Wall clock time and date at job start Wed Apr 1 2020 05:11:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.09006 * 109.47042 * 2 1
4 4 O 1.42898 * 109.46972 * 119.99719 * 2 1 3
5 5 C 1.35902 * 117.00017 * 276.64431 * 4 2 1
6 6 C 1.38735 * 120.05673 * 4.99624 * 5 4 2
7 7 C 1.38139 * 119.94378 * 179.74078 * 6 5 4
8 8 C 1.38265 * 120.05638 * 0.50812 * 7 6 5
9 9 C 1.38267 * 120.11259 * 359.76259 * 8 7 6
10 10 C 1.38146 * 120.05564 * 359.97438 * 9 8 7
11 11 C 1.50697 * 109.47142 * 240.00046 * 2 1 3
12 12 O 1.21281 * 119.99360 * 245.00054 * 11 2 1
13 13 N 1.34770 * 120.00263 * 65.00145 * 11 2 1
14 14 C 1.46500 * 119.99832 * 180.02562 * 13 11 2
15 15 C 1.53002 * 109.46950 * 180.02562 * 14 13 11
16 16 N 1.46899 * 109.47081 * 180.02562 * 15 14 13
17 17 C 1.46902 * 110.99987 * 294.29757 * 16 15 14
18 18 C 1.53240 * 109.34366 * 172.75061 * 17 16 15
19 19 N 1.47080 * 108.52248 * 53.82802 * 18 17 16
20 20 C 1.36931 * 120.88275 * 128.84312 * 19 18 17
21 21 H 1.08004 * 120.00226 * 211.31199 * 20 19 18
22 22 C 1.38811 * 120.00226 * 31.29824 * 20 19 18
23 23 N 1.31625 * 119.99647 * 12.23595 * 22 20 19
24 24 Si 1.86798 * 120.00325 * 192.23206 * 22 20 19
25 25 H 1.48497 * 109.47209 * 60.00564 * 24 22 20
26 26 H 1.48499 * 109.47088 * 180.02562 * 24 22 20
27 27 H 1.48499 * 109.47195 * 300.00049 * 24 22 20
28 28 C 1.47086 * 118.23394 * 308.81628 * 19 18 17
29 29 C 1.46905 * 111.00381 * 169.99866 * 16 15 14
30 30 H 1.08993 * 109.46793 * 180.02562 * 1 2 3
31 31 H 1.08999 * 109.47280 * 300.00424 * 1 2 3
32 32 H 1.09006 * 109.46508 * 60.00022 * 1 2 3
33 33 H 1.08000 * 120.02399 * 359.97438 * 6 5 4
34 34 H 1.08001 * 119.97241 * 180.23069 * 7 6 5
35 35 H 1.08005 * 119.94489 * 179.74277 * 8 7 6
36 36 H 1.08002 * 119.97537 * 179.97438 * 9 8 7
37 37 H 1.07990 * 120.02970 * 179.97438 * 10 9 8
38 38 H 0.96996 * 120.00002 * 359.97438 * 13 11 2
39 39 H 1.08997 * 109.47088 * 299.99327 * 14 13 11
40 40 H 1.08991 * 109.47610 * 59.99783 * 14 13 11
41 41 H 1.09009 * 109.46971 * 299.99414 * 15 14 13
42 42 H 1.08995 * 109.47727 * 59.99503 * 15 14 13
43 43 H 1.09009 * 109.49195 * 292.70887 * 17 16 15
44 44 H 1.08997 * 109.49485 * 52.78441 * 17 16 15
45 45 H 1.09006 * 109.62311 * 294.11996 * 18 17 16
46 46 H 1.09000 * 109.62792 * 173.54288 * 18 17 16
47 47 H 0.96997 * 119.99806 * 179.97438 * 23 22 20
48 48 H 1.08994 * 109.62723 * 291.47107 * 28 19 18
49 49 H 1.09005 * 109.78275 * 170.99142 * 28 19 18
50 50 H 1.09004 * 109.48906 * 307.21006 * 29 16 15
51 51 H 1.08995 * 109.49151 * 67.28604 * 29 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 8 2.0063 -0.6736 1.1668
5 6 2.0799 0.0539 2.3124
6 6 1.6051 1.3572 2.3396
7 6 1.6761 2.0927 3.5067
8 6 2.2294 1.5347 4.6443
9 6 2.7085 0.2379 4.6183
10 6 2.6348 -0.5037 3.4551
11 6 2.0324 -0.7104 -1.2304
12 8 2.6530 -1.7466 -1.1213
13 7 1.7920 -0.1942 -2.4519
14 6 2.2799 -0.8852 -3.6481
15 6 1.8759 -0.0946 -4.8942
16 7 2.3645 -0.7877 -6.0936
17 6 3.8329 -0.7945 -6.1362
18 6 4.3030 -1.6769 -7.2975
19 7 3.6472 -1.2150 -8.5304
20 6 4.3780 -0.9451 -9.6565
21 1 4.0486 -0.1794 -10.3434
22 6 5.5422 -1.6553 -9.9152
23 7 5.8195 -2.7394 -9.2221
24 14 6.7154 -1.0726 -11.2470
25 1 7.1943 0.2947 -10.9212
26 1 7.8743 -1.9979 -11.3252
27 1 6.0100 -1.0519 -12.5536
28 6 2.1855 -1.0514 -8.5217
29 6 1.7989 -0.1936 -7.3123
30 1 -0.3633 -1.0276 0.0005
31 1 -0.3634 0.5139 0.8899
32 1 -0.3632 0.5139 -0.8901
33 1 1.1768 1.7950 1.4500
34 1 1.3032 3.1060 3.5294
35 1 2.2878 2.1128 5.5547
36 1 3.1406 -0.1956 5.5081
37 1 3.0095 -1.5163 3.4352
38 1 1.2953 0.6344 -2.5392
39 1 3.3662 -0.9637 -3.6046
40 1 1.8450 -1.8835 -3.6939
41 1 0.7895 -0.0156 -4.9379
42 1 2.3111 0.9036 -4.8482
43 1 4.1973 0.2226 -6.2816
44 1 4.2222 -1.1901 -5.1981
45 1 4.0291 -2.7139 -7.1035
46 1 5.3845 -1.5948 -7.4052
47 1 6.6329 -3.2358 -9.4031
48 1 1.7082 -2.0283 -8.4454
49 1 1.8641 -0.5575 -9.4387
50 1 0.7129 -0.1535 -7.2271
51 1 2.1915 0.8150 -7.4412
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001490514671.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:11:29
Heat of formation + Delta-G solvation = -31.924868 kcal
Electronic energy + Delta-G solvation = -29717.685759 eV
Core-core repulsion = 25617.454613 eV
Total energy + Delta-G solvation = -4100.231146 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-41.70933 -40.50140 -39.70093 -38.29704 -36.85334 -35.53704 -33.63974 -32.99571
-31.75195 -31.66351 -30.65958 -30.08482 -27.69313 -25.79793 -24.91226 -24.27201
-23.74772 -23.14952 -22.56277 -21.39995 -20.81968 -19.43195 -18.74309 -18.45478
-17.51206 -17.03034 -16.97721 -16.70100 -16.40276 -16.30612 -15.93189 -15.61302
-15.54750 -15.31855 -15.15668 -15.07007 -14.89319 -14.51449 -14.39681 -14.15851
-14.10216 -13.60078 -13.30320 -13.20822 -12.96171 -12.88334 -12.82460 -12.64287
-12.57473 -12.44255 -12.29082 -12.08955 -12.03520 -11.87950 -11.75071 -11.56902
-11.43512 -10.95727 -10.60099 -10.22572 -9.94319 -9.29795 -9.19319 -8.62678
-7.88030 -5.39095 0.39488 0.47538 1.41288 1.45869 1.47644 1.48326
1.55148 2.46601 2.50241 2.84867 3.06008 3.28505 3.50554 3.67892
3.69448 3.82702 3.86274 3.93911 4.00502 4.06820 4.29385 4.29763
4.34986 4.40828 4.45606 4.51889 4.54584 4.62325 4.64489 4.66115
4.71819 4.76649 4.81647 4.91616 4.98653 5.04522 5.08456 5.11872
5.20307 5.26529 5.35313 5.36147 5.48466 5.60945 5.61444 5.66559
5.83945 6.13490 6.22837 6.32195 6.38816 6.48593 7.09976 7.13312
7.82701 8.39195 9.18427
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.023031 B = 0.001625 C = 0.001577
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1215.453517 B =17229.206005 C =17749.769462
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C 0.070 3.930
3 H 0.127 0.873
4 O -0.319 6.319
5 C 0.106 3.894
6 C -0.215 4.215
7 C -0.082 4.082
8 C -0.163 4.163
9 C -0.084 4.084
10 C -0.177 4.177
11 C 0.512 3.488
12 O -0.574 6.574
13 N -0.702 5.702
14 C 0.129 3.871
15 C 0.055 3.945
16 N -0.544 5.544
17 C 0.049 3.951
18 C 0.187 3.813
19 N -0.613 5.613
20 C -0.267 4.267
21 H 0.068 0.932
22 C -0.050 4.050
23 N -0.938 5.938
24 Si 0.971 3.029
25 H -0.277 1.277
26 H -0.295 1.295
27 H -0.273 1.273
28 C 0.140 3.860
29 C 0.059 3.941
30 H 0.058 0.942
31 H 0.090 0.910
32 H 0.110 0.890
33 H 0.152 0.848
34 H 0.153 0.847
35 H 0.147 0.853
36 H 0.148 0.852
37 H 0.121 0.879
38 H 0.421 0.579
39 H 0.049 0.951
40 H 0.060 0.940
41 H 0.107 0.893
42 H 0.050 0.950
43 H 0.024 0.976
44 H 0.073 0.927
45 H -0.005 1.005
46 H 0.050 0.950
47 H 0.250 0.750
48 H 0.013 0.987
49 H 0.063 0.937
50 H 0.102 0.898
51 H 0.030 0.970
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.667 15.195 26.493 33.880
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.228 4.228
2 C 0.011 3.989
3 H 0.144 0.856
4 O -0.233 6.233
5 C 0.061 3.939
6 C -0.233 4.233
7 C -0.100 4.100
8 C -0.181 4.181
9 C -0.102 4.102
10 C -0.195 4.195
11 C 0.298 3.702
12 O -0.452 6.452
13 N -0.356 5.356
14 C 0.005 3.995
15 C -0.073 4.073
16 N -0.269 5.269
17 C -0.080 4.080
18 C 0.061 3.939
19 N -0.338 5.338
20 C -0.397 4.397
21 H 0.086 0.914
22 C -0.246 4.246
23 N -0.583 5.583
24 Si 0.799 3.201
25 H -0.202 1.202
26 H -0.222 1.222
27 H -0.199 1.199
28 C 0.015 3.985
29 C -0.070 4.070
30 H 0.077 0.923
31 H 0.109 0.891
32 H 0.129 0.871
33 H 0.169 0.831
34 H 0.171 0.829
35 H 0.165 0.835
36 H 0.165 0.835
37 H 0.139 0.861
38 H 0.259 0.741
39 H 0.068 0.932
40 H 0.079 0.921
41 H 0.125 0.875
42 H 0.068 0.932
43 H 0.043 0.957
44 H 0.092 0.908
45 H 0.013 0.987
46 H 0.068 0.932
47 H 0.059 0.941
48 H 0.031 0.969
49 H 0.082 0.918
50 H 0.121 0.879
51 H 0.048 0.952
Dipole moment (debyes) X Y Z Total
from point charges -14.210 13.665 26.496 33.026
hybrid contribution 1.205 0.579 -1.064 1.708
sum -13.005 14.243 25.433 31.919
Atomic orbital electron populations
1.22373 0.90171 1.04183 1.06052 1.22337 0.97356 0.97226 0.81977
0.85581 1.86181 1.81611 1.39196 1.16284 1.19354 0.96786 0.91611
0.86109 1.21576 1.06704 0.93528 1.01504 1.21363 0.96468 1.00514
0.91685 1.21471 1.01013 0.95735 0.99873 1.21275 0.97457 0.94498
0.96988 1.20699 1.04760 1.01839 0.92232 1.20681 0.79221 0.84989
0.85301 1.90760 1.41657 1.25632 1.87125 1.45533 1.57621 1.28305
1.04181 1.21163 0.98730 0.96368 0.83258 1.22193 1.02089 0.95044
0.87958 1.61735 1.07548 1.55036 1.02623 1.22612 0.87892 0.98377
0.99102 1.20544 0.96276 0.93085 0.83986 1.44329 1.01847 1.78737
1.08859 1.19489 1.05521 1.13516 1.01223 0.91416 1.25982 1.02300
0.95465 1.00852 1.70167 1.26216 1.17429 1.44498 0.85289 0.78133
0.77313 0.79364 1.20241 1.22156 1.19853 1.21179 0.84072 0.96747
0.96506 1.22469 0.99850 0.95431 0.89235 0.92318 0.89110 0.87125
0.83086 0.82948 0.83480 0.83466 0.86111 0.74053 0.93249 0.92120
0.87479 0.93183 0.95736 0.90837 0.98678 0.93171 0.94102 0.96872
0.91849 0.87940 0.95206
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.70 9.09 71.98 0.65 -1.04 16
2 C 0.07 1.15 2.64 29.85 0.08 1.23 16
3 H 0.13 1.27 6.39 -2.38 -0.02 1.25 16
4 O -0.32 -7.62 9.34 -73.46 -0.69 -8.30 16
5 C 0.11 2.08 6.58 22.51 0.15 2.23 16
6 C -0.21 -2.82 8.18 22.37 0.18 -2.63 16
7 C -0.08 -0.86 10.04 22.25 0.22 -0.63 16
8 C -0.16 -1.77 10.04 22.28 0.22 -1.55 16
9 C -0.08 -1.15 10.04 22.25 0.22 -0.93 16
10 C -0.18 -3.37 9.99 22.37 0.22 -3.15 16
11 C 0.51 12.13 7.18 87.66 0.63 12.76 16
12 O -0.57 -20.71 16.51 15.96 0.26 -20.44 16
13 N -0.70 -12.26 5.52 -463.08 -2.55 -14.81 16
14 C 0.13 3.13 5.61 86.38 0.48 3.61 16
15 C 0.06 1.19 5.08 86.30 0.44 1.63 16
16 N -0.54 -17.49 4.63 -895.23 -4.15 -21.63 16
17 C 0.05 1.91 5.46 86.38 0.47 2.38 16
18 C 0.19 9.46 5.36 86.35 0.46 9.92 16
19 N -0.61 -31.58 3.02 -698.12 -2.11 -33.69 16
20 C -0.27 -14.90 9.61 84.03 0.81 -14.10 16
21 H 0.07 3.63 7.86 -2.91 -0.02 3.60 16
22 C -0.05 -2.87 5.02 84.86 0.43 -2.44 16
23 N -0.94 -57.06 11.21 21.65 0.24 -56.82 16
24 Si 0.97 45.33 29.57 68.60 2.03 47.36 16
25 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16
26 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16
27 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16
28 C 0.14 5.82 6.69 86.35 0.58 6.39 16
29 C 0.06 1.85 5.62 86.38 0.49 2.34 16
30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16
31 H 0.09 0.68 6.76 -2.39 -0.02 0.66 16
32 H 0.11 0.40 7.92 -2.38 -0.02 0.38 16
33 H 0.15 1.15 5.38 -2.91 -0.02 1.14 16
34 H 0.15 0.69 8.06 -2.91 -0.02 0.67 16
35 H 0.15 0.84 8.06 -2.91 -0.02 0.82 16
36 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16
37 H 0.12 2.40 8.06 -2.92 -0.02 2.38 16
38 H 0.42 3.49 8.25 -92.71 -0.77 2.72 16
39 H 0.05 1.45 6.40 -2.39 -0.02 1.44 16
40 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16
41 H 0.11 1.70 7.97 -2.38 -0.02 1.68 16
42 H 0.05 0.98 8.12 -2.39 -0.02 0.96 16
43 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16
44 H 0.07 2.68 6.16 -2.39 -0.01 2.66 16
45 H 0.00 -0.27 8.14 -2.38 -0.02 -0.29 16
46 H 0.05 2.84 6.34 -2.39 -0.02 2.83 16
47 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16
48 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16
49 H 0.06 2.48 7.96 -2.38 -0.02 2.46 16
50 H 0.10 2.45 7.99 -2.38 -0.02 2.43 16
51 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16
Total: -1.00 -80.71 406.24 -0.06 -80.77
By element:
Atomic # 1 Polarization: 11.39 SS G_CDS: 0.16 Total: 11.56 kcal
Atomic # 6 Polarization: 9.27 SS G_CDS: 6.74 Total: 16.01 kcal
Atomic # 7 Polarization: -118.39 SS G_CDS: -8.56 Total: -126.95 kcal
Atomic # 8 Polarization: -28.32 SS G_CDS: -0.42 Total: -28.75 kcal
Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal
Total: -80.71 -0.06 -80.77 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001490514671.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 48.844 kcal
(2) G-P(sol) polarization free energy of solvation -80.714 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.869 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.056 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.769 kcal
(6) G-S(sol) free energy of system = (1) + (5) -31.925 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds