Wall clock time and date at job start Wed Apr 1 2020 04:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.46936 * 2 1 4 4 O 1.42903 * 109.47182 * 119.99745 * 2 1 3 5 5 C 1.42899 * 113.99877 * 270.00147 * 4 2 1 6 6 C 1.50703 * 109.47176 * 180.02562 * 5 4 2 7 7 C 1.38658 * 120.78828 * 269.71914 * 6 5 4 8 8 C 1.38206 * 119.15813 * 179.79325 * 7 6 5 9 9 N 1.31862 * 120.76681 * 0.49330 * 8 7 6 10 10 C 1.31872 * 121.72680 * 359.73368 * 9 8 7 11 11 C 1.38206 * 120.76367 * 0.02562 * 10 9 8 12 12 C 1.50693 * 109.47159 * 239.99706 * 2 1 3 13 13 O 1.21280 * 119.99989 * 244.99883 * 12 2 1 14 14 N 1.34779 * 119.99871 * 65.00161 * 12 2 1 15 15 C 1.46928 * 120.63091 * 359.71641 * 14 12 2 16 16 C 1.53625 * 108.53900 * 126.36843 * 15 14 12 17 17 C 1.53039 * 109.24254 * 54.86021 * 16 15 14 18 18 N 1.46500 * 109.45148 * 178.49382 * 17 16 15 19 19 C 1.46490 * 120.00048 * 60.05826 * 18 17 16 20 20 C 1.36940 * 119.99825 * 240.06283 * 18 17 16 21 21 H 1.08001 * 120.00352 * 22.99458 * 20 18 17 22 22 C 1.38806 * 119.99630 * 202.99534 * 20 18 17 23 23 N 1.31619 * 120.00405 * 11.63036 * 22 20 18 24 24 Si 1.86801 * 120.00143 * 191.63754 * 22 20 18 25 25 H 1.48496 * 109.47196 * 89.99513 * 24 22 20 26 26 H 1.48491 * 109.47402 * 209.99872 * 24 22 20 27 27 H 1.48504 * 109.46699 * 329.99924 * 24 22 20 28 28 C 1.53042 * 109.53904 * 298.51016 * 17 16 15 29 29 C 1.46927 * 120.63113 * 179.97438 * 14 12 2 30 30 H 1.09002 * 109.47123 * 300.00277 * 1 2 3 31 31 H 1.08990 * 109.46978 * 60.00243 * 1 2 3 32 32 H 1.08999 * 109.46785 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47356 * 299.99598 * 5 4 2 34 34 H 1.09000 * 109.47534 * 59.99819 * 5 4 2 35 35 H 1.08004 * 120.41654 * 0.02562 * 7 6 5 36 36 H 1.08001 * 119.60991 * 180.20800 * 8 7 6 37 37 H 1.08004 * 119.61895 * 180.02562 * 10 9 8 38 38 H 1.07996 * 120.41768 * 179.97438 * 11 10 9 39 39 H 1.08996 * 109.58353 * 246.20320 * 15 14 12 40 40 H 1.09000 * 109.58640 * 6.63012 * 15 14 12 41 41 H 1.08993 * 109.63608 * 294.86686 * 16 15 14 42 42 H 1.09001 * 109.42411 * 174.72198 * 16 15 14 43 43 H 1.09008 * 109.46268 * 58.52616 * 17 16 15 44 44 H 1.09005 * 109.47429 * 93.84665 * 19 18 17 45 45 H 1.09001 * 109.47403 * 213.85088 * 19 18 17 46 46 H 1.09003 * 109.47585 * 333.85226 * 19 18 17 47 47 H 0.97003 * 120.00588 * 179.97438 * 23 22 20 48 48 H 1.09000 * 109.49275 * 301.41502 * 28 17 16 49 49 H 1.08992 * 109.49994 * 181.32036 * 28 17 16 50 50 H 1.09010 * 109.58569 * 353.37387 * 29 14 12 51 51 H 1.08998 * 109.58787 * 113.65390 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2001 0.1830 2.2941 6 6 2.7015 -0.6280 3.4611 7 6 1.8149 -1.2041 4.3581 8 6 2.3115 -1.9448 5.4140 9 7 3.6108 -2.0980 5.5785 10 6 4.4830 -1.5608 4.7479 11 6 4.0604 -0.8112 3.6665 12 6 2.0324 -0.7104 -1.2304 13 8 2.6530 -1.7467 -1.1213 14 7 1.7919 -0.1942 -2.4519 15 6 1.0362 1.0570 -2.6004 16 6 1.8683 2.0328 -3.4464 17 6 2.2392 1.3621 -4.7710 18 7 3.0024 2.3014 -5.5965 19 6 4.2726 2.8422 -5.1067 20 6 2.5283 2.6738 -6.8261 21 1 1.4731 2.5982 -7.0436 22 6 3.4039 3.1487 -7.7928 23 7 4.7032 3.0294 -7.6196 24 14 2.7384 3.9572 -9.3397 25 1 2.5913 5.4171 -9.1111 26 1 3.6799 3.7246 -10.4641 27 1 1.4147 3.3726 -9.6733 28 6 3.0885 0.1192 -4.4952 29 6 2.2757 -0.8750 -3.6608 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 2.9320 0.9514 2.0450 34 1 1.2538 0.6548 2.5588 35 1 0.7497 -1.0788 4.2311 36 1 1.6274 -2.3996 6.1152 37 1 5.5398 -1.7084 4.9148 38 1 4.7795 -0.3734 2.9901 39 1 0.0880 0.8543 -3.0982 40 1 0.8501 1.4903 -1.6177 41 1 2.7769 2.3016 -2.9078 42 1 1.2831 2.9307 -3.6446 43 1 1.3303 1.0711 -5.2978 44 1 5.0949 2.2279 -5.4739 45 1 4.3946 3.8644 -5.4649 46 1 4.2738 2.8367 -4.0167 47 1 5.3151 3.3609 -8.2953 48 1 3.9857 0.4061 -3.9467 49 1 3.3719 -0.3448 -5.4399 50 1 2.9076 -1.7170 -3.3779 51 1 1.4267 -1.2345 -4.2422 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485763654.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:38 Heat of formation + Delta-G solvation = -31.210678 kcal Electronic energy + Delta-G solvation = -30673.755014 eV Core-core repulsion = 26573.554837 eV Total energy + Delta-G solvation = -4100.200177 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.54077 -41.06943 -39.35428 -38.44313 -36.72953 -34.62560 -33.96835 -32.81799 -32.15351 -31.55266 -31.05258 -28.02703 -27.89599 -26.78271 -25.07591 -24.42186 -24.14572 -23.34968 -22.95305 -21.27081 -19.95971 -18.77061 -18.62104 -17.87652 -17.59104 -17.41651 -17.00261 -16.82407 -16.50229 -16.26265 -15.80004 -15.57884 -15.35621 -15.08967 -14.95471 -14.76634 -14.61678 -14.50971 -14.30018 -13.97674 -13.93531 -13.55739 -13.30915 -13.13710 -12.97381 -12.91780 -12.75996 -12.65011 -12.44593 -12.35577 -12.23921 -12.18388 -12.05099 -11.79554 -11.59337 -11.22784 -11.02049 -10.75529 -10.61488 -10.48020 -10.46042 -10.09601 -9.69340 -8.74908 -7.79868 -5.28307 0.13075 0.19132 1.48264 1.48625 1.53631 1.57480 1.75166 2.52125 2.63570 3.04614 3.33666 3.38841 3.57815 3.62990 3.72375 3.76583 3.85349 3.95310 4.07045 4.09785 4.11436 4.17682 4.19834 4.31075 4.39033 4.39760 4.43060 4.54732 4.69081 4.69637 4.72633 4.77898 4.83134 4.84514 4.87889 4.92561 4.98281 5.00300 5.10554 5.25067 5.26497 5.34149 5.36115 5.50738 5.60284 5.68256 5.73667 5.74816 6.00358 6.35677 6.40894 6.99323 7.12257 7.17873 7.91034 8.35475 9.23372 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024263 B = 0.001935 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.756822 B =14463.999312 C =14797.036237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.074 3.926 3 H 0.114 0.886 4 O -0.380 6.380 5 C 0.095 3.905 6 C -0.059 4.059 7 C -0.152 4.152 8 C 0.084 3.916 9 N -0.511 5.511 10 C 0.083 3.917 11 C -0.162 4.162 12 C 0.508 3.492 13 O -0.580 6.580 14 N -0.602 5.602 15 C 0.107 3.893 16 C -0.138 4.138 17 C 0.172 3.828 18 N -0.611 5.611 19 C 0.183 3.817 20 C -0.255 4.255 21 H 0.077 0.923 22 C -0.059 4.059 23 N -0.943 5.943 24 Si 0.968 3.032 25 H -0.287 1.287 26 H -0.301 1.301 27 H -0.266 1.266 28 C -0.132 4.132 29 C 0.124 3.876 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.161 0.839 36 H 0.181 0.819 37 H 0.173 0.827 38 H 0.144 0.856 39 H 0.096 0.904 40 H 0.119 0.881 41 H 0.053 0.947 42 H 0.082 0.918 43 H 0.066 0.934 44 H -0.007 1.007 45 H 0.015 0.985 46 H 0.026 0.974 47 H 0.245 0.755 48 H 0.040 0.960 49 H 0.050 0.950 50 H 0.070 0.930 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.554 -3.252 23.967 26.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 H 0.131 0.869 4 O -0.299 6.299 5 C 0.019 3.981 6 C -0.068 4.068 7 C -0.171 4.171 8 C -0.073 4.073 9 N -0.221 5.221 10 C -0.073 4.073 11 C -0.182 4.182 12 C 0.297 3.703 13 O -0.459 6.459 14 N -0.335 5.335 15 C -0.014 4.014 16 C -0.177 4.177 17 C 0.065 3.935 18 N -0.333 5.333 19 C 0.038 3.962 20 C -0.386 4.386 21 H 0.094 0.906 22 C -0.253 4.253 23 N -0.590 5.590 24 Si 0.797 3.203 25 H -0.214 1.214 26 H -0.228 1.228 27 H -0.190 1.190 28 C -0.172 4.172 29 C 0.001 3.999 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.113 0.887 35 H 0.179 0.821 36 H 0.198 0.802 37 H 0.190 0.810 38 H 0.162 0.838 39 H 0.114 0.886 40 H 0.137 0.863 41 H 0.072 0.928 42 H 0.100 0.900 43 H 0.084 0.916 44 H 0.012 0.988 45 H 0.034 0.966 46 H 0.045 0.955 47 H 0.054 0.946 48 H 0.059 0.941 49 H 0.069 0.931 50 H 0.089 0.911 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.774 -4.415 24.619 27.234 hybrid contribution 0.458 0.975 -2.159 2.413 sum -10.316 -3.440 22.460 24.954 Atomic orbital electron populations 1.22436 0.90927 1.03894 1.05741 1.22015 0.96885 0.96484 0.83233 0.86852 1.88080 1.87063 1.35281 1.19512 1.21619 1.01954 0.91235 0.83247 1.20266 0.93907 0.97197 0.95391 1.22376 1.02160 0.97441 0.95138 1.23251 0.91846 0.95388 0.96786 1.67686 1.04451 1.20531 1.29430 1.23108 1.00595 0.93110 0.90514 1.22332 0.96551 1.00023 0.99264 1.21088 0.78942 0.85043 0.85255 1.90680 1.42444 1.25996 1.86775 1.48171 1.54881 1.25484 1.04988 1.22321 0.94573 0.82142 1.02405 1.22402 1.00184 0.99060 0.96102 1.20558 0.93624 0.87946 0.91337 1.44203 1.22734 1.49713 1.16656 1.20391 0.87068 0.96076 0.92642 1.19614 0.92263 1.36796 0.89893 0.90560 1.25822 0.95629 1.03053 1.00822 1.70249 1.01947 1.51046 1.35759 0.85245 0.77549 0.78360 0.79170 1.21392 1.22812 1.19011 1.22282 0.98862 0.97533 0.98521 1.21468 0.98713 0.94769 0.84941 0.88424 0.88404 0.92470 0.90757 0.88675 0.82115 0.80236 0.80974 0.83831 0.88606 0.86316 0.92809 0.89952 0.91608 0.98847 0.96634 0.95529 0.94558 0.94144 0.93077 0.91128 0.89741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 9.10 71.98 0.65 -1.31 16 2 C 0.07 1.34 2.30 29.85 0.07 1.41 16 3 H 0.11 1.44 7.09 -2.39 -0.02 1.42 16 4 O -0.38 -8.36 9.51 -129.99 -1.24 -9.59 16 5 C 0.10 1.34 5.92 71.24 0.42 1.77 16 6 C -0.06 -1.00 5.55 -19.67 -0.11 -1.11 16 7 C -0.15 -2.18 9.82 22.36 0.22 -1.96 16 8 C 0.08 1.33 11.18 84.68 0.95 2.28 16 9 N -0.51 -10.40 10.36 -195.84 -2.03 -12.43 16 10 C 0.08 1.51 11.18 84.68 0.95 2.46 16 11 C -0.16 -2.88 9.82 22.36 0.22 -2.66 16 12 C 0.51 13.93 7.12 87.65 0.62 14.56 16 13 O -0.58 -21.88 15.92 15.96 0.25 -21.63 16 14 N -0.60 -14.97 2.97 -818.15 -2.43 -17.40 16 15 C 0.11 1.96 5.00 86.51 0.43 2.39 16 16 C -0.14 -3.67 5.33 30.82 0.16 -3.51 16 17 C 0.17 6.20 2.55 45.02 0.11 6.31 16 18 N -0.61 -28.92 2.81 -702.63 -1.97 -30.90 16 19 C 0.18 8.93 8.03 127.77 1.03 9.96 16 20 C -0.26 -13.38 9.59 84.03 0.81 -12.58 16 21 H 0.08 3.80 7.82 -2.91 -0.02 3.78 16 22 C -0.06 -3.23 5.12 84.86 0.43 -2.80 16 23 N -0.94 -55.71 10.64 21.65 0.23 -55.48 16 24 Si 0.97 44.19 29.57 68.60 2.03 46.22 16 25 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 26 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 27 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 28 C -0.13 -4.67 5.34 30.66 0.16 -4.51 16 29 C 0.12 3.63 6.43 86.35 0.55 4.18 16 30 H 0.10 0.60 7.87 -2.39 -0.02 0.58 16 31 H 0.10 0.81 5.39 -2.39 -0.01 0.80 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 0.89 8.04 -2.39 -0.02 0.87 16 34 H 0.10 0.75 7.83 -2.39 -0.02 0.73 16 35 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 36 H 0.18 1.74 8.06 -2.91 -0.02 1.72 16 37 H 0.17 2.31 8.06 -2.91 -0.02 2.28 16 38 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 39 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.12 1.33 4.65 -2.39 -0.01 1.32 16 41 H 0.05 1.54 6.72 -2.39 -0.02 1.53 16 42 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.07 2.34 7.86 -2.38 -0.02 2.32 16 44 H -0.01 -0.37 7.42 -2.38 -0.02 -0.39 16 45 H 0.01 0.80 7.22 -2.39 -0.02 0.79 16 46 H 0.03 1.10 6.46 -2.39 -0.02 1.09 16 47 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 48 H 0.04 1.56 7.72 -2.39 -0.02 1.54 16 49 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 50 H 0.07 2.30 7.01 -2.38 -0.02 2.29 16 51 H 0.08 2.16 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -77.90 402.83 3.45 -74.45 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 0.92 Total: 11.88 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: 7.69 Total: 14.88 kcal Atomic # 7 Polarization: -110.01 SS G_CDS: -6.20 Total: -116.21 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -0.98 Total: -31.22 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -77.90 3.45 -74.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485763654.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.238 kcal (2) G-P(sol) polarization free energy of solvation -77.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds