Wall clock time and date at job start Wed Apr 1 2020 05:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.47118 * 2 1 4 4 O 1.42904 * 109.47303 * 120.00200 * 2 1 3 5 5 C 1.35674 * 116.99656 * 269.99828 * 4 2 1 6 6 C 1.38920 * 119.68231 * 180.02562 * 5 4 2 7 7 C 1.38375 * 119.11395 * 179.97438 * 6 5 4 8 8 C 1.38828 * 118.48392 * 359.97438 * 7 6 5 9 9 C 1.38052 * 119.29051 * 0.02562 * 8 7 6 10 10 N 1.31962 * 120.83323 * 359.73712 * 9 8 7 11 11 C 1.50700 * 109.46790 * 240.00156 * 2 1 3 12 12 O 1.21280 * 120.00198 * 244.99574 * 11 2 1 13 13 N 1.34777 * 120.00126 * 65.27364 * 11 2 1 14 14 C 1.46497 * 120.00117 * 179.72067 * 13 11 2 15 15 C 1.52998 * 109.47254 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47494 * 180.02562 * 15 14 13 17 17 C 1.52998 * 109.47437 * 174.92552 * 16 15 14 18 18 H 1.08998 * 109.87308 * 304.34523 * 17 16 15 19 19 C 1.54321 * 109.87934 * 65.36218 * 17 16 15 20 20 C 1.55160 * 102.94108 * 141.60991 * 19 17 16 21 21 C 1.54911 * 101.58274 * 324.49601 * 20 19 17 22 22 N 1.47020 * 109.88215 * 183.32919 * 17 16 15 23 23 C 1.36937 * 125.65110 * 61.60730 * 22 17 16 24 24 H 1.08007 * 119.99442 * 14.16373 * 23 22 17 25 25 C 1.38804 * 120.00662 * 194.15823 * 23 22 17 26 26 N 1.31628 * 119.99427 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00489 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.46847 * 90.00183 * 27 25 23 29 29 H 1.48498 * 109.47464 * 209.99882 * 27 25 23 30 30 H 1.48498 * 109.46980 * 330.00128 * 27 25 23 31 31 H 1.08993 * 109.47179 * 59.99662 * 1 2 3 32 32 H 1.09002 * 109.46718 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46594 * 299.99588 * 1 2 3 34 34 H 1.08004 * 120.44236 * 0.02562 * 6 5 4 35 35 H 1.08002 * 120.76083 * 180.02562 * 7 6 5 36 36 H 1.08001 * 120.35807 * 180.02562 * 8 7 6 37 37 H 1.08000 * 119.58306 * 180.02562 * 9 8 7 38 38 H 0.96998 * 119.99892 * 359.72589 * 13 11 2 39 39 H 1.09001 * 109.47300 * 300.00613 * 14 13 11 40 40 H 1.09005 * 109.46787 * 60.00412 * 14 13 11 41 41 H 1.09001 * 109.47426 * 300.00484 * 15 14 13 42 42 H 1.08997 * 109.47138 * 60.00231 * 15 14 13 43 43 H 1.08998 * 109.46661 * 294.92761 * 16 15 14 44 44 H 1.09000 * 109.47328 * 54.92113 * 16 15 14 45 45 H 1.09001 * 110.72391 * 259.97033 * 19 17 16 46 46 H 1.09000 * 110.72240 * 23.24982 * 19 17 16 47 47 H 1.09006 * 111.00476 * 82.57310 * 20 19 17 48 48 H 1.09004 * 111.00395 * 206.38034 * 20 19 17 49 49 H 1.09004 * 110.36388 * 155.84299 * 21 20 19 50 50 H 1.08991 * 110.36706 * 278.16883 * 21 20 19 51 51 H 0.97000 * 119.99293 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0065 -0.6737 1.1668 5 6 2.2118 0.0829 2.2741 6 6 2.6749 -0.5148 3.4395 7 6 2.8808 0.2680 4.5618 8 6 2.6153 1.6281 4.4781 9 6 2.1569 2.1547 3.2871 10 7 1.9746 1.3833 2.2321 11 6 2.0323 -0.7104 -1.2305 12 8 2.6530 -1.7466 -1.1216 13 7 1.7966 -0.1913 -2.4518 14 6 2.2902 -0.8787 -3.6476 15 6 1.8907 -0.0853 -4.8933 16 6 2.4055 -0.8035 -6.1423 17 6 1.8992 -0.0801 -7.3918 18 1 0.8119 -0.0095 -7.3641 19 6 2.5153 1.3329 -7.4659 20 6 2.7899 1.5131 -8.9824 21 6 3.1933 0.0765 -9.3983 22 7 2.3224 -0.8080 -8.5970 23 6 1.9691 -2.0911 -8.9197 24 1 1.1571 -2.5751 -8.3973 25 6 2.6542 -2.7695 -9.9182 26 7 3.6440 -2.1796 -10.5546 27 14 2.1726 -4.5199 -10.3580 28 1 1.1411 -4.4960 -11.4261 29 1 3.3684 -5.2559 -10.8411 30 1 1.6253 -5.1994 -9.1563 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3632 0.5138 0.8901 34 1 2.8725 -1.5763 3.4689 35 1 3.2406 -0.1689 5.4816 36 1 2.7657 2.2674 5.3354 37 1 1.9492 3.2122 3.2166 38 1 1.3003 0.6375 -2.5389 39 1 3.3763 -0.9566 -3.5997 40 1 1.8561 -1.8773 -3.6978 41 1 0.8045 -0.0070 -4.9414 42 1 2.3250 0.9131 -4.8430 43 1 3.4955 -0.8026 -6.1385 44 1 2.0431 -1.8315 -6.1457 45 1 1.8072 2.0815 -7.1106 46 1 3.4443 1.3789 -6.8977 47 1 1.8898 1.8336 -9.5070 48 1 3.6079 2.2136 -9.1507 49 1 3.0105 -0.0758 -10.4621 50 1 4.2416 -0.1064 -9.1626 51 1 4.1230 -2.6538 -11.2521 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001492175280.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:18 Heat of formation + Delta-G solvation = -45.437244 kcal Electronic energy + Delta-G solvation = -29491.686669 eV Core-core repulsion = 25390.869583 eV Total energy + Delta-G solvation = -4100.817087 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.84505 -40.80740 -39.47524 -38.79640 -36.71716 -34.76159 -34.01960 -33.44031 -32.85749 -31.24718 -30.97296 -29.41594 -26.72930 -26.23460 -25.33115 -24.48167 -23.71603 -22.73224 -21.85649 -21.52970 -20.68200 -19.59958 -18.80013 -18.56172 -17.50853 -17.12537 -16.94509 -16.86664 -16.75622 -16.41708 -16.09746 -15.69101 -15.64037 -15.43269 -15.04371 -14.51694 -14.44264 -14.16856 -14.00127 -13.86365 -13.69865 -13.57072 -13.40943 -13.12123 -13.01714 -12.93422 -12.79362 -12.74670 -12.64245 -12.26714 -12.20559 -12.01110 -11.83443 -11.66398 -11.53363 -11.30104 -11.15702 -10.95745 -10.86883 -10.64980 -10.59795 -10.22558 -9.50302 -8.77232 -7.85146 -5.20308 0.19969 0.31788 1.40645 1.43498 1.45007 1.46422 1.53545 2.43462 2.50100 2.82429 3.27653 3.33339 3.52763 3.70914 3.84859 3.94310 3.96568 4.01544 4.05591 4.12122 4.16873 4.22851 4.26163 4.35873 4.37446 4.43271 4.62387 4.65131 4.67645 4.77899 4.80739 4.83284 4.85568 4.99458 5.04574 5.06303 5.08378 5.14156 5.24658 5.29622 5.29945 5.36653 5.51160 5.52300 5.53659 5.68873 5.72023 5.80584 6.15996 6.28159 6.43502 6.84522 7.09331 7.13018 7.82974 8.50577 9.26501 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019437 B = 0.001673 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.214948 B =16736.677001 C =17622.863365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.079 3.921 3 H 0.126 0.874 4 O -0.306 6.306 5 C 0.293 3.707 6 C -0.208 4.208 7 C -0.037 4.037 8 C -0.205 4.205 9 C 0.128 3.872 10 N -0.558 5.558 11 C 0.509 3.491 12 O -0.576 6.576 13 N -0.703 5.703 14 C 0.125 3.875 15 C -0.107 4.107 16 C -0.113 4.113 17 C 0.152 3.848 18 H 0.037 0.963 19 C -0.111 4.111 20 C -0.137 4.137 21 C 0.173 3.827 22 N -0.620 5.620 23 C -0.229 4.229 24 H 0.076 0.924 25 C -0.067 4.067 26 N -0.950 5.950 27 Si 0.970 3.030 28 H -0.285 1.285 29 H -0.297 1.297 30 H -0.271 1.271 31 H 0.106 0.894 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.140 0.860 35 H 0.171 0.829 36 H 0.171 0.829 37 H 0.189 0.811 38 H 0.421 0.579 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.039 0.961 44 H 0.036 0.964 45 H 0.099 0.901 46 H 0.070 0.930 47 H 0.064 0.936 48 H 0.080 0.920 49 H 0.030 0.970 50 H -0.010 1.010 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.259 15.235 31.163 35.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.019 3.981 3 H 0.144 0.856 4 O -0.214 6.214 5 C 0.115 3.885 6 C -0.229 4.229 7 C -0.063 4.063 8 C -0.224 4.224 9 C -0.027 4.027 10 N -0.282 5.282 11 C 0.295 3.705 12 O -0.455 6.455 13 N -0.357 5.357 14 C 0.001 3.999 15 C -0.145 4.145 16 C -0.154 4.154 17 C 0.046 3.954 18 H 0.055 0.945 19 C -0.149 4.149 20 C -0.176 4.176 21 C 0.048 3.952 22 N -0.344 5.344 23 C -0.358 4.358 24 H 0.094 0.906 25 C -0.260 4.260 26 N -0.599 5.599 27 Si 0.799 3.201 28 H -0.212 1.212 29 H -0.223 1.223 30 H -0.196 1.196 31 H 0.124 0.876 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.158 0.842 35 H 0.189 0.811 36 H 0.189 0.811 37 H 0.206 0.794 38 H 0.259 0.741 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.104 0.896 42 H 0.111 0.889 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.117 0.883 46 H 0.089 0.911 47 H 0.083 0.917 48 H 0.099 0.901 49 H 0.048 0.952 50 H 0.008 0.992 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -6.031 14.405 30.245 34.038 hybrid contribution 0.354 -1.617 -0.307 1.683 sum -5.677 12.788 29.937 33.046 Atomic orbital electron populations 1.22147 0.90350 1.03440 1.05351 1.22125 0.97096 0.97597 0.81250 0.85612 1.86353 1.80624 1.35814 1.18561 1.20151 0.93154 0.88142 0.87044 1.21347 1.06721 1.02831 0.91960 1.21852 0.92915 0.93743 0.97766 1.22423 1.03119 0.96284 1.00601 1.23057 0.92143 1.00345 0.87155 1.67221 1.22604 1.04322 1.34057 1.20795 0.79239 0.84953 0.85534 1.90728 1.41961 1.25595 1.87252 1.45729 1.57332 1.28262 1.04360 1.21314 0.98705 0.96117 0.83743 1.21638 1.02562 0.99606 0.90690 1.21831 0.99594 0.99155 0.94778 1.21223 0.96525 0.91882 0.85817 0.94497 1.22592 1.01190 0.95362 0.95715 1.22880 1.01210 0.96468 0.97012 1.21272 0.91414 0.87604 0.94892 1.44934 1.56907 1.11649 1.20918 1.19296 1.11283 0.89320 1.15941 0.90596 1.25662 0.97934 1.01837 1.00584 1.70154 1.25020 1.37406 1.27312 0.85198 0.76574 0.80263 0.78079 1.21179 1.22345 1.19633 0.87588 0.92404 0.90269 0.84175 0.81140 0.81146 0.79425 0.74109 0.92968 0.93088 0.89584 0.88937 0.94165 0.94512 0.88303 0.91095 0.91737 0.90125 0.95175 0.99158 0.94567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.49 71.98 0.68 -1.61 16 2 C 0.08 1.62 2.90 29.85 0.09 1.71 16 3 H 0.13 2.21 6.98 -2.39 -0.02 2.19 16 4 O -0.31 -7.90 9.30 -70.93 -0.66 -8.56 16 5 C 0.29 6.21 7.45 84.79 0.63 6.84 16 6 C -0.21 -3.51 10.04 22.47 0.23 -3.29 16 7 C -0.04 -0.37 10.17 22.44 0.23 -0.14 16 8 C -0.20 -1.58 10.11 22.37 0.23 -1.35 16 9 C 0.13 1.38 11.18 84.63 0.95 2.33 16 10 N -0.56 -9.80 8.64 -308.95 -2.67 -12.48 16 11 C 0.51 13.33 7.18 87.66 0.63 13.96 16 12 O -0.58 -21.45 16.51 15.96 0.26 -21.18 16 13 N -0.70 -14.15 5.52 -463.06 -2.56 -16.71 16 14 C 0.12 3.17 5.67 86.38 0.49 3.66 16 15 C -0.11 -2.43 5.07 30.59 0.16 -2.28 16 16 C -0.11 -3.92 4.69 30.59 0.14 -3.78 16 17 C 0.15 5.76 3.18 45.34 0.14 5.90 16 18 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 19 C -0.11 -3.33 5.61 31.78 0.18 -3.16 16 20 C -0.14 -4.86 7.08 31.99 0.23 -4.63 16 21 C 0.17 8.61 5.44 86.79 0.47 9.08 16 22 N -0.62 -31.50 3.14 -667.45 -2.09 -33.60 16 23 C -0.23 -12.91 9.75 84.03 0.82 -12.09 16 24 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 25 C -0.07 -3.91 5.47 84.86 0.46 -3.44 16 26 N -0.95 -58.48 10.58 21.65 0.23 -58.25 16 27 Si 0.97 47.09 29.55 68.60 2.03 49.12 16 28 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 29 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 30 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 31 H 0.11 0.96 7.94 -2.39 -0.02 0.94 16 32 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.14 2.27 8.06 -2.91 -0.02 2.24 16 35 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 36 H 0.17 0.15 8.06 -2.91 -0.02 0.13 16 37 H 0.19 0.76 8.06 -2.91 -0.02 0.74 16 38 H 0.42 4.99 8.27 -92.71 -0.77 4.22 16 39 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 41 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.09 1.69 7.57 -2.39 -0.02 1.67 16 43 H 0.04 1.53 8.07 -2.39 -0.02 1.51 16 44 H 0.04 1.46 7.89 -2.39 -0.02 1.44 16 45 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 46 H 0.07 2.03 7.79 -2.39 -0.02 2.01 16 47 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 48 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 49 H 0.03 1.70 6.90 -2.38 -0.02 1.68 16 50 H -0.01 -0.53 8.08 -2.39 -0.02 -0.55 16 51 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -82.21 416.18 1.43 -80.77 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 0.15 Total: 13.18 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: 6.75 Total: 7.70 kcal Atomic # 7 Polarization: -113.93 SS G_CDS: -7.09 Total: -121.03 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -0.40 Total: -29.75 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -82.21 1.43 -80.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492175280.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.337 kcal (2) G-P(sol) polarization free energy of solvation -82.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds