Wall clock time and date at job start Wed Apr 1 2020 05:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47114 * 2 1 4 4 O 1.42896 * 109.47125 * 240.00065 * 2 1 3 5 5 C 1.35679 * 117.00205 * 90.00066 * 4 2 1 6 6 C 1.38913 * 119.69093 * 180.02562 * 5 4 2 7 7 C 1.38380 * 119.11486 * 179.76686 * 6 5 4 8 8 C 1.38823 * 118.48092 * 0.44863 * 7 6 5 9 9 C 1.38041 * 119.29474 * 359.52781 * 8 7 6 10 10 N 1.31967 * 120.83080 * 0.25225 * 9 8 7 11 11 C 1.50703 * 109.47223 * 120.00047 * 2 1 3 12 12 O 1.21286 * 119.99772 * 120.00257 * 11 2 1 13 13 N 1.34776 * 119.99822 * 299.99883 * 11 2 1 14 14 C 1.46502 * 119.99712 * 179.97438 * 13 11 2 15 15 C 1.53001 * 109.47188 * 180.02562 * 14 13 11 16 16 C 1.52993 * 109.47055 * 180.02562 * 15 14 13 17 17 C 1.52998 * 109.46894 * 174.92461 * 16 15 14 18 18 H 1.09001 * 109.87655 * 304.34566 * 17 16 15 19 19 C 1.54318 * 109.88432 * 65.36608 * 17 16 15 20 20 C 1.55157 * 102.94726 * 141.60967 * 19 17 16 21 21 C 1.54910 * 101.57820 * 324.49779 * 20 19 17 22 22 N 1.47030 * 109.88229 * 183.33133 * 17 16 15 23 23 C 1.36937 * 125.64772 * 61.60994 * 22 17 16 24 24 H 1.07995 * 119.99932 * 14.15701 * 23 22 17 25 25 C 1.38815 * 119.99360 * 194.16011 * 23 22 17 26 26 N 1.31611 * 120.00477 * 359.97438 * 25 23 22 27 27 Si 1.86808 * 119.99469 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.46776 * 60.00022 * 27 25 23 29 29 H 1.48497 * 109.47104 * 180.02562 * 27 25 23 30 30 H 1.48496 * 109.47219 * 299.99976 * 27 25 23 31 31 H 1.09002 * 109.47400 * 299.99676 * 1 2 3 32 32 H 1.08995 * 109.47421 * 59.99762 * 1 2 3 33 33 H 1.09000 * 109.47114 * 179.97438 * 1 2 3 34 34 H 1.08008 * 120.44132 * 0.02562 * 6 5 4 35 35 H 1.07996 * 120.75379 * 180.24971 * 7 6 5 36 36 H 1.08008 * 120.35063 * 179.80653 * 8 7 6 37 37 H 1.08002 * 119.58396 * 180.23075 * 9 8 7 38 38 H 0.96990 * 120.00458 * 0.02562 * 13 11 2 39 39 H 1.08997 * 109.47738 * 300.00505 * 14 13 11 40 40 H 1.09007 * 109.46947 * 60.00089 * 14 13 11 41 41 H 1.09000 * 109.46996 * 300.00240 * 15 14 13 42 42 H 1.08995 * 109.46943 * 60.00333 * 15 14 13 43 43 H 1.08998 * 109.47657 * 294.92188 * 16 15 14 44 44 H 1.08998 * 109.47336 * 54.92701 * 16 15 14 45 45 H 1.09003 * 110.72048 * 259.97163 * 19 17 16 46 46 H 1.09000 * 110.71912 * 23.24160 * 19 17 16 47 47 H 1.09002 * 111.00190 * 82.57069 * 20 19 17 48 48 H 1.08997 * 111.00430 * 206.38368 * 20 19 17 49 49 H 1.09003 * 110.36473 * 155.84988 * 21 20 19 50 50 H 1.08999 * 110.36530 * 278.16798 * 21 20 19 51 51 H 0.97003 * 120.00092 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.2116 0.0829 -2.2742 6 6 2.6736 -0.5148 -3.4399 7 6 2.8743 0.2672 -4.5637 8 6 2.6133 1.6281 -4.4785 9 6 2.1556 2.1547 -3.2874 10 7 1.9695 1.3825 -2.2336 11 6 2.0323 -0.7104 1.2305 12 8 2.7296 -1.6965 1.1191 13 7 1.7067 -0.2499 2.4546 14 6 2.1946 -0.9409 3.6507 15 6 1.6843 -0.2200 4.9000 16 6 2.1944 -0.9412 6.1491 17 6 1.7908 -0.1503 7.3951 18 1 2.1581 0.8731 7.3195 19 6 0.2545 -0.1472 7.5401 20 6 0.0495 -0.2808 9.0722 21 6 1.2239 -1.2124 9.4629 22 7 2.3444 -0.7928 8.5962 23 6 3.6754 -0.9724 8.8636 24 1 4.4183 -0.4382 8.2901 25 6 4.0695 -1.8413 9.8719 26 7 3.1640 -2.4921 10.5711 27 14 5.8851 -2.0870 10.2362 28 1 6.4922 -0.7884 10.6240 29 1 6.0397 -3.0582 11.3489 30 1 6.5667 -2.6101 9.0251 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 2.8696 -1.5765 -3.4699 35 1 3.2289 -0.1706 -5.4850 36 1 2.7625 2.2672 -5.3363 37 1 1.9475 3.2122 -3.2170 38 1 1.1488 0.5384 2.5436 39 1 1.8310 -1.9684 3.6506 40 1 3.2847 -0.9413 3.6508 41 1 2.0476 0.8077 4.9004 42 1 0.5943 -0.2200 4.8997 43 1 1.7590 -1.9394 6.1957 44 1 3.2806 -1.0203 6.1050 45 1 -0.1654 0.7902 7.1752 46 1 -0.1840 -0.9969 7.0168 47 1 0.1388 0.6878 9.5642 48 1 -0.9103 -0.7449 9.2991 49 1 1.4851 -1.0739 10.5121 50 1 0.9629 -2.2530 9.2704 51 1 3.4395 -3.0995 11.2755 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001492175281.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:22 Heat of formation + Delta-G solvation = -45.175730 kcal Electronic energy + Delta-G solvation = -29491.209916 eV Core-core repulsion = 25390.404170 eV Total energy + Delta-G solvation = -4100.805747 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.84682 -40.80958 -39.47267 -38.79564 -36.71948 -34.76915 -34.03397 -33.44211 -32.84177 -31.24592 -30.97364 -29.39884 -26.72014 -26.22500 -25.34127 -24.48487 -23.72344 -22.73582 -21.85338 -21.52269 -20.67551 -19.60671 -18.80647 -18.55881 -17.51179 -17.10489 -16.95253 -16.87281 -16.73538 -16.49685 -16.03948 -15.76932 -15.52821 -15.38161 -15.16237 -14.52679 -14.33795 -14.23835 -14.00851 -13.85121 -13.69327 -13.56574 -13.40018 -13.13018 -13.00699 -12.91806 -12.79095 -12.72580 -12.66647 -12.24764 -12.21239 -12.04046 -11.83270 -11.65966 -11.52861 -11.29740 -11.15578 -10.95794 -10.87084 -10.64579 -10.60103 -10.22512 -9.50534 -8.77024 -7.84871 -5.20029 0.19751 0.31559 1.38909 1.43516 1.46347 1.48508 1.52240 2.43287 2.50250 2.82180 3.27415 3.33327 3.52557 3.71133 3.84763 3.94499 3.96693 4.01758 4.05521 4.11803 4.17313 4.22728 4.26292 4.36152 4.37136 4.43435 4.62653 4.66114 4.68449 4.77858 4.80447 4.83458 4.85727 4.99691 5.04800 5.06594 5.08958 5.14528 5.24944 5.29280 5.30012 5.36801 5.50946 5.52307 5.53598 5.69156 5.72158 5.80836 6.15964 6.28248 6.43351 6.84303 7.09318 7.13152 7.83215 8.50819 9.26501 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018056 B = 0.001685 C = 0.001594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.357811 B =16610.999861 C =17558.579897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.079 3.921 3 H 0.125 0.875 4 O -0.306 6.306 5 C 0.293 3.707 6 C -0.208 4.208 7 C -0.037 4.037 8 C -0.205 4.205 9 C 0.128 3.872 10 N -0.558 5.558 11 C 0.509 3.491 12 O -0.577 6.577 13 N -0.703 5.703 14 C 0.125 3.875 15 C -0.107 4.107 16 C -0.113 4.113 17 C 0.151 3.849 18 H 0.036 0.964 19 C -0.111 4.111 20 C -0.137 4.137 21 C 0.173 3.827 22 N -0.620 5.620 23 C -0.230 4.230 24 H 0.075 0.925 25 C -0.067 4.067 26 N -0.949 5.949 27 Si 0.970 3.030 28 H -0.276 1.276 29 H -0.295 1.295 30 H -0.281 1.281 31 H 0.107 0.893 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.141 0.859 35 H 0.171 0.829 36 H 0.171 0.829 37 H 0.189 0.811 38 H 0.421 0.579 39 H 0.054 0.946 40 H 0.048 0.952 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.040 0.960 44 H 0.035 0.965 45 H 0.098 0.902 46 H 0.071 0.929 47 H 0.064 0.936 48 H 0.081 0.919 49 H 0.030 0.970 50 H -0.009 1.009 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.270 13.231 -30.997 34.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.019 3.981 3 H 0.142 0.858 4 O -0.213 6.213 5 C 0.115 3.885 6 C -0.228 4.228 7 C -0.063 4.063 8 C -0.224 4.224 9 C -0.027 4.027 10 N -0.283 5.283 11 C 0.295 3.705 12 O -0.456 6.456 13 N -0.357 5.357 14 C 0.001 3.999 15 C -0.145 4.145 16 C -0.154 4.154 17 C 0.045 3.955 18 H 0.054 0.946 19 C -0.148 4.148 20 C -0.176 4.176 21 C 0.048 3.952 22 N -0.344 5.344 23 C -0.360 4.360 24 H 0.093 0.907 25 C -0.260 4.260 26 N -0.598 5.598 27 Si 0.799 3.201 28 H -0.202 1.202 29 H -0.221 1.221 30 H -0.207 1.207 31 H 0.125 0.875 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.159 0.841 35 H 0.189 0.811 36 H 0.188 0.812 37 H 0.205 0.795 38 H 0.259 0.741 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.102 0.898 42 H 0.113 0.887 43 H 0.059 0.941 44 H 0.054 0.946 45 H 0.117 0.883 46 H 0.090 0.910 47 H 0.082 0.918 48 H 0.099 0.901 49 H 0.048 0.952 50 H 0.009 0.991 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.915 12.492 -30.071 33.761 hybrid contribution 1.432 -0.912 0.246 1.715 sum -7.483 11.579 -29.825 32.857 Atomic orbital electron populations 1.22156 0.90177 1.03561 1.05377 1.22130 0.97200 0.97537 0.81255 0.85777 1.86345 1.80652 1.35790 1.18539 1.20149 0.93122 0.88146 0.87058 1.21349 1.06743 1.02847 0.91898 1.21853 0.92888 0.93740 0.97789 1.22419 1.03159 0.96286 1.00572 1.23051 0.92163 1.00323 0.87197 1.67222 1.22600 1.04365 1.34065 1.20799 0.79884 0.84289 0.85547 1.90730 1.39393 1.28137 1.87330 1.45730 1.53356 1.32453 1.04122 1.21317 0.98531 0.96314 0.83729 1.21638 1.02441 0.99774 0.90639 1.21830 0.99771 0.98951 0.94805 1.21226 0.93779 0.94481 0.85986 0.94602 1.22590 0.93843 1.02846 0.95548 1.22878 0.98081 0.99615 0.96995 1.21273 0.86167 0.93469 0.94265 1.44926 1.01604 1.69068 1.18814 1.19249 0.83060 1.18758 1.14922 0.90683 1.25662 1.01423 0.98714 1.00175 1.70136 1.32707 1.32065 1.24903 0.85278 0.80350 0.77458 0.77044 1.20189 1.22139 1.20735 0.87477 0.90349 0.92186 0.84136 0.81118 0.81151 0.79466 0.74109 0.92730 0.93336 0.89769 0.88737 0.94071 0.94617 0.88306 0.91004 0.91774 0.90088 0.95185 0.99136 0.94544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 9.43 71.98 0.68 -1.52 16 2 C 0.08 1.61 2.91 29.85 0.09 1.70 16 3 H 0.12 2.25 6.98 -2.39 -0.02 2.23 16 4 O -0.31 -7.91 9.29 -70.93 -0.66 -8.57 16 5 C 0.29 6.27 7.45 84.79 0.63 6.90 16 6 C -0.21 -3.53 10.04 22.47 0.23 -3.31 16 7 C -0.04 -0.38 10.17 22.44 0.23 -0.15 16 8 C -0.20 -1.63 10.10 22.36 0.23 -1.40 16 9 C 0.13 1.42 11.18 84.63 0.95 2.36 16 10 N -0.56 -9.97 8.65 -308.95 -2.67 -12.64 16 11 C 0.51 13.34 7.23 87.66 0.63 13.98 16 12 O -0.58 -21.50 16.50 15.99 0.26 -21.24 16 13 N -0.70 -14.14 5.45 -463.04 -2.52 -16.66 16 14 C 0.12 3.17 5.67 86.38 0.49 3.66 16 15 C -0.11 -2.43 5.07 30.59 0.16 -2.28 16 16 C -0.11 -3.93 4.69 30.59 0.14 -3.78 16 17 C 0.15 5.75 3.18 45.34 0.14 5.90 16 18 H 0.04 1.34 8.14 -2.39 -0.02 1.33 16 19 C -0.11 -3.31 5.61 31.78 0.18 -3.13 16 20 C -0.14 -4.85 7.09 31.99 0.23 -4.62 16 21 C 0.17 8.60 5.44 86.79 0.47 9.07 16 22 N -0.62 -31.54 3.14 -667.44 -2.09 -33.63 16 23 C -0.23 -13.02 9.75 84.03 0.82 -12.20 16 24 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 25 C -0.07 -3.88 5.47 84.86 0.46 -3.42 16 26 N -0.95 -58.40 10.58 21.65 0.23 -58.17 16 27 Si 0.97 47.10 29.55 68.60 2.03 49.13 16 28 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 29 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 30 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 31 H 0.11 0.87 7.56 -2.39 -0.02 0.85 16 32 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.14 2.28 8.06 -2.91 -0.02 2.25 16 35 H 0.17 0.59 8.06 -2.91 -0.02 0.57 16 36 H 0.17 0.19 8.06 -2.91 -0.02 0.16 16 37 H 0.19 0.83 8.06 -2.91 -0.02 0.80 16 38 H 0.42 4.98 7.89 -92.72 -0.73 4.25 16 39 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16 40 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.09 1.70 7.57 -2.39 -0.02 1.68 16 43 H 0.04 1.56 8.07 -2.39 -0.02 1.54 16 44 H 0.03 1.42 7.89 -2.39 -0.02 1.40 16 45 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.07 2.03 7.79 -2.39 -0.02 2.01 16 47 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 48 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 49 H 0.03 1.69 6.90 -2.39 -0.02 1.67 16 50 H -0.01 -0.52 8.08 -2.39 -0.02 -0.54 16 51 H 0.25 14.77 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -82.30 415.35 1.50 -80.80 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 0.18 Total: 13.22 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 6.75 Total: 7.77 kcal Atomic # 7 Polarization: -114.04 SS G_CDS: -7.06 Total: -121.10 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -0.40 Total: -29.80 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -82.30 1.50 -80.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492175281.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.622 kcal (2) G-P(sol) polarization free energy of solvation -82.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds