Wall clock time and date at job start Wed Apr 1 2020 04:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.46936 * 2 1 4 4 O 1.42903 * 109.47182 * 119.99745 * 2 1 3 5 5 C 1.42899 * 113.99877 * 270.00147 * 4 2 1 6 6 C 1.50703 * 109.47176 * 180.02562 * 5 4 2 7 7 C 1.38658 * 120.78828 * 269.71914 * 6 5 4 8 8 C 1.38206 * 119.15813 * 179.79325 * 7 6 5 9 9 N 1.31862 * 120.76681 * 0.49330 * 8 7 6 10 10 C 1.31872 * 121.72680 * 359.73368 * 9 8 7 11 11 C 1.38206 * 120.76367 * 0.02562 * 10 9 8 12 12 C 1.50693 * 109.47159 * 239.99706 * 2 1 3 13 13 O 1.21280 * 119.99989 * 244.99883 * 12 2 1 14 14 N 1.34779 * 119.99871 * 65.00161 * 12 2 1 15 15 C 1.46928 * 120.63091 * 359.71641 * 14 12 2 16 16 C 1.53625 * 108.53900 * 126.36843 * 15 14 12 17 17 C 1.53039 * 109.24254 * 54.86021 * 16 15 14 18 18 N 1.46500 * 109.45148 * 178.49382 * 17 16 15 19 19 C 1.46490 * 120.00048 * 60.05826 * 18 17 16 20 20 C 1.36940 * 119.99825 * 240.06283 * 18 17 16 21 21 H 1.08001 * 120.00352 * 22.99458 * 20 18 17 22 22 C 1.38806 * 119.99630 * 202.99534 * 20 18 17 23 23 N 1.31619 * 120.00405 * 11.63036 * 22 20 18 24 24 Si 1.86801 * 120.00143 * 191.63754 * 22 20 18 25 25 H 1.48496 * 109.47196 * 89.99513 * 24 22 20 26 26 H 1.48491 * 109.47402 * 209.99872 * 24 22 20 27 27 H 1.48504 * 109.46699 * 329.99924 * 24 22 20 28 28 C 1.53042 * 109.53904 * 298.51016 * 17 16 15 29 29 C 1.46927 * 120.63113 * 179.97438 * 14 12 2 30 30 H 1.09002 * 109.47123 * 300.00277 * 1 2 3 31 31 H 1.08990 * 109.46978 * 60.00243 * 1 2 3 32 32 H 1.08999 * 109.46785 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47356 * 299.99598 * 5 4 2 34 34 H 1.09000 * 109.47534 * 59.99819 * 5 4 2 35 35 H 1.08004 * 120.41654 * 0.02562 * 7 6 5 36 36 H 1.08001 * 119.60991 * 180.20800 * 8 7 6 37 37 H 1.08004 * 119.61895 * 180.02562 * 10 9 8 38 38 H 1.07996 * 120.41768 * 179.97438 * 11 10 9 39 39 H 1.08996 * 109.58353 * 246.20320 * 15 14 12 40 40 H 1.09000 * 109.58640 * 6.63012 * 15 14 12 41 41 H 1.08993 * 109.63608 * 294.86686 * 16 15 14 42 42 H 1.09001 * 109.42411 * 174.72198 * 16 15 14 43 43 H 1.09008 * 109.46268 * 58.52616 * 17 16 15 44 44 H 1.09005 * 109.47429 * 93.84665 * 19 18 17 45 45 H 1.09001 * 109.47403 * 213.85088 * 19 18 17 46 46 H 1.09003 * 109.47585 * 333.85226 * 19 18 17 47 47 H 0.97003 * 120.00588 * 179.97438 * 23 22 20 48 48 H 1.09000 * 109.49275 * 301.41502 * 28 17 16 49 49 H 1.08992 * 109.49994 * 181.32036 * 28 17 16 50 50 H 1.09010 * 109.58569 * 353.37387 * 29 14 12 51 51 H 1.08998 * 109.58787 * 113.65390 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2001 0.1830 2.2941 6 6 2.7015 -0.6280 3.4611 7 6 1.8149 -1.2041 4.3581 8 6 2.3115 -1.9448 5.4140 9 7 3.6108 -2.0980 5.5785 10 6 4.4830 -1.5608 4.7479 11 6 4.0604 -0.8112 3.6665 12 6 2.0324 -0.7104 -1.2304 13 8 2.6530 -1.7467 -1.1213 14 7 1.7919 -0.1942 -2.4519 15 6 1.0362 1.0570 -2.6004 16 6 1.8683 2.0328 -3.4464 17 6 2.2392 1.3621 -4.7710 18 7 3.0024 2.3014 -5.5965 19 6 4.2726 2.8422 -5.1067 20 6 2.5283 2.6738 -6.8261 21 1 1.4731 2.5982 -7.0436 22 6 3.4039 3.1487 -7.7928 23 7 4.7032 3.0294 -7.6196 24 14 2.7384 3.9572 -9.3397 25 1 2.5913 5.4171 -9.1111 26 1 3.6799 3.7246 -10.4641 27 1 1.4147 3.3726 -9.6733 28 6 3.0885 0.1192 -4.4952 29 6 2.2757 -0.8750 -3.6608 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 2.9320 0.9514 2.0450 34 1 1.2538 0.6548 2.5588 35 1 0.7497 -1.0788 4.2311 36 1 1.6274 -2.3996 6.1152 37 1 5.5398 -1.7084 4.9148 38 1 4.7795 -0.3734 2.9901 39 1 0.0880 0.8543 -3.0982 40 1 0.8501 1.4903 -1.6177 41 1 2.7769 2.3016 -2.9078 42 1 1.2831 2.9307 -3.6446 43 1 1.3303 1.0711 -5.2978 44 1 5.0949 2.2279 -5.4739 45 1 4.3946 3.8644 -5.4649 46 1 4.2738 2.8367 -4.0167 47 1 5.3151 3.3609 -8.2953 48 1 3.9857 0.4061 -3.9467 49 1 3.3719 -0.3448 -5.4399 50 1 2.9076 -1.7170 -3.3779 51 1 1.4267 -1.2345 -4.2422 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485763654.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:39 Heat of formation + Delta-G solvation = -10.686750 kcal Electronic energy + Delta-G solvation = -30672.865029 eV Core-core repulsion = 26573.554837 eV Total energy + Delta-G solvation = -4099.310192 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.61575 -40.27698 -38.31334 -37.23794 -35.15151 -33.84709 -32.54727 -31.61406 -31.53719 -30.33955 -29.61200 -27.25825 -26.04581 -25.52459 -23.90047 -23.77407 -22.92403 -22.35549 -21.85539 -20.01249 -18.71455 -17.75872 -17.07271 -16.86217 -16.78620 -16.58626 -15.97648 -15.79846 -15.43657 -15.03475 -14.73240 -14.35773 -14.11794 -14.00396 -13.97867 -13.66076 -13.51977 -13.36522 -13.17519 -13.08642 -12.59513 -12.41381 -12.26694 -12.09005 -11.92242 -11.71794 -11.49753 -11.48387 -10.99457 -10.88928 -10.82697 -10.42504 -10.28786 -10.24909 -10.13667 -10.07510 -9.89034 -9.81992 -9.66548 -9.47386 -9.44831 -8.60581 -8.49984 -6.78550 -5.75099 -3.21976 0.78714 0.81808 2.61621 2.70245 3.35034 3.38406 3.41333 3.42920 3.73383 4.14245 4.23834 4.32560 4.42530 4.44830 4.59026 4.68950 4.73809 4.79088 4.93586 4.94679 4.99411 5.13106 5.26225 5.27224 5.30056 5.34739 5.39794 5.45070 5.46764 5.53146 5.60909 5.73579 5.79397 5.84138 5.95873 5.97488 6.11072 6.20354 6.31037 6.34993 6.48309 6.52946 6.71162 6.76925 6.93632 6.97185 7.36141 7.45619 7.63371 7.70850 7.77742 8.21263 8.37196 9.20892 9.84187 10.33555 11.29605 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024263 B = 0.001935 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.756822 B =14463.999312 C =14797.036237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.071 3.929 3 H 0.088 0.912 4 O -0.349 6.349 5 C 0.097 3.903 6 C -0.043 4.043 7 C -0.152 4.152 8 C 0.094 3.906 9 N -0.483 5.483 10 C 0.096 3.904 11 C -0.148 4.148 12 C 0.515 3.485 13 O -0.527 6.527 14 N -0.603 5.603 15 C 0.103 3.897 16 C -0.149 4.149 17 C 0.179 3.821 18 N -0.596 5.596 19 C 0.165 3.835 20 C -0.255 4.255 21 H 0.068 0.932 22 C 0.001 3.999 23 N -0.907 5.907 24 Si 0.905 3.095 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.280 1.280 28 C -0.144 4.144 29 C 0.115 3.885 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.136 0.864 36 H 0.157 0.843 37 H 0.158 0.842 38 H 0.138 0.862 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.027 0.973 45 H 0.042 0.958 46 H -0.004 1.004 47 H 0.252 0.748 48 H 0.059 0.941 49 H 0.076 0.924 50 H 0.085 0.915 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.296 -4.271 22.426 24.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.010 3.990 3 H 0.106 0.894 4 O -0.267 6.267 5 C 0.021 3.979 6 C -0.051 4.051 7 C -0.172 4.172 8 C -0.062 4.062 9 N -0.193 5.193 10 C -0.060 4.060 11 C -0.168 4.168 12 C 0.302 3.698 13 O -0.402 6.402 14 N -0.338 5.338 15 C -0.020 4.020 16 C -0.189 4.189 17 C 0.071 3.929 18 N -0.317 5.317 19 C 0.020 3.980 20 C -0.385 4.385 21 H 0.086 0.914 22 C -0.197 4.197 23 N -0.552 5.552 24 Si 0.735 3.265 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.205 1.205 28 C -0.185 4.185 29 C -0.007 4.007 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.154 0.846 36 H 0.174 0.826 37 H 0.175 0.825 38 H 0.156 0.844 39 H 0.090 0.910 40 H 0.098 0.902 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.045 0.955 45 H 0.061 0.939 46 H 0.015 0.985 47 H 0.063 0.937 48 H 0.078 0.922 49 H 0.095 0.905 50 H 0.104 0.896 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.462 -5.444 23.052 24.834 hybrid contribution -0.555 1.351 -1.733 2.266 sum -8.017 -4.093 21.319 23.142 Atomic orbital electron populations 1.22429 0.93449 1.04119 1.03615 1.21913 0.95216 0.96395 0.85469 0.89440 1.88118 1.86625 1.33493 1.18449 1.21425 1.00168 0.91695 0.84635 1.19966 0.93707 0.96739 0.94701 1.22081 1.00970 0.98302 0.95815 1.22770 0.91989 0.95391 0.96096 1.67668 1.03397 1.19610 1.28589 1.22798 0.99763 0.93032 0.90430 1.22139 0.95918 0.99734 0.99043 1.20211 0.80055 0.85513 0.84060 1.90704 1.40070 1.23470 1.86002 1.48099 1.55132 1.24928 1.05628 1.22119 0.95056 0.84162 1.00701 1.22582 0.99782 0.98260 0.98257 1.20279 0.94343 0.88366 0.89944 1.43951 1.22648 1.48526 1.16620 1.20734 0.87586 0.98443 0.91239 1.19217 0.91881 1.38229 0.89142 0.91419 1.25044 0.95354 1.01613 0.97686 1.70066 1.00815 1.49361 1.34967 0.86252 0.77935 0.79403 0.82910 1.21563 1.21772 1.20518 1.22496 0.99261 0.97221 0.99478 1.21703 0.98654 0.96008 0.84350 0.91279 0.89888 0.91004 0.91627 0.91664 0.84612 0.82578 0.82465 0.84450 0.90992 0.90213 0.91904 0.90688 0.91863 0.95475 0.93921 0.98539 0.93750 0.92242 0.90519 0.89624 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.44 9.10 37.16 0.34 -1.10 16 2 C 0.07 0.77 2.30 -27.88 -0.06 0.70 16 3 H 0.09 0.77 7.09 -51.93 -0.37 0.40 16 4 O -0.35 -4.24 9.51 -55.09 -0.52 -4.76 16 5 C 0.10 0.83 5.92 36.01 0.21 1.04 16 6 C -0.04 -0.40 5.55 -104.31 -0.58 -0.98 16 7 C -0.15 -1.25 9.82 -39.44 -0.39 -1.63 16 8 C 0.09 0.81 11.18 -17.55 -0.20 0.61 16 9 N -0.48 -5.03 10.36 -13.25 -0.14 -5.17 16 10 C 0.10 0.89 11.18 -17.55 -0.20 0.69 16 11 C -0.15 -1.36 9.82 -39.44 -0.39 -1.75 16 12 C 0.52 7.53 7.12 -10.99 -0.08 7.45 16 13 O -0.53 -9.93 15.92 -14.31 -0.23 -10.16 16 14 N -0.60 -8.22 2.97 -172.53 -0.51 -8.74 16 15 C 0.10 1.16 5.00 -3.48 -0.02 1.14 16 16 C -0.15 -2.20 5.33 -26.39 -0.14 -2.34 16 17 C 0.18 3.34 2.55 -67.89 -0.17 3.16 16 18 N -0.60 -14.11 2.81 -173.44 -0.49 -14.60 16 19 C 0.16 3.93 8.03 59.84 0.48 4.41 16 20 C -0.26 -6.71 9.59 -15.06 -0.14 -6.86 16 21 H 0.07 1.73 7.82 -52.49 -0.41 1.32 16 22 C 0.00 0.04 5.12 -17.43 -0.09 -0.05 16 23 N -0.91 -25.99 10.64 55.49 0.59 -25.39 16 24 Si 0.90 21.36 29.57 -169.99 -5.03 16.33 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 C -0.14 -2.54 5.34 -26.64 -0.14 -2.68 16 29 C 0.12 1.72 6.43 -3.74 -0.02 1.70 16 30 H 0.07 0.41 7.87 -51.93 -0.41 0.00 16 31 H 0.08 0.58 5.39 -51.93 -0.28 0.30 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.49 8.04 -51.93 -0.42 0.07 16 34 H 0.07 0.40 7.83 -51.93 -0.41 0.00 16 35 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 36 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.16 1.04 8.06 -52.48 -0.42 0.62 16 38 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 0.69 4.65 -51.93 -0.24 0.44 16 41 H 0.06 0.99 6.72 -51.93 -0.35 0.64 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.06 1.19 7.86 -51.92 -0.41 0.78 16 44 H 0.03 0.71 7.42 -51.93 -0.39 0.32 16 45 H 0.04 1.10 7.22 -51.93 -0.37 0.73 16 46 H 0.00 -0.08 6.46 -51.93 -0.34 -0.42 16 47 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 48 H 0.06 1.13 7.72 -51.93 -0.40 0.72 16 49 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 50 H 0.09 1.37 7.01 -51.92 -0.36 1.01 16 51 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 402.83 15.07 6.07 6.07 Total: -1.00 -34.07 402.83 -9.93 -44.00 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -8.09 Total: -1.11 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -1.59 Total: 3.52 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: -0.55 Total: -53.90 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -0.75 Total: -14.93 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.07 -9.93 -44.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485763654.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.315 kcal (2) G-P(sol) polarization free energy of solvation -34.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds