Wall clock time and date at job start Wed Apr 1 2020 04:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46993 * 2 1 4 4 O 1.42901 * 109.47346 * 120.00506 * 2 1 3 5 5 C 1.42901 * 114.00077 * 270.00039 * 4 2 1 6 6 C 1.50695 * 109.46919 * 180.02562 * 5 4 2 7 7 C 1.38650 * 120.78944 * 269.71341 * 6 5 4 8 8 C 1.38203 * 119.16466 * 179.80133 * 7 6 5 9 9 N 1.31865 * 120.76093 * 0.48896 * 8 7 6 10 10 C 1.31867 * 121.72794 * 359.74084 * 9 8 7 11 11 C 1.38208 * 120.76770 * 0.02562 * 10 9 8 12 12 C 1.50703 * 109.46835 * 240.00749 * 2 1 3 13 13 O 1.21280 * 119.99682 * 255.84080 * 12 2 1 14 14 N 1.34775 * 120.00338 * 75.84229 * 12 2 1 15 15 C 1.46501 * 119.99706 * 5.39637 * 14 12 2 16 16 C 1.46497 * 120.00083 * 185.39833 * 14 12 2 17 17 C 1.53045 * 109.45981 * 240.02549 * 16 14 12 18 18 C 1.53193 * 109.31253 * 178.60227 * 17 16 14 19 19 N 1.46927 * 108.76294 * 54.65432 * 18 17 16 20 20 C 1.36939 * 120.62663 * 126.40696 * 19 18 17 21 21 H 1.07991 * 120.00032 * 325.00701 * 20 19 18 22 22 C 1.38816 * 119.99579 * 145.00108 * 20 19 18 23 23 N 1.31620 * 119.99526 * 168.64858 * 22 20 19 24 24 Si 1.86798 * 120.00294 * 348.65325 * 22 20 19 25 25 H 1.48503 * 109.47287 * 85.45755 * 24 22 20 26 26 H 1.48502 * 109.46697 * 205.45643 * 24 22 20 27 27 H 1.48494 * 109.47172 * 325.45479 * 24 22 20 28 28 C 1.46928 * 118.74093 * 306.37974 * 19 18 17 29 29 C 1.53041 * 109.45766 * 119.97238 * 16 14 12 30 30 H 1.08995 * 109.47015 * 55.15618 * 1 2 3 31 31 H 1.08999 * 109.47042 * 175.16391 * 1 2 3 32 32 H 1.09004 * 109.46886 * 295.16412 * 1 2 3 33 33 H 1.08999 * 109.46932 * 299.99834 * 5 4 2 34 34 H 1.08997 * 109.46902 * 59.99459 * 5 4 2 35 35 H 1.08008 * 120.41418 * 0.02562 * 7 6 5 36 36 H 1.07994 * 119.61991 * 180.21137 * 8 7 6 37 37 H 1.07999 * 119.61860 * 179.97438 * 10 9 8 38 38 H 1.07991 * 120.42010 * 179.97438 * 11 10 9 39 39 H 1.09003 * 109.47064 * 85.29658 * 15 14 12 40 40 H 1.08993 * 109.47182 * 205.29301 * 15 14 12 41 41 H 1.08997 * 109.47451 * 325.29344 * 15 14 12 42 42 H 1.08995 * 109.46060 * 359.97438 * 16 14 12 43 43 H 1.09002 * 109.49783 * 298.56858 * 17 16 14 44 44 H 1.08998 * 109.49394 * 58.65975 * 17 16 14 45 45 H 1.09004 * 109.59246 * 294.87023 * 18 17 16 46 46 H 1.08996 * 109.70149 * 174.51034 * 18 17 16 47 47 H 0.97000 * 120.00019 * 180.02562 * 23 22 20 48 48 H 1.08991 * 109.58631 * 293.82714 * 28 19 18 49 49 H 1.08995 * 109.70108 * 173.46636 * 28 19 18 50 50 H 1.08992 * 109.49835 * 301.33323 * 29 16 14 51 51 H 1.08999 * 109.49972 * 61.40474 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2002 0.1827 2.2941 6 6 2.7016 -0.6285 3.4609 7 6 1.8151 -1.2047 4.3579 8 6 2.3115 -1.9455 5.4137 9 7 3.6109 -2.0987 5.5780 10 6 4.4831 -1.5615 4.7476 11 6 4.0605 -0.8116 3.6663 12 6 2.0323 -0.7103 -1.2306 13 8 2.4766 -1.8353 -1.1425 14 7 1.9877 -0.0953 -2.4291 15 6 1.5624 1.3037 -2.5191 16 6 2.3646 -0.8258 -3.6417 17 6 3.5464 -0.1230 -4.3138 18 6 3.9600 -0.9089 -5.5620 19 7 2.7844 -1.0737 -6.4278 20 6 2.8270 -0.6919 -7.7422 21 1 3.4008 0.1751 -8.0343 22 6 2.1327 -1.4195 -8.6990 23 7 1.9863 -0.9365 -9.9146 24 14 1.4062 -3.0838 -8.2615 25 1 0.0651 -2.8939 -7.6526 26 1 1.2796 -3.9072 -9.4908 27 1 2.2962 -3.7734 -7.2933 28 6 1.5626 -1.6565 -5.8567 29 6 1.1760 -0.8624 -4.6050 30 1 -0.3633 0.5871 -0.8434 31 1 -0.3633 -1.0240 -0.0866 32 1 -0.3633 0.4370 0.9302 33 1 2.9320 0.9511 2.0451 34 1 1.2539 0.6544 2.5588 35 1 0.7499 -1.0792 4.2310 36 1 1.6276 -2.4003 6.1148 37 1 5.5398 -1.7085 4.9148 38 1 4.7796 -0.3738 2.9899 39 1 2.4171 1.9557 -2.3385 40 1 1.1609 1.4981 -3.5135 41 1 0.7928 1.4983 -1.7722 42 1 2.6503 -1.8441 -3.3781 43 1 3.2539 0.8873 -4.6000 44 1 4.3849 -0.0763 -3.6189 45 1 4.3381 -1.8883 -5.2687 46 1 4.7360 -0.3636 -6.0991 47 1 1.5008 -1.4447 -10.5832 48 1 1.7452 -2.6968 -5.5875 49 1 0.7547 -1.6043 -6.5865 50 1 0.3273 -1.3421 -4.1176 51 1 0.9057 0.1549 -4.8881 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490418497.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:54 Heat of formation + Delta-G solvation = -9.857528 kcal Electronic energy + Delta-G solvation = -30741.948154 eV Core-core repulsion = 26642.673919 eV Total energy + Delta-G solvation = -4099.274234 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.65734 -40.30448 -38.45526 -37.37004 -35.35764 -33.87555 -32.68797 -31.59121 -31.49665 -30.46124 -30.09880 -27.35644 -27.04715 -25.54504 -23.99199 -23.83440 -22.84021 -22.40828 -21.80498 -19.76927 -19.10221 -17.89527 -17.24204 -16.91843 -16.89628 -16.50128 -16.03951 -15.92099 -15.71725 -15.23432 -14.86145 -14.28842 -14.20165 -14.16845 -14.03967 -13.82187 -13.71467 -13.32118 -13.18111 -13.08452 -12.85486 -12.66664 -12.41951 -12.33785 -12.15525 -11.97496 -11.89152 -11.80960 -11.63261 -10.93339 -10.87386 -10.57744 -10.32184 -10.18203 -10.14169 -10.13156 -9.86753 -9.82902 -9.56511 -9.52201 -9.47420 -8.67231 -8.52192 -6.90909 -5.97013 -3.43691 0.73364 0.76736 2.52639 2.63356 3.29145 3.32654 3.46573 3.49925 3.67841 4.09578 4.17493 4.26027 4.35036 4.49824 4.52517 4.62364 4.67487 4.73595 4.85886 4.89878 4.92553 4.95737 5.11320 5.19199 5.22248 5.23534 5.30816 5.31720 5.39787 5.45886 5.53312 5.55624 5.64189 5.77210 5.79531 5.89918 5.99148 6.02179 6.16416 6.27850 6.29934 6.36146 6.53551 6.57273 6.60706 6.63703 6.76015 6.86249 7.38796 7.58834 8.00841 8.15292 8.32833 8.91327 9.68012 10.08608 11.18796 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023266 B = 0.002022 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.175122 B =13844.573743 C =13984.888385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.072 3.928 3 H 0.084 0.916 4 O -0.349 6.349 5 C 0.098 3.902 6 C -0.044 4.044 7 C -0.151 4.151 8 C 0.095 3.905 9 N -0.483 5.483 10 C 0.097 3.903 11 C -0.149 4.149 12 C 0.513 3.487 13 O -0.520 6.520 14 N -0.607 5.607 15 C 0.067 3.933 16 C 0.146 3.854 17 C -0.138 4.138 18 C 0.150 3.850 19 N -0.607 5.607 20 C -0.262 4.262 21 H 0.083 0.917 22 C 0.026 3.974 23 N -0.913 5.913 24 Si 0.893 3.107 25 H -0.286 1.286 26 H -0.303 1.303 27 H -0.270 1.270 28 C 0.125 3.875 29 C -0.139 4.139 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.136 0.864 36 H 0.157 0.843 37 H 0.158 0.842 38 H 0.137 0.863 39 H 0.056 0.944 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.096 0.904 43 H 0.065 0.935 44 H 0.056 0.944 45 H 0.025 0.975 46 H 0.067 0.933 47 H 0.263 0.737 48 H 0.027 0.973 49 H 0.077 0.923 50 H 0.055 0.945 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.274 7.039 28.309 29.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.011 3.989 3 H 0.102 0.898 4 O -0.267 6.267 5 C 0.021 3.979 6 C -0.052 4.052 7 C -0.171 4.171 8 C -0.061 4.061 9 N -0.192 5.192 10 C -0.060 4.060 11 C -0.169 4.169 12 C 0.299 3.701 13 O -0.395 6.395 14 N -0.341 5.341 15 C -0.076 4.076 16 C 0.044 3.956 17 C -0.178 4.178 18 C 0.024 3.976 19 N -0.331 5.331 20 C -0.390 4.390 21 H 0.101 0.899 22 C -0.173 4.173 23 N -0.556 5.556 24 Si 0.724 3.276 25 H -0.214 1.214 26 H -0.232 1.232 27 H -0.195 1.195 28 C -0.002 4.002 29 C -0.179 4.179 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.154 0.846 36 H 0.175 0.825 37 H 0.175 0.825 38 H 0.155 0.845 39 H 0.075 0.925 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.114 0.886 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.043 0.957 46 H 0.086 0.914 47 H 0.073 0.927 48 H 0.045 0.955 49 H 0.095 0.905 50 H 0.074 0.926 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.738 5.718 28.874 29.486 hybrid contribution -0.949 0.013 -0.653 1.152 sum -2.687 5.731 28.221 28.922 Atomic orbital electron populations 1.22268 0.93308 1.04200 1.03161 1.21965 0.95329 0.96174 0.85444 0.89813 1.88141 1.86563 1.33543 1.18482 1.21419 1.00104 0.91669 0.84683 1.19955 0.93715 0.96839 0.94701 1.22084 1.00995 0.98261 0.95789 1.22781 0.91987 0.95291 0.96086 1.67672 1.03402 1.19531 1.28597 1.22798 0.99778 0.92991 0.90433 1.22120 0.95861 0.99855 0.99083 1.20273 0.78913 0.86818 0.84076 1.90721 1.44512 1.18916 1.85315 1.48040 1.66636 1.12745 1.06662 1.21942 0.99805 0.81793 1.04040 1.21161 0.95241 0.96883 0.82317 1.22358 0.96711 1.00493 0.98287 1.20917 0.90132 0.96810 0.89751 1.44348 1.06715 1.73789 1.08270 1.18878 1.31030 1.08458 0.80669 0.89895 1.25471 0.99286 0.97734 0.94837 1.69758 1.43746 1.38482 1.03583 0.86854 0.78837 0.85552 0.76401 1.21377 1.23165 1.19514 1.21410 0.90648 0.94627 0.93465 1.22392 0.96544 1.02047 0.96951 0.90371 0.90898 0.91171 0.91728 0.91674 0.84592 0.82532 0.82461 0.84519 0.92496 0.89794 0.91354 0.88585 0.91657 0.92503 0.95713 0.91404 0.92689 0.95492 0.90532 0.92607 0.91359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 9.28 37.16 0.34 -1.01 16 2 C 0.07 0.72 2.29 -27.88 -0.06 0.66 16 3 H 0.08 0.60 6.94 -51.93 -0.36 0.24 16 4 O -0.35 -4.06 9.55 -54.62 -0.52 -4.58 16 5 C 0.10 0.75 5.92 36.00 0.21 0.97 16 6 C -0.04 -0.38 5.55 -104.32 -0.58 -0.96 16 7 C -0.15 -1.19 9.82 -39.44 -0.39 -1.58 16 8 C 0.10 0.79 11.18 -17.55 -0.20 0.60 16 9 N -0.48 -4.87 10.36 -13.26 -0.14 -5.00 16 10 C 0.10 0.84 11.18 -17.55 -0.20 0.65 16 11 C -0.15 -1.27 9.82 -39.44 -0.39 -1.66 16 12 C 0.51 7.32 6.95 -10.98 -0.08 7.25 16 13 O -0.52 -9.89 15.92 -13.84 -0.22 -10.11 16 14 N -0.61 -7.98 2.76 -173.89 -0.48 -8.46 16 15 C 0.07 0.62 8.94 59.85 0.53 1.15 16 16 C 0.15 2.36 2.47 -67.89 -0.17 2.19 16 17 C -0.14 -2.23 5.34 -26.61 -0.14 -2.38 16 18 C 0.15 2.95 6.52 -3.71 -0.02 2.92 16 19 N -0.61 -14.15 2.70 -172.32 -0.47 -14.62 16 20 C -0.26 -7.19 10.03 -15.06 -0.15 -7.34 16 21 H 0.08 2.44 8.06 -52.49 -0.42 2.01 16 22 C 0.03 0.75 5.35 -17.43 -0.09 0.65 16 23 N -0.91 -27.71 13.97 55.49 0.78 -26.94 16 24 Si 0.89 22.54 24.28 -169.99 -4.13 18.41 16 25 H -0.29 -6.90 6.45 56.52 0.36 -6.53 16 26 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 27 H -0.27 -6.79 6.65 56.52 0.38 -6.41 16 28 C 0.12 2.68 4.16 -3.71 -0.02 2.66 16 29 C -0.14 -2.39 5.32 -26.61 -0.14 -2.53 16 30 H 0.08 0.52 6.15 -51.93 -0.32 0.20 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.40 7.79 -51.93 -0.40 0.00 16 33 H 0.06 0.40 8.04 -51.93 -0.42 -0.02 16 34 H 0.07 0.36 7.75 -51.93 -0.40 -0.05 16 35 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 36 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.16 0.97 8.06 -52.49 -0.42 0.54 16 38 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.83 6.46 -51.93 -0.34 0.49 16 41 H 0.07 0.45 4.75 -51.93 -0.25 0.20 16 42 H 0.10 1.79 6.91 -51.93 -0.36 1.43 16 43 H 0.06 1.03 7.72 -51.93 -0.40 0.63 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 47 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 48 H 0.03 0.60 6.91 -51.93 -0.36 0.24 16 49 H 0.08 1.78 4.71 -51.93 -0.24 1.54 16 50 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 51 H 0.07 1.13 6.72 -51.93 -0.35 0.79 16 LS Contribution 397.96 15.07 6.00 6.00 Total: -1.00 -35.65 397.96 -8.74 -44.39 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -8.04 Total: -1.33 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -1.53 Total: 2.25 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: -0.31 Total: -55.02 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.74 Total: -14.69 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.13 Total: 18.41 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.65 -8.74 -44.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490418497.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.537 kcal (2) G-P(sol) polarization free energy of solvation -35.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds