Wall clock time and date at job start Wed Apr 1 2020 04:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47379 * 2 1 4 4 O 1.42907 * 109.46999 * 239.99677 * 2 1 3 5 5 C 1.42903 * 113.99444 * 90.00363 * 4 2 1 6 6 C 1.50706 * 109.46823 * 180.02562 * 5 4 2 7 7 C 1.38653 * 120.78089 * 269.71161 * 6 5 4 8 8 C 1.38212 * 119.15414 * 179.79947 * 7 6 5 9 9 N 1.31862 * 120.76706 * 0.48643 * 8 7 6 10 10 C 1.31878 * 121.72700 * 359.74637 * 9 8 7 11 11 C 1.38203 * 120.76084 * 0.02562 * 10 9 8 12 12 C 1.50699 * 109.47361 * 120.00094 * 2 1 3 13 13 O 1.21287 * 120.00147 * 119.99873 * 12 2 1 14 14 N 1.34769 * 120.00192 * 300.00046 * 12 2 1 15 15 C 1.46504 * 119.99870 * 359.97438 * 14 12 2 16 16 C 1.46501 * 120.00782 * 179.97438 * 14 12 2 17 17 C 1.53036 * 109.46441 * 240.03156 * 16 14 12 18 18 C 1.53194 * 109.31324 * 178.59783 * 17 16 14 19 19 N 1.46922 * 108.76282 * 54.65359 * 18 17 16 20 20 C 1.36936 * 120.63017 * 126.40863 * 19 18 17 21 21 H 1.08002 * 120.00140 * 332.60066 * 20 19 18 22 22 C 1.38819 * 119.99824 * 152.60382 * 20 19 18 23 23 N 1.31621 * 119.99540 * 159.34746 * 22 20 19 24 24 Si 1.86793 * 120.00233 * 339.34331 * 22 20 19 25 25 H 1.48494 * 109.47378 * 92.94274 * 24 22 20 26 26 H 1.48499 * 109.46906 * 212.94458 * 24 22 20 27 27 H 1.48499 * 109.47130 * 332.93950 * 24 22 20 28 28 C 1.46923 * 118.73988 * 306.37943 * 19 18 17 29 29 C 1.53043 * 109.46181 * 119.96851 * 16 14 12 30 30 H 1.08996 * 109.47169 * 299.99684 * 1 2 3 31 31 H 1.08999 * 109.47296 * 60.00293 * 1 2 3 32 32 H 1.09005 * 109.46995 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46936 * 299.99198 * 5 4 2 34 34 H 1.08993 * 109.47816 * 59.99776 * 5 4 2 35 35 H 1.07997 * 120.42537 * 0.02562 * 7 6 5 36 36 H 1.08002 * 119.61359 * 180.21300 * 8 7 6 37 37 H 1.07999 * 119.61624 * 179.97438 * 10 9 8 38 38 H 1.07996 * 120.41401 * 179.97438 * 11 10 9 39 39 H 1.09001 * 109.47396 * 89.99797 * 15 14 12 40 40 H 1.08999 * 109.47304 * 209.99925 * 15 14 12 41 41 H 1.09007 * 109.47078 * 330.00056 * 15 14 12 42 42 H 1.09007 * 109.45599 * 359.97438 * 16 14 12 43 43 H 1.09003 * 109.49329 * 298.55650 * 17 16 14 44 44 H 1.08998 * 109.50034 * 58.65229 * 17 16 14 45 45 H 1.08996 * 109.59684 * 294.86215 * 18 17 16 46 46 H 1.08999 * 109.70112 * 174.50021 * 18 17 16 47 47 H 0.97003 * 119.99544 * 180.02562 * 23 22 20 48 48 H 1.09001 * 109.58881 * 293.82832 * 28 19 18 49 49 H 1.09003 * 109.70571 * 173.46840 * 28 19 18 50 50 H 1.08998 * 109.49561 * 301.34472 * 29 16 14 51 51 H 1.08999 * 109.49481 * 61.44145 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.2001 0.1829 -2.2941 6 6 2.7002 -0.6285 -3.4614 7 6 4.0591 -0.8075 -3.6708 8 6 4.4805 -1.5615 -4.7498 9 7 3.6076 -2.0989 -5.5793 10 6 2.3083 -1.9455 -5.4137 11 6 1.8127 -1.2086 -4.3548 12 6 2.0323 -0.7104 1.2304 13 8 2.7296 -1.6965 1.1191 14 7 1.7068 -0.2500 2.4545 15 6 0.8650 0.9414 2.5890 16 6 2.1947 -0.9409 3.6507 17 6 1.0040 -1.4220 4.4830 18 6 1.5176 -2.1742 5.7147 19 7 2.4513 -1.3052 6.4438 20 6 2.2711 -1.0506 7.7772 21 1 1.2800 -1.0874 8.2048 22 6 3.3622 -0.7451 8.5792 23 7 3.1836 -0.1163 9.7215 24 14 5.0837 -1.2267 8.0372 25 1 5.7043 -0.0975 7.2990 26 1 5.9062 -1.5495 9.2307 27 1 5.0092 -2.4160 7.1511 28 6 3.5825 -0.7150 5.7153 29 6 3.0457 0.0206 4.4834 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.2537 0.6546 -2.5589 34 1 2.9319 0.9513 -2.0451 35 1 4.7790 -0.3665 -2.9974 36 1 5.5372 -1.7086 -4.9180 37 1 1.6236 -2.4005 -6.1142 38 1 0.7476 -1.0863 -4.2248 39 1 -0.1831 0.6439 2.6221 40 1 1.1228 1.4666 3.5086 41 1 1.0289 1.6002 1.7361 42 1 2.7996 -1.7977 3.3538 43 1 0.4121 -0.5638 4.8013 44 1 0.3853 -2.0883 3.8818 45 1 2.0328 -3.0818 5.4003 46 1 0.6801 -2.4350 6.3618 47 1 3.9461 0.0975 10.2818 48 1 4.2661 -1.5036 5.4008 49 1 4.1084 -0.0113 6.3606 50 1 3.8805 0.3812 3.8824 51 1 2.4344 0.8651 4.8016 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490418496.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:50 Heat of formation + Delta-G solvation = -4.642494 kcal Electronic energy + Delta-G solvation = -30766.880766 eV Core-core repulsion = 26667.832673 eV Total energy + Delta-G solvation = -4099.048094 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.66110 -40.32255 -38.44097 -37.36537 -35.43501 -33.88094 -32.75109 -31.58131 -31.48459 -30.45305 -29.98418 -27.43477 -27.03262 -25.49955 -23.98072 -23.82210 -22.88741 -22.40481 -21.81661 -19.80964 -19.12074 -17.86033 -17.21566 -16.91613 -16.87802 -16.46732 -16.18739 -15.93898 -15.52419 -15.14114 -15.02301 -14.28587 -14.23060 -14.13530 -14.04041 -13.80426 -13.67457 -13.39248 -13.16017 -13.09744 -12.88849 -12.69644 -12.38903 -12.36484 -12.06846 -11.96165 -11.84425 -11.79041 -11.56856 -10.93075 -10.86403 -10.57961 -10.30591 -10.19840 -10.13223 -10.11892 -9.86103 -9.84861 -9.51750 -9.50814 -9.47093 -8.67056 -8.53181 -7.02206 -5.97665 -3.33633 0.74342 0.77638 2.53108 2.65409 3.30589 3.33210 3.48287 3.52062 3.68653 4.10414 4.18286 4.27295 4.36194 4.50982 4.51143 4.63268 4.66466 4.74421 4.87510 4.91154 4.93315 4.95727 5.12678 5.16358 5.22433 5.23984 5.31550 5.32470 5.40796 5.44508 5.53324 5.56576 5.65258 5.77153 5.78695 5.91095 5.98552 6.02405 6.15753 6.27883 6.30847 6.36116 6.54577 6.56910 6.58589 6.63096 6.75730 6.86402 7.38777 7.59600 7.92862 8.15906 8.29807 8.90729 9.69189 10.06704 11.18123 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020808 B = 0.002093 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.298680 B =13372.993572 C =14089.605565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.073 3.927 3 H 0.087 0.913 4 O -0.349 6.349 5 C 0.098 3.902 6 C -0.044 4.044 7 C -0.149 4.149 8 C 0.097 3.903 9 N -0.483 5.483 10 C 0.095 3.905 11 C -0.152 4.152 12 C 0.512 3.488 13 O -0.521 6.521 14 N -0.606 5.606 15 C 0.070 3.930 16 C 0.146 3.854 17 C -0.139 4.139 18 C 0.150 3.850 19 N -0.606 5.606 20 C -0.260 4.260 21 H 0.086 0.914 22 C 0.023 3.977 23 N -0.908 5.908 24 Si 0.881 3.119 25 H -0.289 1.289 26 H -0.303 1.303 27 H -0.270 1.270 28 C 0.129 3.871 29 C -0.140 4.140 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.137 0.863 36 H 0.158 0.842 37 H 0.157 0.843 38 H 0.136 0.864 39 H 0.061 0.939 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.096 0.904 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.025 0.975 46 H 0.067 0.933 47 H 0.263 0.737 48 H 0.027 0.973 49 H 0.076 0.924 50 H 0.055 0.945 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.770 4.955 -27.758 28.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.011 3.989 3 H 0.104 0.896 4 O -0.267 6.267 5 C 0.022 3.978 6 C -0.052 4.052 7 C -0.169 4.169 8 C -0.060 4.060 9 N -0.192 5.192 10 C -0.062 4.062 11 C -0.171 4.171 12 C 0.298 3.702 13 O -0.396 6.396 14 N -0.340 5.340 15 C -0.073 4.073 16 C 0.044 3.956 17 C -0.179 4.179 18 C 0.024 3.976 19 N -0.329 5.329 20 C -0.388 4.388 21 H 0.104 0.896 22 C -0.176 4.176 23 N -0.551 5.551 24 Si 0.712 3.288 25 H -0.217 1.217 26 H -0.231 1.231 27 H -0.195 1.195 28 C 0.002 3.998 29 C -0.180 4.180 30 H 0.104 0.896 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.155 0.845 36 H 0.175 0.825 37 H 0.175 0.825 38 H 0.154 0.846 39 H 0.080 0.920 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.114 0.886 43 H 0.084 0.916 44 H 0.075 0.925 45 H 0.043 0.957 46 H 0.086 0.914 47 H 0.072 0.928 48 H 0.045 0.955 49 H 0.094 0.906 50 H 0.074 0.926 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.996 3.784 -28.353 29.038 hybrid contribution 0.605 0.715 0.571 1.097 sum -4.391 4.499 -27.782 28.485 Atomic orbital electron populations 1.22499 0.93490 1.04264 1.03801 1.21917 0.95246 0.96206 0.85491 0.89567 1.88133 1.86618 1.33478 1.18437 1.21414 1.00073 0.91667 0.84660 1.19959 0.93713 0.96821 0.94709 1.22131 0.95888 0.99806 0.99042 1.22799 0.99771 0.92970 0.90456 1.67675 1.03379 1.19554 1.28603 1.22784 0.91997 0.95340 0.96067 1.22075 1.00975 0.98289 0.95807 1.20288 0.80748 0.85014 0.84105 1.90724 1.37080 1.25751 1.86023 1.48023 1.51217 1.29119 1.05643 1.21987 0.94719 0.87277 1.03296 1.21162 0.95919 0.95729 0.82788 1.22358 0.96959 1.00897 0.97655 1.20894 0.93618 0.91593 0.91513 1.44394 1.28589 1.53018 1.06946 1.18911 0.94455 1.43097 0.82303 0.89625 1.25284 0.97750 0.99118 0.95434 1.69836 1.30799 1.40725 1.13702 0.86981 0.85758 0.79326 0.76777 1.21658 1.23096 1.19466 1.21313 0.90658 0.95754 0.92030 1.22391 0.99027 0.99029 0.97522 0.89580 0.91414 0.91031 0.91704 0.91743 0.84502 0.82465 0.82541 0.84605 0.92022 0.90047 0.91459 0.88551 0.91568 0.92455 0.95714 0.91431 0.92765 0.95497 0.90591 0.92582 0.91298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.37 9.16 37.16 0.34 -1.03 16 2 C 0.07 0.73 2.34 -27.89 -0.07 0.66 16 3 H 0.09 0.64 7.04 -51.93 -0.37 0.27 16 4 O -0.35 -4.08 9.50 -55.14 -0.52 -4.60 16 5 C 0.10 0.78 5.92 36.01 0.21 0.99 16 6 C -0.04 -0.39 5.55 -104.32 -0.58 -0.97 16 7 C -0.15 -1.30 9.82 -39.44 -0.39 -1.69 16 8 C 0.10 0.86 11.18 -17.55 -0.20 0.67 16 9 N -0.48 -4.92 10.36 -13.25 -0.14 -5.06 16 10 C 0.09 0.80 11.18 -17.54 -0.20 0.60 16 11 C -0.15 -1.20 9.82 -39.44 -0.39 -1.59 16 12 C 0.51 7.30 7.15 -10.99 -0.08 7.22 16 13 O -0.52 -9.90 15.83 -14.36 -0.23 -10.13 16 14 N -0.61 -7.95 2.76 -173.88 -0.48 -8.43 16 15 C 0.07 0.64 7.89 59.85 0.47 1.11 16 16 C 0.15 2.36 2.48 -67.89 -0.17 2.19 16 17 C -0.14 -2.22 5.34 -26.61 -0.14 -2.36 16 18 C 0.15 2.92 6.52 -3.71 -0.02 2.89 16 19 N -0.61 -14.10 2.77 -172.32 -0.48 -14.58 16 20 C -0.26 -7.10 10.04 -15.06 -0.15 -7.25 16 21 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 22 C 0.02 0.66 5.23 -17.43 -0.09 0.57 16 23 N -0.91 -27.46 13.97 55.49 0.78 -26.69 16 24 Si 0.88 22.35 24.35 -169.99 -4.14 18.22 16 25 H -0.29 -7.05 6.62 56.52 0.37 -6.67 16 26 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 27 H -0.27 -6.80 6.63 56.52 0.38 -6.43 16 28 C 0.13 2.78 4.20 -3.71 -0.02 2.77 16 29 C -0.14 -2.42 5.31 -26.61 -0.14 -2.56 16 30 H 0.09 0.54 4.53 -51.93 -0.24 0.30 16 31 H 0.07 0.37 7.87 -51.93 -0.41 -0.04 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.36 7.83 -51.93 -0.41 -0.04 16 34 H 0.06 0.42 8.04 -51.93 -0.42 0.01 16 35 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 36 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.16 0.88 8.06 -52.49 -0.42 0.45 16 38 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.06 0.48 6.95 -51.93 -0.36 0.12 16 40 H 0.08 0.80 6.46 -51.93 -0.34 0.47 16 41 H 0.07 0.43 6.01 -51.93 -0.31 0.12 16 42 H 0.10 1.79 6.90 -51.92 -0.36 1.44 16 43 H 0.07 1.04 7.72 -51.93 -0.40 0.64 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.07 1.29 7.93 -51.93 -0.41 0.88 16 47 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 48 H 0.03 0.59 7.08 -51.93 -0.37 0.23 16 49 H 0.08 1.79 4.50 -51.93 -0.23 1.56 16 50 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 51 H 0.07 1.16 6.72 -51.93 -0.35 0.81 16 LS Contribution 395.78 15.07 5.96 5.96 Total: -1.00 -35.64 395.78 -8.80 -44.44 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -7.96 Total: -1.35 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -1.60 Total: 2.22 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: -0.32 Total: -54.75 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.75 Total: -14.73 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.14 Total: 18.22 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.64 -8.80 -44.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490418496.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.795 kcal (2) G-P(sol) polarization free energy of solvation -35.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds