Wall clock time and date at job start Wed Apr 1 2020 04:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47379 * 2 1 4 4 O 1.42907 * 109.46999 * 239.99677 * 2 1 3 5 5 C 1.42903 * 113.99444 * 90.00363 * 4 2 1 6 6 C 1.50706 * 109.46823 * 180.02562 * 5 4 2 7 7 C 1.38653 * 120.78089 * 269.71161 * 6 5 4 8 8 C 1.38212 * 119.15414 * 179.79947 * 7 6 5 9 9 N 1.31862 * 120.76706 * 0.48643 * 8 7 6 10 10 C 1.31878 * 121.72700 * 359.74637 * 9 8 7 11 11 C 1.38203 * 120.76084 * 0.02562 * 10 9 8 12 12 C 1.50699 * 109.47361 * 120.00094 * 2 1 3 13 13 O 1.21287 * 120.00147 * 119.99873 * 12 2 1 14 14 N 1.34769 * 120.00192 * 300.00046 * 12 2 1 15 15 C 1.46504 * 119.99870 * 359.97438 * 14 12 2 16 16 C 1.46501 * 120.00782 * 179.97438 * 14 12 2 17 17 C 1.53036 * 109.46441 * 240.03156 * 16 14 12 18 18 C 1.53194 * 109.31324 * 178.59783 * 17 16 14 19 19 N 1.46922 * 108.76282 * 54.65359 * 18 17 16 20 20 C 1.36936 * 120.63017 * 126.40863 * 19 18 17 21 21 H 1.08002 * 120.00140 * 332.60066 * 20 19 18 22 22 C 1.38819 * 119.99824 * 152.60382 * 20 19 18 23 23 N 1.31621 * 119.99540 * 159.34746 * 22 20 19 24 24 Si 1.86793 * 120.00233 * 339.34331 * 22 20 19 25 25 H 1.48494 * 109.47378 * 92.94274 * 24 22 20 26 26 H 1.48499 * 109.46906 * 212.94458 * 24 22 20 27 27 H 1.48499 * 109.47130 * 332.93950 * 24 22 20 28 28 C 1.46923 * 118.73988 * 306.37943 * 19 18 17 29 29 C 1.53043 * 109.46181 * 119.96851 * 16 14 12 30 30 H 1.08996 * 109.47169 * 299.99684 * 1 2 3 31 31 H 1.08999 * 109.47296 * 60.00293 * 1 2 3 32 32 H 1.09005 * 109.46995 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46936 * 299.99198 * 5 4 2 34 34 H 1.08993 * 109.47816 * 59.99776 * 5 4 2 35 35 H 1.07997 * 120.42537 * 0.02562 * 7 6 5 36 36 H 1.08002 * 119.61359 * 180.21300 * 8 7 6 37 37 H 1.07999 * 119.61624 * 179.97438 * 10 9 8 38 38 H 1.07996 * 120.41401 * 179.97438 * 11 10 9 39 39 H 1.09001 * 109.47396 * 89.99797 * 15 14 12 40 40 H 1.08999 * 109.47304 * 209.99925 * 15 14 12 41 41 H 1.09007 * 109.47078 * 330.00056 * 15 14 12 42 42 H 1.09007 * 109.45599 * 359.97438 * 16 14 12 43 43 H 1.09003 * 109.49329 * 298.55650 * 17 16 14 44 44 H 1.08998 * 109.50034 * 58.65229 * 17 16 14 45 45 H 1.08996 * 109.59684 * 294.86215 * 18 17 16 46 46 H 1.08999 * 109.70112 * 174.50021 * 18 17 16 47 47 H 0.97003 * 119.99544 * 180.02562 * 23 22 20 48 48 H 1.09001 * 109.58881 * 293.82832 * 28 19 18 49 49 H 1.09003 * 109.70571 * 173.46840 * 28 19 18 50 50 H 1.08998 * 109.49561 * 301.34472 * 29 16 14 51 51 H 1.08999 * 109.49481 * 61.44145 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.2001 0.1829 -2.2941 6 6 2.7002 -0.6285 -3.4614 7 6 4.0591 -0.8075 -3.6708 8 6 4.4805 -1.5615 -4.7498 9 7 3.6076 -2.0989 -5.5793 10 6 2.3083 -1.9455 -5.4137 11 6 1.8127 -1.2086 -4.3548 12 6 2.0323 -0.7104 1.2304 13 8 2.7296 -1.6965 1.1191 14 7 1.7068 -0.2500 2.4545 15 6 0.8650 0.9414 2.5890 16 6 2.1947 -0.9409 3.6507 17 6 1.0040 -1.4220 4.4830 18 6 1.5176 -2.1742 5.7147 19 7 2.4513 -1.3052 6.4438 20 6 2.2711 -1.0506 7.7772 21 1 1.2800 -1.0874 8.2048 22 6 3.3622 -0.7451 8.5792 23 7 3.1836 -0.1163 9.7215 24 14 5.0837 -1.2267 8.0372 25 1 5.7043 -0.0975 7.2990 26 1 5.9062 -1.5495 9.2307 27 1 5.0092 -2.4160 7.1511 28 6 3.5825 -0.7150 5.7153 29 6 3.0457 0.0206 4.4834 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.2537 0.6546 -2.5589 34 1 2.9319 0.9513 -2.0451 35 1 4.7790 -0.3665 -2.9974 36 1 5.5372 -1.7086 -4.9180 37 1 1.6236 -2.4005 -6.1142 38 1 0.7476 -1.0863 -4.2248 39 1 -0.1831 0.6439 2.6221 40 1 1.1228 1.4666 3.5086 41 1 1.0289 1.6002 1.7361 42 1 2.7996 -1.7977 3.3538 43 1 0.4121 -0.5638 4.8013 44 1 0.3853 -2.0883 3.8818 45 1 2.0328 -3.0818 5.4003 46 1 0.6801 -2.4350 6.3618 47 1 3.9461 0.0975 10.2818 48 1 4.2661 -1.5036 5.4008 49 1 4.1084 -0.0113 6.3606 50 1 3.8805 0.3812 3.8824 51 1 2.4344 0.8651 4.8016 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490418496.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:49 Heat of formation + Delta-G solvation = -28.042101 kcal Electronic energy + Delta-G solvation = -30767.895449 eV Core-core repulsion = 26667.832673 eV Total energy + Delta-G solvation = -4100.062777 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.54732 -41.08465 -39.57060 -38.52226 -36.73201 -34.76603 -34.22033 -32.82450 -32.16609 -32.00621 -31.24708 -28.17661 -27.75031 -27.05251 -25.11584 -24.45451 -24.42379 -23.34939 -22.96580 -21.13549 -20.32701 -18.85436 -18.61711 -17.94238 -17.62124 -17.37794 -17.33896 -16.78932 -16.51195 -16.37208 -15.98439 -15.83057 -15.40678 -15.32032 -14.83103 -14.78970 -14.62117 -14.56383 -14.35417 -14.21683 -14.09886 -13.87373 -13.55815 -13.48660 -13.36333 -13.00760 -12.75630 -12.65392 -12.52682 -12.41770 -12.27808 -12.12203 -12.04231 -11.78300 -11.45271 -11.38314 -11.04567 -10.77084 -10.76685 -10.48817 -10.45317 -10.10883 -9.65122 -8.98777 -8.17872 -5.49408 0.11994 0.17845 1.26590 1.39835 1.47816 1.52614 1.72526 2.39072 2.63160 3.03717 3.04727 3.29993 3.40310 3.56647 3.70738 3.75420 3.79811 3.90733 3.92830 4.04882 4.10111 4.17965 4.18659 4.25932 4.30414 4.37993 4.42109 4.43988 4.58272 4.61277 4.65878 4.68357 4.72882 4.79610 4.84441 4.86530 4.90106 4.95044 4.97244 5.02544 5.03901 5.13851 5.26456 5.32881 5.39046 5.50232 5.73624 5.85585 6.00046 6.11879 6.40783 6.88678 6.98244 7.12883 7.59678 8.01027 9.01599 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020808 B = 0.002093 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.298680 B =13372.993572 C =14089.605565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.078 3.922 3 H 0.120 0.880 4 O -0.383 6.383 5 C 0.096 3.904 6 C -0.060 4.060 7 C -0.161 4.161 8 C 0.082 3.918 9 N -0.512 5.512 10 C 0.083 3.917 11 C -0.153 4.153 12 C 0.504 3.496 13 O -0.580 6.580 14 N -0.601 5.601 15 C 0.060 3.940 16 C 0.152 3.848 17 C -0.123 4.123 18 C 0.144 3.856 19 N -0.618 5.618 20 C -0.243 4.243 21 H 0.060 0.940 22 C -0.031 4.031 23 N -0.952 5.952 24 Si 0.938 3.062 25 H -0.274 1.274 26 H -0.310 1.310 27 H -0.270 1.270 28 C 0.123 3.877 29 C -0.126 4.126 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.050 0.950 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.146 0.854 36 H 0.173 0.827 37 H 0.180 0.820 38 H 0.160 0.840 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.103 0.897 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.024 0.976 46 H 0.066 0.934 47 H 0.262 0.738 48 H 0.022 0.978 49 H 0.056 0.944 50 H 0.069 0.931 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.122 6.602 -30.353 31.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.017 3.983 3 H 0.138 0.862 4 O -0.302 6.302 5 C 0.021 3.979 6 C -0.068 4.068 7 C -0.181 4.181 8 C -0.074 4.074 9 N -0.221 5.221 10 C -0.073 4.073 11 C -0.172 4.172 12 C 0.293 3.707 13 O -0.459 6.459 14 N -0.334 5.334 15 C -0.081 4.081 16 C 0.049 3.951 17 C -0.162 4.162 18 C 0.019 3.981 19 N -0.342 5.342 20 C -0.373 4.373 21 H 0.078 0.922 22 C -0.226 4.226 23 N -0.598 5.598 24 Si 0.767 3.233 25 H -0.201 1.201 26 H -0.239 1.239 27 H -0.195 1.195 28 C -0.002 4.002 29 C -0.166 4.166 30 H 0.120 0.880 31 H 0.114 0.886 32 H 0.070 0.930 33 H 0.112 0.888 34 H 0.095 0.905 35 H 0.164 0.836 36 H 0.190 0.810 37 H 0.197 0.803 38 H 0.178 0.822 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.121 0.879 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.042 0.958 46 H 0.085 0.915 47 H 0.071 0.929 48 H 0.040 0.960 49 H 0.074 0.926 50 H 0.087 0.913 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.377 5.460 -31.000 32.116 hybrid contribution 0.944 0.166 1.327 1.637 sum -5.433 5.626 -29.672 30.686 Atomic orbital electron populations 1.22499 0.91261 1.03658 1.05981 1.22002 0.96650 0.96591 0.83009 0.86245 1.88091 1.87064 1.35429 1.19603 1.21611 1.01938 0.91202 0.83163 1.20282 0.93903 0.97222 0.95418 1.22339 0.96536 0.99986 0.99204 1.23121 1.00587 0.93095 0.90594 1.67687 1.04420 1.20526 1.29515 1.23243 0.91864 0.95426 0.96800 1.22367 1.02153 0.97495 0.95194 1.21207 0.79641 0.84433 0.85421 1.90698 1.39813 1.28527 1.86885 1.47971 1.51180 1.29843 1.04382 1.22346 0.94983 0.86065 1.04725 1.20793 0.95481 0.94916 0.83926 1.22156 0.96976 1.01066 0.96049 1.21062 0.92852 0.91579 0.92620 1.44510 1.29636 1.54161 1.05911 1.18875 0.93254 1.41002 0.84165 0.92236 1.25819 1.01015 0.99944 0.95792 1.69942 1.31622 1.42973 1.15279 0.86056 0.81941 0.79267 0.76001 1.20066 1.23916 1.19504 1.21309 0.90187 0.95476 0.93252 1.22196 0.99749 0.98845 0.95819 0.87975 0.88624 0.93043 0.88788 0.90464 0.83641 0.80968 0.80346 0.82226 0.90065 0.90562 0.87905 0.91282 0.90660 0.90672 0.95765 0.91521 0.92941 0.96009 0.92563 0.91268 0.90421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.86 9.16 71.98 0.66 -1.20 16 2 C 0.08 1.28 2.34 29.85 0.07 1.35 16 3 H 0.12 1.14 7.04 -2.39 -0.02 1.12 16 4 O -0.38 -8.00 9.50 -129.94 -1.23 -9.23 16 5 C 0.10 1.22 5.92 71.24 0.42 1.64 16 6 C -0.06 -0.96 5.55 -19.67 -0.11 -1.07 16 7 C -0.16 -2.69 9.82 22.36 0.22 -2.47 16 8 C 0.08 1.44 11.18 84.68 0.95 2.39 16 9 N -0.51 -10.21 10.36 -195.84 -2.03 -12.24 16 10 C 0.08 1.29 11.18 84.68 0.95 2.24 16 11 C -0.15 -2.12 9.82 22.36 0.22 -1.90 16 12 C 0.50 13.30 7.15 87.66 0.63 13.93 16 13 O -0.58 -21.93 15.83 15.99 0.25 -21.67 16 14 N -0.60 -14.07 2.76 -822.42 -2.27 -16.34 16 15 C 0.06 0.83 7.89 127.77 1.01 1.83 16 16 C 0.15 4.67 2.48 45.02 0.11 4.79 16 17 C -0.12 -3.69 5.34 30.67 0.16 -3.52 16 18 C 0.14 5.51 6.52 86.36 0.56 6.07 16 19 N -0.62 -28.62 2.77 -699.11 -1.94 -30.56 16 20 C -0.24 -13.51 10.04 84.04 0.84 -12.67 16 21 H 0.06 3.56 8.06 -2.91 -0.02 3.54 16 22 C -0.03 -1.77 5.23 84.86 0.44 -1.33 16 23 N -0.95 -58.93 13.97 21.65 0.30 -58.63 16 24 Si 0.94 46.95 24.35 68.60 1.67 48.62 16 25 H -0.27 -12.90 6.62 99.48 0.66 -12.25 16 26 H -0.31 -15.79 7.11 99.48 0.71 -15.08 16 27 H -0.27 -13.35 6.63 99.48 0.66 -12.69 16 28 C 0.12 5.25 4.20 86.36 0.36 5.61 16 29 C -0.13 -4.15 5.31 30.67 0.16 -3.99 16 30 H 0.10 0.72 4.53 -2.39 -0.01 0.71 16 31 H 0.09 0.51 7.87 -2.39 -0.02 0.49 16 32 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.09 0.61 7.83 -2.38 -0.02 0.59 16 34 H 0.08 0.75 8.04 -2.39 -0.02 0.73 16 35 H 0.15 2.02 8.06 -2.91 -0.02 1.99 16 36 H 0.17 2.19 8.06 -2.91 -0.02 2.16 16 37 H 0.18 1.72 8.06 -2.91 -0.02 1.69 16 38 H 0.16 1.32 8.06 -2.91 -0.02 1.29 16 39 H 0.08 0.86 6.95 -2.39 -0.02 0.84 16 40 H 0.08 1.19 6.46 -2.39 -0.02 1.17 16 41 H 0.10 0.72 6.01 -2.38 -0.01 0.70 16 42 H 0.07 2.55 6.90 -2.38 -0.02 2.53 16 43 H 0.07 2.15 7.72 -2.39 -0.02 2.13 16 44 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.02 0.93 8.14 -2.39 -0.02 0.92 16 46 H 0.07 2.52 7.93 -2.39 -0.02 2.50 16 47 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 48 H 0.02 0.95 7.08 -2.39 -0.02 0.94 16 49 H 0.06 2.61 4.50 -2.39 -0.01 2.60 16 50 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 51 H 0.08 2.43 6.72 -2.39 -0.02 2.42 16 Total: -1.00 -81.04 395.78 3.25 -77.79 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: 0.83 Total: 10.56 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 7.66 Total: 11.71 kcal Atomic # 7 Polarization: -111.83 SS G_CDS: -5.93 Total: -117.77 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -0.98 Total: -30.91 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 1.67 Total: 48.62 kcal Total: -81.04 3.25 -77.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490418496.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.752 kcal (2) G-P(sol) polarization free energy of solvation -81.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds