Wall clock time and date at job start Wed Apr 1 2020 05:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.47042 * 2 1 4 4 O 1.42898 * 109.46972 * 119.99719 * 2 1 3 5 5 C 1.35902 * 117.00017 * 276.64431 * 4 2 1 6 6 C 1.38735 * 120.05673 * 4.99624 * 5 4 2 7 7 C 1.38139 * 119.94378 * 179.74078 * 6 5 4 8 8 C 1.38265 * 120.05638 * 0.50812 * 7 6 5 9 9 C 1.38267 * 120.11259 * 359.76259 * 8 7 6 10 10 C 1.38146 * 120.05564 * 359.97438 * 9 8 7 11 11 C 1.50697 * 109.47142 * 240.00046 * 2 1 3 12 12 O 1.21281 * 119.99360 * 245.00054 * 11 2 1 13 13 N 1.34770 * 120.00263 * 65.00145 * 11 2 1 14 14 C 1.46500 * 119.99832 * 180.02562 * 13 11 2 15 15 C 1.53002 * 109.46950 * 180.02562 * 14 13 11 16 16 N 1.46899 * 109.47081 * 180.02562 * 15 14 13 17 17 C 1.46902 * 110.99987 * 294.29757 * 16 15 14 18 18 C 1.53240 * 109.34366 * 172.75061 * 17 16 15 19 19 N 1.47080 * 108.52248 * 53.82802 * 18 17 16 20 20 C 1.36931 * 120.88275 * 128.84312 * 19 18 17 21 21 H 1.08004 * 120.00226 * 211.31199 * 20 19 18 22 22 C 1.38811 * 120.00226 * 31.29824 * 20 19 18 23 23 N 1.31625 * 119.99647 * 12.23595 * 22 20 19 24 24 Si 1.86798 * 120.00325 * 192.23206 * 22 20 19 25 25 H 1.48497 * 109.47209 * 60.00564 * 24 22 20 26 26 H 1.48499 * 109.47088 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47195 * 300.00049 * 24 22 20 28 28 C 1.47086 * 118.23394 * 308.81628 * 19 18 17 29 29 C 1.46905 * 111.00381 * 169.99866 * 16 15 14 30 30 H 1.08993 * 109.46793 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47280 * 300.00424 * 1 2 3 32 32 H 1.09006 * 109.46508 * 60.00022 * 1 2 3 33 33 H 1.08000 * 120.02399 * 359.97438 * 6 5 4 34 34 H 1.08001 * 119.97241 * 180.23069 * 7 6 5 35 35 H 1.08005 * 119.94489 * 179.74277 * 8 7 6 36 36 H 1.08002 * 119.97537 * 179.97438 * 9 8 7 37 37 H 1.07990 * 120.02970 * 179.97438 * 10 9 8 38 38 H 0.96996 * 120.00002 * 359.97438 * 13 11 2 39 39 H 1.08997 * 109.47088 * 299.99327 * 14 13 11 40 40 H 1.08991 * 109.47610 * 59.99783 * 14 13 11 41 41 H 1.09009 * 109.46971 * 299.99414 * 15 14 13 42 42 H 1.08995 * 109.47727 * 59.99503 * 15 14 13 43 43 H 1.09009 * 109.49195 * 292.70887 * 17 16 15 44 44 H 1.08997 * 109.49485 * 52.78441 * 17 16 15 45 45 H 1.09006 * 109.62311 * 294.11996 * 18 17 16 46 46 H 1.09000 * 109.62792 * 173.54288 * 18 17 16 47 47 H 0.96997 * 119.99806 * 179.97438 * 23 22 20 48 48 H 1.08994 * 109.62723 * 291.47107 * 28 19 18 49 49 H 1.09005 * 109.78275 * 170.99142 * 28 19 18 50 50 H 1.09004 * 109.48906 * 307.21006 * 29 16 15 51 51 H 1.08995 * 109.49151 * 67.28604 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0799 0.0539 2.3124 6 6 1.6051 1.3572 2.3396 7 6 1.6761 2.0927 3.5067 8 6 2.2294 1.5347 4.6443 9 6 2.7085 0.2379 4.6183 10 6 2.6348 -0.5037 3.4551 11 6 2.0324 -0.7104 -1.2304 12 8 2.6530 -1.7466 -1.1213 13 7 1.7920 -0.1942 -2.4519 14 6 2.2799 -0.8852 -3.6481 15 6 1.8759 -0.0946 -4.8942 16 7 2.3645 -0.7877 -6.0936 17 6 3.8329 -0.7945 -6.1362 18 6 4.3030 -1.6769 -7.2975 19 7 3.6472 -1.2150 -8.5304 20 6 4.3780 -0.9451 -9.6565 21 1 4.0486 -0.1794 -10.3434 22 6 5.5422 -1.6553 -9.9152 23 7 5.8195 -2.7394 -9.2221 24 14 6.7154 -1.0726 -11.2470 25 1 7.1943 0.2947 -10.9212 26 1 7.8743 -1.9979 -11.3252 27 1 6.0100 -1.0519 -12.5536 28 6 2.1855 -1.0514 -8.5217 29 6 1.7989 -0.1936 -7.3123 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5139 -0.8901 33 1 1.1768 1.7950 1.4500 34 1 1.3032 3.1060 3.5294 35 1 2.2878 2.1128 5.5547 36 1 3.1406 -0.1956 5.5081 37 1 3.0095 -1.5163 3.4352 38 1 1.2953 0.6344 -2.5392 39 1 3.3662 -0.9637 -3.6046 40 1 1.8450 -1.8835 -3.6939 41 1 0.7895 -0.0156 -4.9379 42 1 2.3111 0.9036 -4.8482 43 1 4.1973 0.2226 -6.2816 44 1 4.2222 -1.1901 -5.1981 45 1 4.0291 -2.7139 -7.1035 46 1 5.3845 -1.5948 -7.4052 47 1 6.6329 -3.2358 -9.4031 48 1 1.7082 -2.0283 -8.4454 49 1 1.8641 -0.5575 -9.4387 50 1 0.7129 -0.1535 -7.2271 51 1 2.1915 0.8150 -7.4412 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490514671.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:30 Heat of formation + Delta-G solvation = -8.581606 kcal Electronic energy + Delta-G solvation = -29716.673519 eV Core-core repulsion = 25617.454613 eV Total energy + Delta-G solvation = -4099.218906 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.96913 -39.63589 -38.27880 -37.59803 -35.46878 -34.08984 -32.70893 -31.44538 -31.12739 -30.04215 -29.97047 -28.81603 -26.12034 -24.94002 -23.45160 -23.08962 -22.65389 -22.34059 -21.38009 -20.50904 -19.13082 -18.80423 -17.66477 -16.87424 -16.58197 -16.17649 -16.08407 -15.67751 -15.36457 -14.90571 -14.84861 -14.55293 -14.35617 -14.21415 -13.83861 -13.67666 -13.58819 -13.48241 -13.42726 -13.01370 -12.94031 -12.82755 -12.52139 -12.26254 -11.95768 -11.68205 -11.51670 -11.45083 -11.32181 -11.19980 -11.02830 -10.75811 -10.49619 -10.32273 -10.07419 -10.00782 -9.79216 -9.63561 -9.39939 -9.21443 -8.58867 -8.51104 -7.92306 -6.60028 -5.77799 -3.25037 0.93376 1.05072 2.25177 2.33492 3.23555 3.37927 3.39976 3.43554 3.44302 4.12318 4.26761 4.41934 4.43500 4.46638 4.49818 4.51343 4.73274 4.88413 4.94317 4.98312 5.08795 5.11092 5.16868 5.26694 5.40563 5.41500 5.46128 5.56320 5.61233 5.78892 5.88254 5.90153 5.91309 6.00182 6.00263 6.08202 6.14305 6.16841 6.23359 6.31085 6.36022 6.53262 6.67811 6.92585 6.97430 7.20465 7.22564 7.51444 7.62629 7.68931 7.80415 7.95186 8.46731 9.22200 9.83668 10.44768 11.30916 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023031 B = 0.001625 C = 0.001577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.453517 B =17229.206005 C =17749.769462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.068 3.932 3 H 0.098 0.902 4 O -0.284 6.284 5 C 0.132 3.868 6 C -0.214 4.214 7 C -0.080 4.080 8 C -0.161 4.161 9 C -0.080 4.080 10 C -0.149 4.149 11 C 0.516 3.484 12 O -0.511 6.511 13 N -0.723 5.723 14 C 0.122 3.878 15 C 0.045 3.955 16 N -0.529 5.529 17 C 0.030 3.970 18 C 0.180 3.820 19 N -0.594 5.594 20 C -0.257 4.257 21 H 0.063 0.937 22 C 0.006 3.994 23 N -0.902 5.902 24 Si 0.904 3.096 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.282 1.282 28 C 0.148 3.852 29 C 0.046 3.954 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.130 0.870 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.129 0.871 37 H 0.133 0.867 38 H 0.399 0.601 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.032 0.968 43 H 0.026 0.974 44 H 0.064 0.936 45 H 0.029 0.971 46 H 0.085 0.915 47 H 0.255 0.745 48 H 0.026 0.974 49 H 0.056 0.944 50 H 0.062 0.938 51 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.440 11.375 25.499 30.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.008 3.992 3 H 0.116 0.884 4 O -0.196 6.196 5 C 0.086 3.914 6 C -0.232 4.232 7 C -0.099 4.099 8 C -0.179 4.179 9 C -0.098 4.098 10 C -0.168 4.168 11 C 0.300 3.700 12 O -0.384 6.384 13 N -0.377 5.377 14 C -0.001 4.001 15 C -0.084 4.084 16 N -0.254 5.254 17 C -0.099 4.099 18 C 0.054 3.946 19 N -0.318 5.318 20 C -0.387 4.387 21 H 0.081 0.919 22 C -0.193 4.193 23 N -0.546 5.546 24 Si 0.734 3.266 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.208 1.208 28 C 0.021 3.979 29 C -0.083 4.083 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.147 0.853 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.147 0.853 37 H 0.151 0.849 38 H 0.232 0.768 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.050 0.950 43 H 0.044 0.956 44 H 0.082 0.918 45 H 0.047 0.953 46 H 0.103 0.897 47 H 0.065 0.935 48 H 0.044 0.956 49 H 0.074 0.926 50 H 0.080 0.920 51 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -11.916 9.773 25.499 29.794 hybrid contribution 0.576 1.773 -0.810 2.032 sum -11.340 11.546 24.688 29.520 Atomic orbital electron populations 1.22357 0.92481 1.04707 1.03894 1.22187 0.95822 0.96951 0.84272 0.88449 1.86232 1.80765 1.37513 1.15133 1.19103 0.95288 0.90456 0.86550 1.21319 1.07219 0.94548 1.00144 1.20957 0.97270 0.99395 0.92229 1.21091 1.02042 0.96013 0.98756 1.21005 0.97628 0.94052 0.97101 1.20519 1.03510 1.01685 0.91080 1.19959 0.80410 0.85704 0.83930 1.90785 1.38734 1.22729 1.86195 1.45803 1.58343 1.27968 1.05618 1.21438 1.00228 0.96650 0.81822 1.22191 1.00259 0.95195 0.90731 1.61870 1.09446 1.53302 1.00800 1.23025 0.85777 0.99911 1.01170 1.20823 0.98101 0.93667 0.81996 1.44044 0.99916 1.78688 1.09122 1.19102 1.05126 1.13767 1.00687 0.91942 1.25175 1.00515 0.95250 0.98403 1.69981 1.25961 1.16030 1.42647 0.86352 0.80573 0.77871 0.81802 1.21066 1.21566 1.20836 1.20982 0.86683 0.96395 0.93799 1.22632 0.97628 0.96824 0.91203 0.90425 0.90517 0.90138 0.85269 0.85755 0.85900 0.85267 0.84940 0.76762 0.90833 0.90144 0.90809 0.94953 0.95602 0.91785 0.95320 0.89717 0.93474 0.95604 0.92555 0.91987 0.95373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.10 9.09 37.16 0.34 -0.76 16 2 C 0.07 0.60 2.64 -27.88 -0.07 0.53 16 3 H 0.10 0.63 6.39 -51.93 -0.33 0.30 16 4 O -0.28 -3.32 9.34 -39.29 -0.37 -3.69 16 5 C 0.13 1.30 6.58 -39.21 -0.26 1.05 16 6 C -0.21 -1.65 8.18 -39.43 -0.32 -1.97 16 7 C -0.08 -0.54 10.04 -39.61 -0.40 -0.94 16 8 C -0.16 -1.07 10.04 -39.56 -0.40 -1.47 16 9 C -0.08 -0.58 10.04 -39.60 -0.40 -0.98 16 10 C -0.15 -1.37 9.99 -39.43 -0.39 -1.77 16 11 C 0.52 6.23 7.18 -10.99 -0.08 6.15 16 12 O -0.51 -8.80 16.51 -14.31 -0.24 -9.04 16 13 N -0.72 -7.09 5.52 -60.30 -0.33 -7.42 16 14 C 0.12 1.55 5.61 -4.04 -0.02 1.52 16 15 C 0.05 0.57 5.08 -3.82 -0.02 0.55 16 16 N -0.53 -8.99 4.63 -234.31 -1.08 -10.08 16 17 C 0.03 0.58 5.46 -3.70 -0.02 0.56 16 18 C 0.18 4.37 5.36 -3.60 -0.02 4.35 16 19 N -0.59 -15.05 3.02 -172.01 -0.52 -15.57 16 20 C -0.26 -7.08 9.61 -15.06 -0.14 -7.23 16 21 H 0.06 1.68 7.86 -52.48 -0.41 1.27 16 22 C 0.01 0.16 5.02 -17.43 -0.09 0.07 16 23 N -0.90 -26.39 11.21 55.49 0.62 -25.77 16 24 Si 0.90 21.71 29.57 -169.99 -5.03 16.69 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 28 C 0.15 3.12 6.69 -3.60 -0.02 3.09 16 29 C 0.05 0.80 5.62 -3.70 -0.02 0.78 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.41 6.76 -51.93 -0.35 0.05 16 32 H 0.08 0.32 7.92 -51.93 -0.41 -0.09 16 33 H 0.13 0.73 5.38 -52.49 -0.28 0.45 16 34 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 35 H 0.12 0.56 8.06 -52.48 -0.42 0.13 16 36 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 37 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.40 2.47 8.25 -40.82 -0.34 2.13 16 39 H 0.07 1.08 6.40 -51.93 -0.33 0.75 16 40 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.07 0.79 7.97 -51.92 -0.41 0.37 16 42 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 43 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 44 H 0.06 1.14 6.16 -51.93 -0.32 0.82 16 45 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.08 2.27 6.34 -51.93 -0.33 1.94 16 47 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 48 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 49 H 0.06 1.13 7.96 -51.93 -0.41 0.72 16 50 H 0.06 0.89 7.99 -51.93 -0.41 0.47 16 51 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 406.24 15.07 6.12 6.12 Total: -1.00 -34.34 406.24 -11.30 -45.64 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -8.13 Total: -0.43 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: -2.34 Total: 3.55 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: -1.31 Total: -58.84 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: -0.60 Total: -12.73 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.34 -11.30 -45.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490514671.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.059 kcal (2) G-P(sol) polarization free energy of solvation -34.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds