Wall clock time and date at job start Wed Apr 1 2020 04:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46993 * 2 1 4 4 O 1.42901 * 109.47346 * 120.00506 * 2 1 3 5 5 C 1.42901 * 114.00077 * 270.00039 * 4 2 1 6 6 C 1.50695 * 109.46919 * 180.02562 * 5 4 2 7 7 C 1.38650 * 120.78944 * 269.71341 * 6 5 4 8 8 C 1.38203 * 119.16466 * 179.80133 * 7 6 5 9 9 N 1.31865 * 120.76093 * 0.48896 * 8 7 6 10 10 C 1.31867 * 121.72794 * 359.74084 * 9 8 7 11 11 C 1.38208 * 120.76770 * 0.02562 * 10 9 8 12 12 C 1.50703 * 109.46835 * 240.00749 * 2 1 3 13 13 O 1.21280 * 119.99682 * 255.84080 * 12 2 1 14 14 N 1.34775 * 120.00338 * 75.84229 * 12 2 1 15 15 C 1.46501 * 119.99706 * 5.39637 * 14 12 2 16 16 C 1.46497 * 120.00083 * 185.39833 * 14 12 2 17 17 C 1.53045 * 109.45981 * 240.02549 * 16 14 12 18 18 C 1.53193 * 109.31253 * 178.60227 * 17 16 14 19 19 N 1.46927 * 108.76294 * 54.65432 * 18 17 16 20 20 C 1.36939 * 120.62663 * 126.40696 * 19 18 17 21 21 H 1.07991 * 120.00032 * 325.00701 * 20 19 18 22 22 C 1.38816 * 119.99579 * 145.00108 * 20 19 18 23 23 N 1.31620 * 119.99526 * 168.64858 * 22 20 19 24 24 Si 1.86798 * 120.00294 * 348.65325 * 22 20 19 25 25 H 1.48503 * 109.47287 * 85.45755 * 24 22 20 26 26 H 1.48502 * 109.46697 * 205.45643 * 24 22 20 27 27 H 1.48494 * 109.47172 * 325.45479 * 24 22 20 28 28 C 1.46928 * 118.74093 * 306.37974 * 19 18 17 29 29 C 1.53041 * 109.45766 * 119.97238 * 16 14 12 30 30 H 1.08995 * 109.47015 * 55.15618 * 1 2 3 31 31 H 1.08999 * 109.47042 * 175.16391 * 1 2 3 32 32 H 1.09004 * 109.46886 * 295.16412 * 1 2 3 33 33 H 1.08999 * 109.46932 * 299.99834 * 5 4 2 34 34 H 1.08997 * 109.46902 * 59.99459 * 5 4 2 35 35 H 1.08008 * 120.41418 * 0.02562 * 7 6 5 36 36 H 1.07994 * 119.61991 * 180.21137 * 8 7 6 37 37 H 1.07999 * 119.61860 * 179.97438 * 10 9 8 38 38 H 1.07991 * 120.42010 * 179.97438 * 11 10 9 39 39 H 1.09003 * 109.47064 * 85.29658 * 15 14 12 40 40 H 1.08993 * 109.47182 * 205.29301 * 15 14 12 41 41 H 1.08997 * 109.47451 * 325.29344 * 15 14 12 42 42 H 1.08995 * 109.46060 * 359.97438 * 16 14 12 43 43 H 1.09002 * 109.49783 * 298.56858 * 17 16 14 44 44 H 1.08998 * 109.49394 * 58.65975 * 17 16 14 45 45 H 1.09004 * 109.59246 * 294.87023 * 18 17 16 46 46 H 1.08996 * 109.70149 * 174.51034 * 18 17 16 47 47 H 0.97000 * 120.00019 * 180.02562 * 23 22 20 48 48 H 1.08991 * 109.58631 * 293.82714 * 28 19 18 49 49 H 1.08995 * 109.70108 * 173.46636 * 28 19 18 50 50 H 1.08992 * 109.49835 * 301.33323 * 29 16 14 51 51 H 1.08999 * 109.49972 * 61.40474 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2002 0.1827 2.2941 6 6 2.7016 -0.6285 3.4609 7 6 1.8151 -1.2047 4.3579 8 6 2.3115 -1.9455 5.4137 9 7 3.6109 -2.0987 5.5780 10 6 4.4831 -1.5615 4.7476 11 6 4.0605 -0.8116 3.6663 12 6 2.0323 -0.7103 -1.2306 13 8 2.4766 -1.8353 -1.1425 14 7 1.9877 -0.0953 -2.4291 15 6 1.5624 1.3037 -2.5191 16 6 2.3646 -0.8258 -3.6417 17 6 3.5464 -0.1230 -4.3138 18 6 3.9600 -0.9089 -5.5620 19 7 2.7844 -1.0737 -6.4278 20 6 2.8270 -0.6919 -7.7422 21 1 3.4008 0.1751 -8.0343 22 6 2.1327 -1.4195 -8.6990 23 7 1.9863 -0.9365 -9.9146 24 14 1.4062 -3.0838 -8.2615 25 1 0.0651 -2.8939 -7.6526 26 1 1.2796 -3.9072 -9.4908 27 1 2.2962 -3.7734 -7.2933 28 6 1.5626 -1.6565 -5.8567 29 6 1.1760 -0.8624 -4.6050 30 1 -0.3633 0.5871 -0.8434 31 1 -0.3633 -1.0240 -0.0866 32 1 -0.3633 0.4370 0.9302 33 1 2.9320 0.9511 2.0451 34 1 1.2539 0.6544 2.5588 35 1 0.7499 -1.0792 4.2310 36 1 1.6276 -2.4003 6.1148 37 1 5.5398 -1.7085 4.9148 38 1 4.7796 -0.3738 2.9899 39 1 2.4171 1.9557 -2.3385 40 1 1.1609 1.4981 -3.5135 41 1 0.7928 1.4983 -1.7722 42 1 2.6503 -1.8441 -3.3781 43 1 3.2539 0.8873 -4.6000 44 1 4.3849 -0.0763 -3.6189 45 1 4.3381 -1.8883 -5.2687 46 1 4.7360 -0.3636 -6.0991 47 1 1.5008 -1.4447 -10.5832 48 1 1.7452 -2.6968 -5.5875 49 1 0.7547 -1.6043 -6.5865 50 1 0.3273 -1.3421 -4.1176 51 1 0.9057 0.1549 -4.8881 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490418497.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:53 Heat of formation + Delta-G solvation = -33.222637 kcal Electronic energy + Delta-G solvation = -30742.961341 eV Core-core repulsion = 26642.673919 eV Total energy + Delta-G solvation = -4100.287422 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.52348 -41.07836 -39.57408 -38.52923 -36.68086 -34.70644 -34.23473 -32.76673 -32.16154 -32.00729 -31.39657 -28.04936 -27.83475 -27.06218 -25.17900 -24.43647 -24.37302 -23.35284 -22.95673 -21.11866 -20.28656 -18.88099 -18.64906 -17.94863 -17.59096 -17.39562 -17.32399 -16.74277 -16.51247 -16.49172 -15.97327 -15.75696 -15.41700 -15.34639 -14.83482 -14.72266 -14.64160 -14.54732 -14.37743 -14.16822 -14.14823 -13.75142 -13.63106 -13.45846 -13.39274 -13.02034 -12.84230 -12.67776 -12.51976 -12.46323 -12.29809 -12.18362 -11.99333 -11.78770 -11.52021 -11.38046 -11.05265 -10.76861 -10.76370 -10.48308 -10.46516 -10.10410 -9.65080 -8.86959 -8.18035 -5.60754 0.12420 0.18357 1.26541 1.39165 1.47301 1.51163 1.71705 2.38380 2.63362 3.04918 3.09733 3.26321 3.39903 3.57121 3.70428 3.75903 3.79768 3.91540 3.93592 4.05285 4.10601 4.17241 4.19231 4.23838 4.29511 4.38523 4.42537 4.43902 4.55168 4.62854 4.65953 4.68568 4.72185 4.76200 4.84601 4.87029 4.90014 4.94080 4.97568 5.02552 5.05220 5.13711 5.23099 5.32975 5.38548 5.50310 5.74128 5.90834 5.99804 6.13807 6.40529 6.90300 6.98828 7.12206 7.57502 8.02136 9.01388 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023266 B = 0.002022 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.175122 B =13844.573743 C =13984.888385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.078 3.922 3 H 0.121 0.879 4 O -0.384 6.384 5 C 0.096 3.904 6 C -0.060 4.060 7 C -0.154 4.154 8 C 0.083 3.917 9 N -0.512 5.512 10 C 0.082 3.918 11 C -0.160 4.160 12 C 0.506 3.494 13 O -0.579 6.579 14 N -0.602 5.602 15 C 0.058 3.942 16 C 0.152 3.848 17 C -0.123 4.123 18 C 0.145 3.855 19 N -0.619 5.619 20 C -0.246 4.246 21 H 0.055 0.945 22 C -0.029 4.029 23 N -0.957 5.957 24 Si 0.948 3.052 25 H -0.268 1.268 26 H -0.310 1.310 27 H -0.271 1.271 28 C 0.119 3.881 29 C -0.126 4.126 30 H 0.094 0.906 31 H 0.047 0.953 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.159 0.841 36 H 0.178 0.822 37 H 0.174 0.826 38 H 0.148 0.852 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.102 0.898 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.023 0.977 46 H 0.065 0.935 47 H 0.262 0.738 48 H 0.022 0.978 49 H 0.059 0.941 50 H 0.070 0.930 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.630 8.749 30.924 32.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.018 3.982 3 H 0.139 0.861 4 O -0.303 6.303 5 C 0.020 3.980 6 C -0.068 4.068 7 C -0.173 4.173 8 C -0.074 4.074 9 N -0.222 5.222 10 C -0.074 4.074 11 C -0.179 4.179 12 C 0.294 3.706 13 O -0.458 6.458 14 N -0.335 5.335 15 C -0.083 4.083 16 C 0.049 3.951 17 C -0.162 4.162 18 C 0.019 3.981 19 N -0.344 5.344 20 C -0.376 4.376 21 H 0.073 0.927 22 C -0.224 4.224 23 N -0.603 5.603 24 Si 0.778 3.222 25 H -0.194 1.194 26 H -0.239 1.239 27 H -0.196 1.196 28 C -0.006 4.006 29 C -0.166 4.166 30 H 0.113 0.887 31 H 0.066 0.934 32 H 0.117 0.883 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.176 0.824 36 H 0.195 0.805 37 H 0.191 0.809 38 H 0.166 0.834 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.120 0.880 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.041 0.959 46 H 0.083 0.917 47 H 0.071 0.929 48 H 0.040 0.960 49 H 0.077 0.923 50 H 0.089 0.911 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.106 7.474 31.540 32.562 hybrid contribution -0.451 -0.469 -1.408 1.551 sum -3.557 7.005 30.133 31.140 Atomic orbital electron populations 1.22282 0.91534 1.03273 1.05408 1.22030 0.96390 0.96788 0.83008 0.86119 1.88101 1.86957 1.35546 1.19653 1.21629 1.02012 0.91236 0.83119 1.20282 0.93938 0.97223 0.95387 1.22371 1.02141 0.97561 0.95257 1.23221 0.91880 0.95445 0.96833 1.67682 1.04415 1.20532 1.29559 1.23138 1.00598 0.93099 0.90572 1.22345 0.96478 0.99918 0.99209 1.21185 0.77733 0.86289 0.85381 1.90694 1.47221 1.21648 1.86241 1.47998 1.66037 1.14083 1.05366 1.22275 1.01647 0.79330 1.05025 1.20797 0.94712 0.96143 0.83488 1.22153 0.97357 1.00053 0.96661 1.21062 0.89004 0.97341 0.90667 1.44455 1.08683 1.73905 1.07362 1.18809 1.29154 1.06993 0.82629 0.92747 1.26057 1.00737 1.00775 0.94815 1.69880 1.45807 1.39867 1.04743 0.85939 0.79070 0.81505 0.75686 1.19387 1.23925 1.19600 1.21400 0.89314 0.95027 0.94865 1.22198 0.97383 1.01860 0.95110 0.88733 0.93365 0.88346 0.90096 0.88897 0.82360 0.80467 0.80897 0.83395 0.90554 0.90239 0.88018 0.91359 0.90711 0.90870 0.95884 0.91679 0.92871 0.96040 0.92310 0.91128 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 9.28 71.98 0.67 -1.29 16 2 C 0.08 1.28 2.29 29.85 0.07 1.35 16 3 H 0.12 1.06 6.94 -2.39 -0.02 1.04 16 4 O -0.38 -7.90 9.55 -130.44 -1.25 -9.15 16 5 C 0.10 1.15 5.92 71.23 0.42 1.57 16 6 C -0.06 -0.93 5.55 -19.67 -0.11 -1.04 16 7 C -0.15 -2.13 9.82 22.36 0.22 -1.91 16 8 C 0.08 1.29 11.18 84.68 0.95 2.23 16 9 N -0.51 -10.10 10.36 -195.85 -2.03 -12.13 16 10 C 0.08 1.40 11.18 84.68 0.95 2.34 16 11 C -0.16 -2.54 9.82 22.36 0.22 -2.32 16 12 C 0.51 13.34 6.95 87.66 0.61 13.95 16 13 O -0.58 -21.91 15.92 15.51 0.25 -21.66 16 14 N -0.60 -14.11 2.76 -822.45 -2.27 -16.38 16 15 C 0.06 0.81 8.94 127.77 1.14 1.95 16 16 C 0.15 4.67 2.47 45.02 0.11 4.78 16 17 C -0.12 -3.72 5.34 30.67 0.16 -3.56 16 18 C 0.14 5.59 6.52 86.36 0.56 6.16 16 19 N -0.62 -28.74 2.70 -699.09 -1.89 -30.62 16 20 C -0.25 -13.72 10.03 84.03 0.84 -12.87 16 21 H 0.05 3.30 8.06 -2.92 -0.02 3.28 16 22 C -0.03 -1.66 5.35 84.86 0.45 -1.21 16 23 N -0.96 -59.51 13.97 21.65 0.30 -59.20 16 24 Si 0.95 47.15 24.28 68.60 1.67 48.82 16 25 H -0.27 -12.36 6.45 99.48 0.64 -11.72 16 26 H -0.31 -15.67 7.11 99.48 0.71 -14.96 16 27 H -0.27 -13.33 6.65 99.48 0.66 -12.67 16 28 C 0.12 5.03 4.16 86.36 0.36 5.39 16 29 C -0.13 -4.07 5.32 30.67 0.16 -3.91 16 30 H 0.09 0.77 6.15 -2.39 -0.01 0.76 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.10 0.62 7.79 -2.38 -0.02 0.60 16 33 H 0.08 0.68 8.04 -2.39 -0.02 0.67 16 34 H 0.09 0.58 7.75 -2.39 -0.02 0.56 16 35 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 36 H 0.18 1.74 8.06 -2.91 -0.02 1.72 16 37 H 0.17 2.08 8.06 -2.91 -0.02 2.05 16 38 H 0.15 1.85 8.06 -2.92 -0.02 1.83 16 39 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.08 1.23 6.46 -2.39 -0.02 1.22 16 41 H 0.10 0.75 4.75 -2.39 -0.01 0.74 16 42 H 0.07 2.53 6.91 -2.39 -0.02 2.51 16 43 H 0.07 2.15 7.72 -2.39 -0.02 2.14 16 44 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.02 0.90 8.14 -2.39 -0.02 0.89 16 46 H 0.06 2.51 7.93 -2.39 -0.02 2.49 16 47 H 0.26 15.55 8.31 -92.71 -0.77 14.77 16 48 H 0.02 0.94 6.91 -2.39 -0.02 0.92 16 49 H 0.06 2.68 4.71 -2.39 -0.01 2.67 16 50 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 51 H 0.08 2.40 6.72 -2.39 -0.02 2.39 16 Total: -1.00 -81.25 397.96 3.39 -77.86 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.81 Total: 10.85 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 7.79 Total: 11.61 kcal Atomic # 7 Polarization: -112.45 SS G_CDS: -5.88 Total: -118.33 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -1.00 Total: -30.81 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 1.67 Total: 48.82 kcal Total: -81.25 3.39 -77.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490418497.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.641 kcal (2) G-P(sol) polarization free energy of solvation -81.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds