Wall clock time and date at job start Wed Apr 1 2020 05:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47418 * 2 1 4 4 O 1.42896 * 109.47233 * 119.99766 * 2 1 3 5 5 C 1.35679 * 117.00142 * 270.00319 * 4 2 1 6 6 C 1.38919 * 119.68532 * 179.97438 * 5 4 2 7 7 C 1.38375 * 119.11064 * 179.97438 * 6 5 4 8 8 C 1.38825 * 118.49030 * 359.97438 * 7 6 5 9 9 C 1.38050 * 119.28457 * 0.02562 * 8 7 6 10 10 N 1.31966 * 120.83638 * 359.74005 * 9 8 7 11 11 C 1.50706 * 109.47337 * 239.99792 * 2 1 3 12 12 O 1.21274 * 119.99890 * 245.00553 * 11 2 1 13 13 N 1.34769 * 119.99681 * 64.99768 * 11 2 1 14 14 C 1.46503 * 119.99947 * 180.02562 * 13 11 2 15 15 C 1.53003 * 109.47330 * 180.02562 * 14 13 11 16 16 C 1.52994 * 109.47180 * 179.97438 * 15 14 13 17 17 C 1.52998 * 109.47222 * 176.23710 * 16 15 14 18 18 H 1.08993 * 109.87692 * 305.71671 * 17 16 15 19 19 C 1.54329 * 109.88545 * 184.53783 * 17 16 15 20 20 C 1.55149 * 102.94477 * 218.39589 * 19 17 16 21 21 C 1.54909 * 101.58271 * 35.49904 * 20 19 17 22 22 N 1.47020 * 109.88110 * 66.73327 * 17 16 15 23 23 C 1.36941 * 125.65079 * 298.32373 * 22 17 16 24 24 H 1.08004 * 119.99481 * 339.80162 * 23 22 17 25 25 C 1.38805 * 120.00611 * 159.79540 * 23 22 17 26 26 N 1.31609 * 120.00361 * 160.96438 * 25 23 22 27 27 Si 1.86805 * 119.99700 * 340.97162 * 25 23 22 28 28 H 1.48497 * 109.47560 * 84.77705 * 27 25 23 29 29 H 1.48506 * 109.46777 * 204.77540 * 27 25 23 30 30 H 1.48499 * 109.47176 * 324.77193 * 27 25 23 31 31 H 1.08994 * 109.47014 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46868 * 300.00619 * 1 2 3 33 33 H 1.09001 * 109.46598 * 60.00243 * 1 2 3 34 34 H 1.08001 * 120.44446 * 359.97438 * 6 5 4 35 35 H 1.08003 * 120.75845 * 180.02562 * 7 6 5 36 36 H 1.07994 * 120.36072 * 180.02562 * 8 7 6 37 37 H 1.07996 * 119.58324 * 179.97438 * 9 8 7 38 38 H 0.96998 * 120.00722 * 0.02562 * 13 11 2 39 39 H 1.08993 * 109.46770 * 60.00135 * 14 13 11 40 40 H 1.09001 * 109.46750 * 299.99945 * 14 13 11 41 41 H 1.08999 * 109.46467 * 299.99901 * 15 14 13 42 42 H 1.08997 * 109.47065 * 59.99854 * 15 14 13 43 43 H 1.09001 * 109.47422 * 296.24173 * 16 15 14 44 44 H 1.09008 * 109.46928 * 56.23964 * 16 15 14 45 45 H 1.09000 * 110.71881 * 336.75911 * 19 17 16 46 46 H 1.09001 * 110.71323 * 100.02454 * 19 17 16 47 47 H 1.09002 * 111.00114 * 277.42795 * 20 19 17 48 48 H 1.08998 * 111.03804 * 153.59071 * 20 19 17 49 49 H 1.09003 * 110.36756 * 204.15076 * 21 20 19 50 50 H 1.09005 * 110.36067 * 81.83485 * 21 20 19 51 51 H 0.97001 * 120.00421 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2116 0.0830 2.2742 6 6 2.6737 -0.5148 3.4399 7 6 2.8795 0.2681 4.5621 8 6 2.6149 1.6283 4.4781 9 6 2.1575 2.1550 3.2869 10 7 1.9753 1.3835 2.2319 11 6 2.0324 -0.7105 -1.2305 12 8 2.6529 -1.7467 -1.1214 13 7 1.7919 -0.1943 -2.4519 14 6 2.2798 -0.8852 -3.6482 15 6 1.8757 -0.0947 -4.8942 16 6 2.3858 -0.8159 -6.1434 17 6 1.9020 -0.0765 -7.3925 18 1 0.8183 0.0358 -7.3602 19 6 2.3144 -0.8580 -8.6578 20 6 2.7027 0.2688 -9.6510 21 6 3.3444 1.3120 -8.7025 22 7 2.5397 1.2459 -7.4691 23 6 2.4075 2.2504 -6.5477 24 1 1.5703 2.2504 -5.8654 25 6 3.3495 3.2682 -6.4905 26 7 3.0550 4.4048 -5.8960 27 14 5.0353 3.0248 -7.2577 28 1 4.9725 3.3513 -8.7050 29 1 6.0163 3.9184 -6.5908 30 1 5.4574 1.6114 -7.0870 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5140 0.8900 33 1 -0.3632 0.5138 -0.8900 34 1 2.8697 -1.5765 3.4699 35 1 3.2385 -0.1689 5.4822 36 1 2.7653 2.2676 5.3355 37 1 1.9498 3.2125 3.2163 38 1 1.2959 0.6347 -2.5392 39 1 1.8448 -1.8835 -3.6938 40 1 3.3661 -0.9637 -3.6046 41 1 0.7894 -0.0157 -4.9379 42 1 2.3110 0.9035 -4.8483 43 1 3.4755 -0.8356 -6.1321 44 1 2.0040 -1.8368 -6.1548 45 1 3.1693 -1.5020 -8.4517 46 1 1.4762 -1.4392 -9.0422 47 1 1.8198 0.6782 -10.1420 48 1 3.4251 -0.0883 -10.3850 49 1 3.2869 2.3087 -9.1401 50 1 4.3812 1.0477 -8.4938 51 1 3.7132 5.1163 -5.8563 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492175282.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:27 Heat of formation + Delta-G solvation = -15.712213 kcal Electronic energy + Delta-G solvation = -30272.773924 eV Core-core repulsion = 26173.245811 eV Total energy + Delta-G solvation = -4099.528113 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.96359 -39.68161 -38.24963 -37.80619 -35.26589 -33.03853 -32.72100 -32.61900 -31.86742 -30.22795 -29.93213 -28.41636 -25.43656 -24.68276 -24.10702 -23.68539 -22.77473 -21.57050 -20.58932 -20.15062 -19.17902 -18.71553 -17.61465 -16.83739 -16.57056 -16.16782 -16.00118 -15.82465 -15.56269 -15.13483 -15.05611 -14.76103 -14.20221 -14.00661 -13.58509 -13.36683 -13.35100 -13.22788 -12.99199 -12.77493 -12.54589 -12.40723 -12.23227 -12.08090 -11.96128 -11.91734 -11.31417 -11.28821 -11.15587 -10.98554 -10.81182 -10.43447 -10.28830 -10.22217 -10.11921 -9.93087 -9.84832 -9.76258 -9.58214 -9.29026 -8.90012 -8.73906 -8.66850 -7.01415 -5.95970 -3.26804 0.89978 1.00622 2.46774 2.65551 3.34217 3.48232 3.49255 3.50403 3.55891 4.03104 4.53535 4.57702 4.64125 4.74829 4.80330 4.85676 4.94623 4.95803 5.01870 5.19697 5.26336 5.34315 5.41537 5.46259 5.50754 5.54678 5.56334 5.63549 5.69407 5.82905 5.88789 5.91788 5.96762 6.03231 6.12795 6.15804 6.16960 6.26217 6.31356 6.42323 6.45658 6.59803 6.69038 6.71242 6.81231 7.00313 7.04547 7.13619 7.57056 7.63522 7.74801 8.27489 8.29156 8.81896 9.68100 10.20754 11.19678 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014419 B = 0.002243 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.427974 B =12481.462854 C =13673.981457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.071 3.929 3 H 0.116 0.884 4 O -0.277 6.277 5 C 0.325 3.675 6 C -0.190 4.190 7 C -0.041 4.041 8 C -0.216 4.216 9 C 0.142 3.858 10 N -0.541 5.541 11 C 0.514 3.486 12 O -0.530 6.530 13 N -0.717 5.717 14 C 0.123 3.877 15 C -0.141 4.141 16 C -0.116 4.116 17 C 0.161 3.839 18 H 0.042 0.958 19 C -0.127 4.127 20 C -0.132 4.132 21 C 0.106 3.894 22 N -0.604 5.604 23 C -0.234 4.234 24 H 0.096 0.904 25 C 0.020 3.980 26 N -0.912 5.912 27 Si 0.885 3.115 28 H -0.287 1.287 29 H -0.306 1.306 30 H -0.275 1.275 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.161 0.839 38 H 0.405 0.595 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.114 0.886 43 H 0.059 0.941 44 H 0.048 0.952 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.067 0.933 48 H 0.061 0.939 49 H 0.056 0.944 50 H 0.026 0.974 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.530 -8.217 14.774 17.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.011 3.989 3 H 0.134 0.866 4 O -0.182 6.182 5 C 0.146 3.854 6 C -0.211 4.211 7 C -0.067 4.067 8 C -0.237 4.237 9 C -0.014 4.014 10 N -0.264 5.264 11 C 0.298 3.702 12 O -0.406 6.406 13 N -0.369 5.369 14 C 0.000 4.000 15 C -0.179 4.179 16 C -0.156 4.156 17 C 0.054 3.946 18 H 0.060 0.940 19 C -0.165 4.165 20 C -0.170 4.170 21 C -0.019 4.019 22 N -0.330 5.330 23 C -0.361 4.361 24 H 0.113 0.887 25 C -0.178 4.178 26 N -0.556 5.556 27 Si 0.717 3.283 28 H -0.215 1.215 29 H -0.234 1.234 30 H -0.201 1.201 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.160 0.840 35 H 0.158 0.842 36 H 0.155 0.845 37 H 0.178 0.822 38 H 0.240 0.760 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.132 0.868 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.086 0.914 48 H 0.080 0.920 49 H 0.074 0.926 50 H 0.043 0.957 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.297 -8.678 14.118 17.119 hybrid contribution 1.146 0.243 0.304 1.211 sum -3.151 -8.434 14.422 17.002 Atomic orbital electron populations 1.22152 0.92305 1.03531 1.04001 1.22125 0.95834 0.98233 0.82689 0.86617 1.86376 1.79763 1.34438 1.17645 1.19929 0.91007 0.87423 0.87067 1.21092 1.06265 1.02269 0.91455 1.21414 0.94157 0.93465 0.97624 1.21987 1.05425 0.96204 1.00045 1.22466 0.92377 0.99310 0.87216 1.67290 1.21875 1.04672 1.32608 1.20150 0.80169 0.85504 0.84374 1.90710 1.39951 1.23360 1.86570 1.45948 1.57610 1.27993 1.05378 1.21523 0.99370 0.95641 0.83479 1.22144 1.01058 1.02867 0.91809 1.21876 1.00913 0.97344 0.95426 1.21006 0.96178 0.85503 0.91917 0.93978 1.22605 1.00590 0.97258 0.96086 1.22713 1.00405 0.96806 0.97126 1.21992 0.94372 0.97864 0.87625 1.44867 1.56133 1.10865 1.21123 1.18593 1.06682 0.98801 1.12052 0.88656 1.25009 0.98075 0.96068 0.98653 1.69785 1.34739 1.03696 1.47343 0.86972 0.86135 0.77080 0.78143 1.21457 1.23393 1.20096 0.91325 0.90856 0.90004 0.83999 0.84178 0.84550 0.82218 0.76006 0.92269 0.91805 0.92378 0.86817 0.92258 0.93382 0.91729 0.91786 0.91446 0.92000 0.92571 0.95685 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.49 37.16 0.35 -1.37 16 2 C 0.07 0.96 2.90 -27.88 -0.08 0.87 16 3 H 0.12 1.53 6.98 -51.93 -0.36 1.17 16 4 O -0.28 -4.05 9.30 -38.60 -0.36 -4.41 16 5 C 0.32 4.15 7.46 -17.12 -0.13 4.03 16 6 C -0.19 -1.95 10.04 -39.28 -0.39 -2.35 16 7 C -0.04 -0.32 10.17 -39.31 -0.40 -0.72 16 8 C -0.22 -1.61 10.11 -39.43 -0.40 -2.01 16 9 C 0.14 1.30 11.18 -17.56 -0.20 1.10 16 10 N -0.54 -6.52 8.64 -13.33 -0.12 -6.64 16 11 C 0.51 8.17 7.18 -10.99 -0.08 8.10 16 12 O -0.53 -10.43 16.51 -14.30 -0.24 -10.67 16 13 N -0.72 -10.48 5.52 -60.29 -0.33 -10.81 16 14 C 0.12 1.93 5.67 -4.04 -0.02 1.91 16 15 C -0.14 -2.37 4.57 -26.73 -0.12 -2.49 16 16 C -0.12 -1.94 4.73 -26.74 -0.13 -2.07 16 17 C 0.16 2.94 3.25 -66.95 -0.22 2.72 16 18 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 19 C -0.13 -1.97 6.48 -24.90 -0.16 -2.13 16 20 C -0.13 -2.17 7.08 -24.59 -0.17 -2.35 16 21 C 0.11 2.26 4.69 -2.53 -0.01 2.24 16 22 N -0.60 -13.61 2.93 -162.57 -0.48 -14.09 16 23 C -0.23 -6.08 8.12 -15.06 -0.12 -6.20 16 24 H 0.10 2.56 6.90 -52.48 -0.36 2.20 16 25 C 0.02 0.57 5.46 -17.44 -0.10 0.47 16 26 N -0.91 -26.94 13.97 55.49 0.78 -26.16 16 27 Si 0.89 22.35 24.25 -169.99 -4.12 18.23 16 28 H -0.29 -7.08 6.54 56.52 0.37 -6.71 16 29 H -0.31 -7.93 7.11 56.52 0.40 -7.53 16 30 H -0.28 -6.87 6.44 56.52 0.36 -6.51 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.74 7.92 -51.93 -0.41 0.33 16 34 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.14 0.66 8.06 -52.48 -0.42 0.23 16 36 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 37 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.41 5.19 8.26 -40.82 -0.34 4.85 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.11 2.33 5.07 -51.93 -0.26 2.06 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 45 H 0.06 0.95 7.85 -51.93 -0.41 0.55 16 46 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.06 1.28 6.61 -51.93 -0.34 0.94 16 50 H 0.03 0.56 5.38 -51.93 -0.28 0.29 16 51 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 404.84 15.07 6.10 6.10 Total: -1.00 -33.43 404.84 -9.46 -42.89 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -8.31 Total: 5.80 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -2.38 Total: -0.24 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: -0.15 Total: -57.71 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.60 Total: -15.07 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.12 Total: 18.23 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.43 -9.46 -42.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492175282.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.175 kcal (2) G-P(sol) polarization free energy of solvation -33.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds