Wall clock time and date at job start Wed Apr 1 2020 05:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.47042 * 2 1 4 4 O 1.42898 * 109.46972 * 119.99719 * 2 1 3 5 5 C 1.35902 * 117.00017 * 276.64431 * 4 2 1 6 6 C 1.38735 * 120.05673 * 4.99624 * 5 4 2 7 7 C 1.38139 * 119.94378 * 179.74078 * 6 5 4 8 8 C 1.38265 * 120.05638 * 0.50812 * 7 6 5 9 9 C 1.38267 * 120.11259 * 359.76259 * 8 7 6 10 10 C 1.38146 * 120.05564 * 359.97438 * 9 8 7 11 11 C 1.50697 * 109.47142 * 240.00046 * 2 1 3 12 12 O 1.21281 * 119.99360 * 245.00054 * 11 2 1 13 13 N 1.34770 * 120.00263 * 65.00145 * 11 2 1 14 14 C 1.46500 * 119.99832 * 180.02562 * 13 11 2 15 15 C 1.53002 * 109.46950 * 180.02562 * 14 13 11 16 16 N 1.46899 * 109.47081 * 180.02562 * 15 14 13 17 17 C 1.46902 * 110.99987 * 294.29757 * 16 15 14 18 18 C 1.53240 * 109.34366 * 172.75061 * 17 16 15 19 19 N 1.47080 * 108.52248 * 53.82802 * 18 17 16 20 20 C 1.36931 * 120.88275 * 128.84312 * 19 18 17 21 21 H 1.08004 * 120.00226 * 211.31199 * 20 19 18 22 22 C 1.38811 * 120.00226 * 31.29824 * 20 19 18 23 23 N 1.31625 * 119.99647 * 12.23595 * 22 20 19 24 24 Si 1.86798 * 120.00325 * 192.23206 * 22 20 19 25 25 H 1.48497 * 109.47209 * 60.00564 * 24 22 20 26 26 H 1.48499 * 109.47088 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47195 * 300.00049 * 24 22 20 28 28 C 1.47086 * 118.23394 * 308.81628 * 19 18 17 29 29 C 1.46905 * 111.00381 * 169.99866 * 16 15 14 30 30 H 1.08993 * 109.46793 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47280 * 300.00424 * 1 2 3 32 32 H 1.09006 * 109.46508 * 60.00022 * 1 2 3 33 33 H 1.08000 * 120.02399 * 359.97438 * 6 5 4 34 34 H 1.08001 * 119.97241 * 180.23069 * 7 6 5 35 35 H 1.08005 * 119.94489 * 179.74277 * 8 7 6 36 36 H 1.08002 * 119.97537 * 179.97438 * 9 8 7 37 37 H 1.07990 * 120.02970 * 179.97438 * 10 9 8 38 38 H 0.96996 * 120.00002 * 359.97438 * 13 11 2 39 39 H 1.08997 * 109.47088 * 299.99327 * 14 13 11 40 40 H 1.08991 * 109.47610 * 59.99783 * 14 13 11 41 41 H 1.09009 * 109.46971 * 299.99414 * 15 14 13 42 42 H 1.08995 * 109.47727 * 59.99503 * 15 14 13 43 43 H 1.09009 * 109.49195 * 292.70887 * 17 16 15 44 44 H 1.08997 * 109.49485 * 52.78441 * 17 16 15 45 45 H 1.09006 * 109.62311 * 294.11996 * 18 17 16 46 46 H 1.09000 * 109.62792 * 173.54288 * 18 17 16 47 47 H 0.96997 * 119.99806 * 179.97438 * 23 22 20 48 48 H 1.08994 * 109.62723 * 291.47107 * 28 19 18 49 49 H 1.09005 * 109.78275 * 170.99142 * 28 19 18 50 50 H 1.09004 * 109.48906 * 307.21006 * 29 16 15 51 51 H 1.08995 * 109.49151 * 67.28604 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0799 0.0539 2.3124 6 6 1.6051 1.3572 2.3396 7 6 1.6761 2.0927 3.5067 8 6 2.2294 1.5347 4.6443 9 6 2.7085 0.2379 4.6183 10 6 2.6348 -0.5037 3.4551 11 6 2.0324 -0.7104 -1.2304 12 8 2.6530 -1.7466 -1.1213 13 7 1.7920 -0.1942 -2.4519 14 6 2.2799 -0.8852 -3.6481 15 6 1.8759 -0.0946 -4.8942 16 7 2.3645 -0.7877 -6.0936 17 6 3.8329 -0.7945 -6.1362 18 6 4.3030 -1.6769 -7.2975 19 7 3.6472 -1.2150 -8.5304 20 6 4.3780 -0.9451 -9.6565 21 1 4.0486 -0.1794 -10.3434 22 6 5.5422 -1.6553 -9.9152 23 7 5.8195 -2.7394 -9.2221 24 14 6.7154 -1.0726 -11.2470 25 1 7.1943 0.2947 -10.9212 26 1 7.8743 -1.9979 -11.3252 27 1 6.0100 -1.0519 -12.5536 28 6 2.1855 -1.0514 -8.5217 29 6 1.7989 -0.1936 -7.3123 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5139 -0.8901 33 1 1.1768 1.7950 1.4500 34 1 1.3032 3.1060 3.5294 35 1 2.2878 2.1128 5.5547 36 1 3.1406 -0.1956 5.5081 37 1 3.0095 -1.5163 3.4352 38 1 1.2953 0.6344 -2.5392 39 1 3.3662 -0.9637 -3.6046 40 1 1.8450 -1.8835 -3.6939 41 1 0.7895 -0.0156 -4.9379 42 1 2.3111 0.9036 -4.8482 43 1 4.1973 0.2226 -6.2816 44 1 4.2222 -1.1901 -5.1981 45 1 4.0291 -2.7139 -7.1035 46 1 5.3845 -1.5948 -7.4052 47 1 6.6329 -3.2358 -9.4031 48 1 1.7082 -2.0283 -8.4454 49 1 1.8641 -0.5575 -9.4387 50 1 0.7129 -0.1535 -7.2271 51 1 2.1915 0.8150 -7.4412 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490514671.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:29 Heat of formation + Delta-G solvation = -31.924868 kcal Electronic energy + Delta-G solvation = -29717.685759 eV Core-core repulsion = 25617.454613 eV Total energy + Delta-G solvation = -4100.231146 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.70933 -40.50140 -39.70093 -38.29704 -36.85334 -35.53704 -33.63974 -32.99571 -31.75195 -31.66351 -30.65958 -30.08482 -27.69313 -25.79793 -24.91226 -24.27201 -23.74772 -23.14952 -22.56277 -21.39995 -20.81968 -19.43195 -18.74309 -18.45478 -17.51206 -17.03034 -16.97721 -16.70100 -16.40276 -16.30612 -15.93189 -15.61302 -15.54750 -15.31855 -15.15668 -15.07007 -14.89319 -14.51449 -14.39681 -14.15851 -14.10216 -13.60078 -13.30320 -13.20822 -12.96171 -12.88334 -12.82460 -12.64287 -12.57473 -12.44255 -12.29082 -12.08955 -12.03520 -11.87950 -11.75071 -11.56902 -11.43512 -10.95727 -10.60099 -10.22572 -9.94319 -9.29795 -9.19319 -8.62678 -7.88030 -5.39095 0.39488 0.47538 1.41288 1.45869 1.47644 1.48326 1.55148 2.46601 2.50241 2.84867 3.06008 3.28505 3.50554 3.67892 3.69448 3.82702 3.86274 3.93911 4.00502 4.06820 4.29385 4.29763 4.34986 4.40828 4.45606 4.51889 4.54584 4.62325 4.64489 4.66115 4.71819 4.76649 4.81647 4.91616 4.98653 5.04522 5.08456 5.11872 5.20307 5.26529 5.35313 5.36147 5.48466 5.60945 5.61444 5.66559 5.83945 6.13490 6.22837 6.32195 6.38816 6.48593 7.09976 7.13312 7.82701 8.39195 9.18427 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023031 B = 0.001625 C = 0.001577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.453517 B =17229.206005 C =17749.769462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.070 3.930 3 H 0.127 0.873 4 O -0.319 6.319 5 C 0.106 3.894 6 C -0.215 4.215 7 C -0.082 4.082 8 C -0.163 4.163 9 C -0.084 4.084 10 C -0.177 4.177 11 C 0.512 3.488 12 O -0.574 6.574 13 N -0.702 5.702 14 C 0.129 3.871 15 C 0.055 3.945 16 N -0.544 5.544 17 C 0.049 3.951 18 C 0.187 3.813 19 N -0.613 5.613 20 C -0.267 4.267 21 H 0.068 0.932 22 C -0.050 4.050 23 N -0.938 5.938 24 Si 0.971 3.029 25 H -0.277 1.277 26 H -0.295 1.295 27 H -0.273 1.273 28 C 0.140 3.860 29 C 0.059 3.941 30 H 0.058 0.942 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.152 0.848 34 H 0.153 0.847 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.121 0.879 38 H 0.421 0.579 39 H 0.049 0.951 40 H 0.060 0.940 41 H 0.107 0.893 42 H 0.050 0.950 43 H 0.024 0.976 44 H 0.073 0.927 45 H -0.005 1.005 46 H 0.050 0.950 47 H 0.250 0.750 48 H 0.013 0.987 49 H 0.063 0.937 50 H 0.102 0.898 51 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.667 15.195 26.493 33.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.011 3.989 3 H 0.144 0.856 4 O -0.233 6.233 5 C 0.061 3.939 6 C -0.233 4.233 7 C -0.100 4.100 8 C -0.181 4.181 9 C -0.102 4.102 10 C -0.195 4.195 11 C 0.298 3.702 12 O -0.452 6.452 13 N -0.356 5.356 14 C 0.005 3.995 15 C -0.073 4.073 16 N -0.269 5.269 17 C -0.080 4.080 18 C 0.061 3.939 19 N -0.338 5.338 20 C -0.397 4.397 21 H 0.086 0.914 22 C -0.246 4.246 23 N -0.583 5.583 24 Si 0.799 3.201 25 H -0.202 1.202 26 H -0.222 1.222 27 H -0.199 1.199 28 C 0.015 3.985 29 C -0.070 4.070 30 H 0.077 0.923 31 H 0.109 0.891 32 H 0.129 0.871 33 H 0.169 0.831 34 H 0.171 0.829 35 H 0.165 0.835 36 H 0.165 0.835 37 H 0.139 0.861 38 H 0.259 0.741 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.125 0.875 42 H 0.068 0.932 43 H 0.043 0.957 44 H 0.092 0.908 45 H 0.013 0.987 46 H 0.068 0.932 47 H 0.059 0.941 48 H 0.031 0.969 49 H 0.082 0.918 50 H 0.121 0.879 51 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -14.210 13.665 26.496 33.026 hybrid contribution 1.205 0.579 -1.064 1.708 sum -13.005 14.243 25.433 31.919 Atomic orbital electron populations 1.22373 0.90171 1.04183 1.06052 1.22337 0.97356 0.97226 0.81977 0.85581 1.86181 1.81611 1.39196 1.16284 1.19354 0.96786 0.91611 0.86109 1.21576 1.06704 0.93528 1.01504 1.21363 0.96468 1.00514 0.91685 1.21471 1.01013 0.95735 0.99873 1.21275 0.97457 0.94498 0.96988 1.20699 1.04760 1.01839 0.92232 1.20681 0.79221 0.84989 0.85301 1.90760 1.41657 1.25632 1.87125 1.45533 1.57621 1.28305 1.04181 1.21163 0.98730 0.96368 0.83258 1.22193 1.02089 0.95044 0.87958 1.61735 1.07548 1.55036 1.02623 1.22612 0.87892 0.98377 0.99102 1.20544 0.96276 0.93085 0.83986 1.44329 1.01847 1.78737 1.08859 1.19489 1.05521 1.13516 1.01223 0.91416 1.25982 1.02300 0.95465 1.00852 1.70167 1.26216 1.17429 1.44498 0.85289 0.78133 0.77313 0.79364 1.20241 1.22156 1.19853 1.21179 0.84072 0.96747 0.96506 1.22469 0.99850 0.95431 0.89235 0.92318 0.89110 0.87125 0.83086 0.82948 0.83480 0.83466 0.86111 0.74053 0.93249 0.92120 0.87479 0.93183 0.95736 0.90837 0.98678 0.93171 0.94102 0.96872 0.91849 0.87940 0.95206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 9.09 71.98 0.65 -1.04 16 2 C 0.07 1.15 2.64 29.85 0.08 1.23 16 3 H 0.13 1.27 6.39 -2.38 -0.02 1.25 16 4 O -0.32 -7.62 9.34 -73.46 -0.69 -8.30 16 5 C 0.11 2.08 6.58 22.51 0.15 2.23 16 6 C -0.21 -2.82 8.18 22.37 0.18 -2.63 16 7 C -0.08 -0.86 10.04 22.25 0.22 -0.63 16 8 C -0.16 -1.77 10.04 22.28 0.22 -1.55 16 9 C -0.08 -1.15 10.04 22.25 0.22 -0.93 16 10 C -0.18 -3.37 9.99 22.37 0.22 -3.15 16 11 C 0.51 12.13 7.18 87.66 0.63 12.76 16 12 O -0.57 -20.71 16.51 15.96 0.26 -20.44 16 13 N -0.70 -12.26 5.52 -463.08 -2.55 -14.81 16 14 C 0.13 3.13 5.61 86.38 0.48 3.61 16 15 C 0.06 1.19 5.08 86.30 0.44 1.63 16 16 N -0.54 -17.49 4.63 -895.23 -4.15 -21.63 16 17 C 0.05 1.91 5.46 86.38 0.47 2.38 16 18 C 0.19 9.46 5.36 86.35 0.46 9.92 16 19 N -0.61 -31.58 3.02 -698.12 -2.11 -33.69 16 20 C -0.27 -14.90 9.61 84.03 0.81 -14.10 16 21 H 0.07 3.63 7.86 -2.91 -0.02 3.60 16 22 C -0.05 -2.87 5.02 84.86 0.43 -2.44 16 23 N -0.94 -57.06 11.21 21.65 0.24 -56.82 16 24 Si 0.97 45.33 29.57 68.60 2.03 47.36 16 25 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 26 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 27 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 28 C 0.14 5.82 6.69 86.35 0.58 6.39 16 29 C 0.06 1.85 5.62 86.38 0.49 2.34 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.09 0.68 6.76 -2.39 -0.02 0.66 16 32 H 0.11 0.40 7.92 -2.38 -0.02 0.38 16 33 H 0.15 1.15 5.38 -2.91 -0.02 1.14 16 34 H 0.15 0.69 8.06 -2.91 -0.02 0.67 16 35 H 0.15 0.84 8.06 -2.91 -0.02 0.82 16 36 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 37 H 0.12 2.40 8.06 -2.92 -0.02 2.38 16 38 H 0.42 3.49 8.25 -92.71 -0.77 2.72 16 39 H 0.05 1.45 6.40 -2.39 -0.02 1.44 16 40 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.11 1.70 7.97 -2.38 -0.02 1.68 16 42 H 0.05 0.98 8.12 -2.39 -0.02 0.96 16 43 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 44 H 0.07 2.68 6.16 -2.39 -0.01 2.66 16 45 H 0.00 -0.27 8.14 -2.38 -0.02 -0.29 16 46 H 0.05 2.84 6.34 -2.39 -0.02 2.83 16 47 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 48 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 49 H 0.06 2.48 7.96 -2.38 -0.02 2.46 16 50 H 0.10 2.45 7.99 -2.38 -0.02 2.43 16 51 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -80.71 406.24 -0.06 -80.77 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 0.16 Total: 11.56 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: 6.74 Total: 16.01 kcal Atomic # 7 Polarization: -118.39 SS G_CDS: -8.56 Total: -126.95 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -0.42 Total: -28.75 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -80.71 -0.06 -80.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490514671.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.844 kcal (2) G-P(sol) polarization free energy of solvation -80.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds