Wall clock time and date at job start Wed Apr 1 2020 05:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.47118 * 2 1 4 4 O 1.42904 * 109.47303 * 120.00200 * 2 1 3 5 5 C 1.35674 * 116.99656 * 269.99828 * 4 2 1 6 6 C 1.38920 * 119.68231 * 180.02562 * 5 4 2 7 7 C 1.38375 * 119.11395 * 179.97438 * 6 5 4 8 8 C 1.38828 * 118.48392 * 359.97438 * 7 6 5 9 9 C 1.38052 * 119.29051 * 0.02562 * 8 7 6 10 10 N 1.31962 * 120.83323 * 359.73712 * 9 8 7 11 11 C 1.50700 * 109.46790 * 240.00156 * 2 1 3 12 12 O 1.21280 * 120.00198 * 244.99574 * 11 2 1 13 13 N 1.34777 * 120.00126 * 65.27364 * 11 2 1 14 14 C 1.46497 * 120.00117 * 179.72067 * 13 11 2 15 15 C 1.52998 * 109.47254 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47494 * 180.02562 * 15 14 13 17 17 C 1.52998 * 109.47437 * 174.92552 * 16 15 14 18 18 H 1.08998 * 109.87308 * 304.34523 * 17 16 15 19 19 C 1.54321 * 109.87934 * 65.36218 * 17 16 15 20 20 C 1.55160 * 102.94108 * 141.60991 * 19 17 16 21 21 C 1.54911 * 101.58274 * 324.49601 * 20 19 17 22 22 N 1.47020 * 109.88215 * 183.32919 * 17 16 15 23 23 C 1.36937 * 125.65110 * 61.60730 * 22 17 16 24 24 H 1.08007 * 119.99442 * 14.16373 * 23 22 17 25 25 C 1.38804 * 120.00662 * 194.15823 * 23 22 17 26 26 N 1.31628 * 119.99427 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00489 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.46847 * 90.00183 * 27 25 23 29 29 H 1.48498 * 109.47464 * 209.99882 * 27 25 23 30 30 H 1.48498 * 109.46980 * 330.00128 * 27 25 23 31 31 H 1.08993 * 109.47179 * 59.99662 * 1 2 3 32 32 H 1.09002 * 109.46718 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46594 * 299.99588 * 1 2 3 34 34 H 1.08004 * 120.44236 * 0.02562 * 6 5 4 35 35 H 1.08002 * 120.76083 * 180.02562 * 7 6 5 36 36 H 1.08001 * 120.35807 * 180.02562 * 8 7 6 37 37 H 1.08000 * 119.58306 * 180.02562 * 9 8 7 38 38 H 0.96998 * 119.99892 * 359.72589 * 13 11 2 39 39 H 1.09001 * 109.47300 * 300.00613 * 14 13 11 40 40 H 1.09005 * 109.46787 * 60.00412 * 14 13 11 41 41 H 1.09001 * 109.47426 * 300.00484 * 15 14 13 42 42 H 1.08997 * 109.47138 * 60.00231 * 15 14 13 43 43 H 1.08998 * 109.46661 * 294.92761 * 16 15 14 44 44 H 1.09000 * 109.47328 * 54.92113 * 16 15 14 45 45 H 1.09001 * 110.72391 * 259.97033 * 19 17 16 46 46 H 1.09000 * 110.72240 * 23.24982 * 19 17 16 47 47 H 1.09006 * 111.00476 * 82.57310 * 20 19 17 48 48 H 1.09004 * 111.00395 * 206.38034 * 20 19 17 49 49 H 1.09004 * 110.36388 * 155.84299 * 21 20 19 50 50 H 1.08991 * 110.36706 * 278.16883 * 21 20 19 51 51 H 0.97000 * 119.99293 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0065 -0.6737 1.1668 5 6 2.2118 0.0829 2.2741 6 6 2.6749 -0.5148 3.4395 7 6 2.8808 0.2680 4.5618 8 6 2.6153 1.6281 4.4781 9 6 2.1569 2.1547 3.2871 10 7 1.9746 1.3833 2.2321 11 6 2.0323 -0.7104 -1.2305 12 8 2.6530 -1.7466 -1.1216 13 7 1.7966 -0.1913 -2.4518 14 6 2.2902 -0.8787 -3.6476 15 6 1.8907 -0.0853 -4.8933 16 6 2.4055 -0.8035 -6.1423 17 6 1.8992 -0.0801 -7.3918 18 1 0.8119 -0.0095 -7.3641 19 6 2.5153 1.3329 -7.4659 20 6 2.7899 1.5131 -8.9824 21 6 3.1933 0.0765 -9.3983 22 7 2.3224 -0.8080 -8.5970 23 6 1.9691 -2.0911 -8.9197 24 1 1.1571 -2.5751 -8.3973 25 6 2.6542 -2.7695 -9.9182 26 7 3.6440 -2.1796 -10.5546 27 14 2.1726 -4.5199 -10.3580 28 1 1.1411 -4.4960 -11.4261 29 1 3.3684 -5.2559 -10.8411 30 1 1.6253 -5.1994 -9.1563 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3632 0.5138 0.8901 34 1 2.8725 -1.5763 3.4689 35 1 3.2406 -0.1689 5.4816 36 1 2.7657 2.2674 5.3354 37 1 1.9492 3.2122 3.2166 38 1 1.3003 0.6375 -2.5389 39 1 3.3763 -0.9566 -3.5997 40 1 1.8561 -1.8773 -3.6978 41 1 0.8045 -0.0070 -4.9414 42 1 2.3250 0.9131 -4.8430 43 1 3.4955 -0.8026 -6.1385 44 1 2.0431 -1.8315 -6.1457 45 1 1.8072 2.0815 -7.1106 46 1 3.4443 1.3789 -6.8977 47 1 1.8898 1.8336 -9.5070 48 1 3.6079 2.2136 -9.1507 49 1 3.0105 -0.0758 -10.4621 50 1 4.2416 -0.1064 -9.1626 51 1 4.1230 -2.6538 -11.2521 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492175280.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:20 Heat of formation + Delta-G solvation = -22.429830 kcal Electronic energy + Delta-G solvation = -29490.688993 eV Core-core repulsion = 25390.869583 eV Total energy + Delta-G solvation = -4099.819410 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.15418 -39.90296 -38.14331 -37.74194 -35.50330 -33.29958 -32.90660 -32.50191 -31.83438 -30.39089 -29.36474 -28.02635 -25.47926 -24.74086 -24.19093 -23.80862 -22.91828 -21.54729 -20.52746 -20.09671 -19.12475 -18.91578 -17.84466 -16.77391 -16.71414 -16.34551 -16.12984 -15.91875 -15.48331 -15.04988 -14.94592 -14.67521 -14.31132 -14.10125 -13.81944 -13.70228 -13.56005 -13.45825 -12.86070 -12.70695 -12.40035 -12.31658 -12.15505 -12.03443 -11.90443 -11.69927 -11.48940 -11.43843 -11.01595 -10.78909 -10.71881 -10.54594 -10.38462 -10.08348 -10.05204 -9.97983 -9.89251 -9.74571 -9.59765 -9.57152 -9.16910 -8.91441 -8.54579 -6.74107 -5.70938 -3.05723 0.72946 0.83494 2.25097 2.42683 3.26335 3.36816 3.41584 3.47411 3.48928 3.83537 4.37947 4.43238 4.51980 4.54699 4.61284 4.66795 4.78293 4.80101 5.01083 5.18108 5.20529 5.28912 5.31703 5.38255 5.46966 5.52457 5.62196 5.62891 5.69414 5.74580 5.76522 5.87101 5.97136 5.98398 6.03669 6.12054 6.28007 6.35622 6.36902 6.44719 6.58987 6.72193 6.74667 6.82052 6.98111 7.19683 7.30796 7.41633 7.57979 7.66134 7.83623 8.03719 8.32823 9.23812 9.85687 10.55300 11.41532 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019437 B = 0.001673 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.214948 B =16736.677001 C =17622.863365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.073 3.927 3 H 0.114 0.886 4 O -0.276 6.276 5 C 0.324 3.676 6 C -0.188 4.188 7 C -0.040 4.040 8 C -0.215 4.215 9 C 0.140 3.860 10 N -0.543 5.543 11 C 0.512 3.488 12 O -0.520 6.520 13 N -0.722 5.722 14 C 0.119 3.881 15 C -0.127 4.127 16 C -0.122 4.122 17 C 0.162 3.838 18 H 0.030 0.970 19 C -0.124 4.124 20 C -0.150 4.150 21 C 0.172 3.828 22 N -0.597 5.597 23 C -0.225 4.225 24 H 0.074 0.926 25 C -0.006 4.006 26 N -0.918 5.918 27 Si 0.908 3.092 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.281 1.281 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.137 0.863 37 H 0.160 0.840 38 H 0.400 0.600 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.065 0.935 45 H 0.055 0.945 46 H 0.061 0.939 47 H 0.056 0.944 48 H 0.056 0.944 49 H 0.070 0.930 50 H 0.023 0.977 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.740 12.203 28.420 31.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.013 3.987 3 H 0.132 0.868 4 O -0.181 6.181 5 C 0.145 3.855 6 C -0.209 4.209 7 C -0.065 4.065 8 C -0.235 4.235 9 C -0.016 4.016 10 N -0.267 5.267 11 C 0.296 3.704 12 O -0.395 6.395 13 N -0.376 5.376 14 C -0.004 4.004 15 C -0.165 4.165 16 C -0.162 4.162 17 C 0.055 3.945 18 H 0.048 0.952 19 C -0.162 4.162 20 C -0.189 4.189 21 C 0.047 3.953 22 N -0.321 5.321 23 C -0.354 4.354 24 H 0.092 0.908 25 C -0.203 4.203 26 N -0.565 5.565 27 Si 0.739 3.261 28 H -0.217 1.217 29 H -0.217 1.217 30 H -0.206 1.206 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.161 0.839 35 H 0.159 0.841 36 H 0.155 0.845 37 H 0.177 0.823 38 H 0.235 0.765 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.074 0.926 46 H 0.079 0.921 47 H 0.075 0.925 48 H 0.074 0.926 49 H 0.088 0.912 50 H 0.041 0.959 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.463 11.309 27.470 30.040 hybrid contribution -0.121 -0.745 0.440 0.874 sum -4.584 10.564 27.910 30.193 Atomic orbital electron populations 1.22161 0.92267 1.03820 1.03843 1.22102 0.95853 0.97968 0.82808 0.86832 1.86402 1.79767 1.34350 1.17606 1.19913 0.91121 0.87390 0.87060 1.21125 1.05960 1.02397 0.91404 1.21442 0.93982 0.93442 0.97675 1.21999 1.05243 0.96240 1.00046 1.22433 0.92597 0.99228 0.87296 1.67256 1.22079 1.04713 1.32690 1.20198 0.80280 0.85622 0.84327 1.90757 1.39339 1.23011 1.86420 1.45970 1.58021 1.27966 1.05618 1.21557 0.99729 0.96503 0.82577 1.21840 1.01390 0.99442 0.93852 1.22033 1.00926 1.00258 0.93028 1.20918 0.96028 0.90365 0.87211 0.95190 1.22590 0.99831 0.96633 0.97161 1.23010 1.00124 1.00217 0.95552 1.21465 0.93015 0.83823 0.96971 1.44616 1.57051 1.11953 1.18449 1.18961 1.11703 0.88011 1.16692 0.90797 1.24889 0.97325 0.98151 0.99919 1.69941 1.23659 1.36297 1.26639 0.86176 0.77225 0.84521 0.78207 1.21655 1.21694 1.20626 0.90179 0.91110 0.90808 0.83872 0.84062 0.84494 0.82278 0.76534 0.91319 0.91180 0.91667 0.91631 0.92181 0.91650 0.92646 0.92052 0.92503 0.92572 0.91216 0.95851 0.93765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 9.49 37.16 0.35 -0.96 16 2 C 0.07 0.76 2.90 -27.88 -0.08 0.68 16 3 H 0.11 1.07 6.98 -51.93 -0.36 0.71 16 4 O -0.28 -3.43 9.30 -38.58 -0.36 -3.79 16 5 C 0.32 3.43 7.45 -17.12 -0.13 3.30 16 6 C -0.19 -1.60 10.04 -39.28 -0.39 -2.00 16 7 C -0.04 -0.24 10.17 -39.31 -0.40 -0.64 16 8 C -0.21 -1.17 10.11 -39.43 -0.40 -1.57 16 9 C 0.14 0.93 11.18 -17.56 -0.20 0.74 16 10 N -0.54 -5.12 8.64 -13.33 -0.12 -5.23 16 11 C 0.51 6.71 7.18 -10.98 -0.08 6.63 16 12 O -0.52 -9.27 16.51 -14.30 -0.24 -9.50 16 13 N -0.72 -7.84 5.52 -60.29 -0.33 -8.17 16 14 C 0.12 1.55 5.67 -4.04 -0.02 1.53 16 15 C -0.13 -1.61 5.07 -26.73 -0.14 -1.75 16 16 C -0.12 -2.15 4.69 -26.73 -0.13 -2.27 16 17 C 0.16 3.21 3.18 -66.96 -0.21 2.99 16 18 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 19 C -0.12 -2.09 5.61 -24.90 -0.14 -2.23 16 20 C -0.15 -2.82 7.08 -24.58 -0.17 -2.99 16 21 C 0.17 4.17 5.44 -2.35 -0.01 4.16 16 22 N -0.60 -14.95 3.14 -162.32 -0.51 -15.46 16 23 C -0.23 -6.20 9.75 -15.06 -0.15 -6.35 16 24 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 25 C -0.01 -0.17 5.47 -17.43 -0.10 -0.27 16 26 N -0.92 -27.06 10.58 55.49 0.59 -26.48 16 27 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 29 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 30 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 31 H 0.08 0.48 7.94 -51.93 -0.41 0.07 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 35 H 0.14 0.45 8.06 -52.49 -0.42 0.02 16 36 H 0.14 0.38 8.06 -52.49 -0.42 -0.05 16 37 H 0.16 0.60 8.06 -52.49 -0.42 0.18 16 38 H 0.40 3.04 8.27 -40.82 -0.34 2.70 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.75 7.57 -51.93 -0.39 0.36 16 43 H 0.06 1.13 8.07 -51.93 -0.42 0.72 16 44 H 0.06 1.27 7.89 -51.93 -0.41 0.86 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.06 0.99 7.79 -51.93 -0.40 0.59 16 47 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 49 H 0.07 1.89 6.90 -51.93 -0.36 1.53 16 50 H 0.02 0.61 8.08 -51.93 -0.42 0.20 16 51 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 416.18 15.07 6.27 6.27 Total: -1.00 -34.73 416.18 -10.67 -45.40 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -8.56 Total: 0.73 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -2.39 Total: -1.00 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: -0.37 Total: -55.34 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -0.59 Total: -13.30 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -34.73 -10.67 -45.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492175280.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.967 kcal (2) G-P(sol) polarization free energy of solvation -34.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds