061 0.939 48 H 0.062 0.938 49 H 0.031 0.969 50 H 0.010 0.990 51 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.037 -1.790 -3.091 9.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.011 3.989 3 H 0.117 0.883 4 O -0.213 6.213 5 C 0.018 3.982 6 C -0.199 4.199 7 C -0.142 4.142 8 C -0.107 4.107 9 N -0.177 5.177 10 C -0.102 4.102 11 C 0.297 3.703 12 O -0.463 6.463 13 N -0.327 5.327 14 C 0.009 3.991 15 C 0.067 3.933 16 H 0.080 0.920 17 C -0.169 4.169 18 C -0.137 4.137 19 C -0.142 4.142 20 C -0.171 4.171 21 C 0.064 3.936 22 N -0.308 5.308 23 C -0.366 4.366 24 H 0.060 0.940 25 C -0.212 4.212 26 N -0.553 5.553 27 Si 0.750 3.250 28 H -0.218 1.218 29 H -0.224 1.224 30 H -0.216 1.216 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.170 0.830 35 H 0.189 0.811 36 H 0.206 0.794 37 H 0.181 0.819 38 H 0.250 0.750 39 H 0.058 0.942 40 H 0.086 0.914 41 H 0.059 0.941 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.060 0.940 46 H 0.081 0.919 47 H 0.079 0.921 48 H 0.081 0.919 49 H 0.049 0.951 50 H 0.028 0.972 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -8.230 -2.955 -3.902 9.576 hybrid contribution 0.962 1.520 0.518 1.872 sum -7.268 -1.435 -3.384 8.145 Atomic orbital electron populations 1.22266 0.89996 1.04420 1.05235 1.22257 0.97572 0.96503 0.82599 0.88319 1.86169 1.81343 1.37923 1.15863 1.20438 0.97603 0.92317 0.87864 1.22119 1.02839 0.93545 1.01378 1.22401 0.97672 1.02258 0.91877 1.23269 0.96349 0.90781 1.00274 1.67758 1.15677 1.08808 1.25477 1.22301 0.99895 1.01419 0.86540 1.20317 0.79773 0.85024 0.85193 1.90648 1.42646 1.25785 1.87212 1.45538 1.55530 1.27296 1.04322 1.21483 0.98383 0.94767 0.84448 1.20790 0.96676 0.84470 0.91409 0.92001 1.21376 0.99973 0.99526 0.96056 1.20266 1.00935 0.95336 0.97206 1.20913 0.99037 0.95483 0.98767 1.21931 0.98474 0.99947 0.96706 1.20767 0.94170 0.88701 0.89938 1.43750 1.26510 1.01213 1.59371 1.18882 0.93876 1.00985 1.22894 0.94001 1.25154 0.97385 1.00045 0.98650 1.70066 1.27523 1.13989 1.43758 0.86041 0.84166 0.77782 0.77059 1.21846 1.22374 1.21616 0.90913 0.88785 0.89279 0.82980 0.81094 0.79376 0.81881 0.75031 0.94213 0.91370 0.94133 0.91000 0.92135 0.91836 0.94014 0.91944 0.92053 0.91927 0.95073 0.97232 0.94252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.80 9.12 71.98 0.66 -3.15 16 2 C 0.07 2.23 2.64 29.85 0.08 2.31 16 3 H 0.10 3.15 6.41 -2.39 -0.02 3.14 16 4 O -0.30 -10.31 9.35 -73.62 -0.69 -11.00 16 5 C 0.07 1.95 6.61 22.60 0.15 2.10 16 6 C -0.17 -4.27 8.30 22.56 0.19 -4.08 16 7 C -0.12 -2.44 10.11 22.35 0.23 -2.22 16 8 C 0.05 1.06 11.18 84.69 0.95 2.01 16 9 N -0.47 -12.63 10.36 -195.43 -2.02 -14.65 16 10 C 0.06 1.62 11.14 84.80 0.94 2.56 16 11 C 0.51 19.77 7.18 87.66 0.63 20.40 16 12 O -0.58 -26.83 16.51 15.95 0.26 -26.57 16 13 N -0.68 -24.85 4.68 -463.05 -2.17 -27.02 16 14 C 0.13 4.86 4.55 86.38 0.39 5.25 16 15 C 0.17 5.91 2.21 46.18 0.10 6.01 16 16 H 0.06 1.94 8.07 -2.39 -0.02 1.93 16 17 C -0.13 -3.86 5.09 29.59 0.15 -3.71 16 18 C -0.10 -2.63 5.16 28.61 0.15 -2.48 16 19 C -0.10 -3.09 5.51 29.76 0.16 -2.93 16 20 C -0.13 -4.06 5.71 30.22 0.17 -3.89 16 21 C 0.19 7.55 4.69 86.49 0.41 7.96 16 22 N -0.59 -23.78 1.75 -673.17 -1.18 -24.96 16 23 C -0.24 -11.23 7.51 84.03 0.63 -10.60 16 24 H 0.04 2.17 6.87 -2.91 -0.02 2.15 16 25 C -0.01 -0.74 4.78 84.86 0.41 -0.33 16 26 N -0.91 -45.28 11.46 21.65 0.25 -45.03 16 27 Si 0.92 43.06 29.59 68.60 2.03 45.09 16 28 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 29 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 30 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 31 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.09 2.01 7.92 -2.39 -0.02 1.99 16 33 H 0.09 1.75 6.83 -2.39 -0.02 1.74 16 34 H 0.15 3.43 5.55 -2.91 -0.02 3.42 16 35 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 36 H 0.19 2.57 8.06 -2.91 -0.02 2.54 16 37 H 0.16 4.43 8.06 -2.91 -0.02 4.41 16 38 H 0.41 15.17 7.86 -92.71 -0.73 14.44 16 39 H 0.04 1.69 6.89 -2.39 -0.02 1.67 16 40 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.07 1.84 8.11 -2.39 -0.02 1.82 16 43 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.06 1.51 7.35 -2.39 -0.02 1.49 16 45 H 0.04 1.51 7.48 -2.39 -0.02 1.49 16 46 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 48 H 0.06 1.74 7.31 -2.39 -0.02 1.72 16 49 H 0.03 1.45 6.70 -2.39 -0.02 1.44 16 50 H 0.01 0.41 8.01 -2.39 -0.02 0.39 16 51 H 0.25 12.37 8.31 -92.71 -0.77 11.60 16 Total: -1.00 -62.14 399.21 3.08 -59.05 By element: Atomic # 1 Polarization: 29.66 SS G_CDS: 0.20 Total: 29.86 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: 6.39 Total: 15.22 kcal Atomic # 7 Polarization: -106.54 SS G_CDS: -5.12 Total: -111.66 kcal Atomic # 8 Polarization: -37.14 SS G_CDS: -0.43 Total: -37.57 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -62.14 3.08 -59.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485481694.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.815 kcal (2) G-P(sol) polarization free energy of solvation -62.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds