Wall clock time and date at job start Wed Apr 1 2020 05:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47418 * 2 1 4 4 O 1.42896 * 109.47233 * 119.99766 * 2 1 3 5 5 C 1.35679 * 117.00142 * 270.00319 * 4 2 1 6 6 C 1.38919 * 119.68532 * 179.97438 * 5 4 2 7 7 C 1.38375 * 119.11064 * 179.97438 * 6 5 4 8 8 C 1.38825 * 118.49030 * 359.97438 * 7 6 5 9 9 C 1.38050 * 119.28457 * 0.02562 * 8 7 6 10 10 N 1.31966 * 120.83638 * 359.74005 * 9 8 7 11 11 C 1.50706 * 109.47337 * 239.99792 * 2 1 3 12 12 O 1.21274 * 119.99890 * 245.00553 * 11 2 1 13 13 N 1.34769 * 119.99681 * 64.99768 * 11 2 1 14 14 C 1.46503 * 119.99947 * 180.02562 * 13 11 2 15 15 C 1.53003 * 109.47330 * 180.02562 * 14 13 11 16 16 C 1.52994 * 109.47180 * 179.97438 * 15 14 13 17 17 C 1.52998 * 109.47222 * 176.23710 * 16 15 14 18 18 H 1.08993 * 109.87692 * 305.71671 * 17 16 15 19 19 C 1.54329 * 109.88545 * 184.53783 * 17 16 15 20 20 C 1.55149 * 102.94477 * 218.39589 * 19 17 16 21 21 C 1.54909 * 101.58271 * 35.49904 * 20 19 17 22 22 N 1.47020 * 109.88110 * 66.73327 * 17 16 15 23 23 C 1.36941 * 125.65079 * 298.32373 * 22 17 16 24 24 H 1.08004 * 119.99481 * 339.80162 * 23 22 17 25 25 C 1.38805 * 120.00611 * 159.79540 * 23 22 17 26 26 N 1.31609 * 120.00361 * 160.96438 * 25 23 22 27 27 Si 1.86805 * 119.99700 * 340.97162 * 25 23 22 28 28 H 1.48497 * 109.47560 * 84.77705 * 27 25 23 29 29 H 1.48506 * 109.46777 * 204.77540 * 27 25 23 30 30 H 1.48499 * 109.47176 * 324.77193 * 27 25 23 31 31 H 1.08994 * 109.47014 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46868 * 300.00619 * 1 2 3 33 33 H 1.09001 * 109.46598 * 60.00243 * 1 2 3 34 34 H 1.08001 * 120.44446 * 359.97438 * 6 5 4 35 35 H 1.08003 * 120.75845 * 180.02562 * 7 6 5 36 36 H 1.07994 * 120.36072 * 180.02562 * 8 7 6 37 37 H 1.07996 * 119.58324 * 179.97438 * 9 8 7 38 38 H 0.96998 * 120.00722 * 0.02562 * 13 11 2 39 39 H 1.08993 * 109.46770 * 60.00135 * 14 13 11 40 40 H 1.09001 * 109.46750 * 299.99945 * 14 13 11 41 41 H 1.08999 * 109.46467 * 299.99901 * 15 14 13 42 42 H 1.08997 * 109.47065 * 59.99854 * 15 14 13 43 43 H 1.09001 * 109.47422 * 296.24173 * 16 15 14 44 44 H 1.09008 * 109.46928 * 56.23964 * 16 15 14 45 45 H 1.09000 * 110.71881 * 336.75911 * 19 17 16 46 46 H 1.09001 * 110.71323 * 100.02454 * 19 17 16 47 47 H 1.09002 * 111.00114 * 277.42795 * 20 19 17 48 48 H 1.08998 * 111.03804 * 153.59071 * 20 19 17 49 49 H 1.09003 * 110.36756 * 204.15076 * 21 20 19 50 50 H 1.09005 * 110.36067 * 81.83485 * 21 20 19 51 51 H 0.97001 * 120.00421 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2116 0.0830 2.2742 6 6 2.6737 -0.5148 3.4399 7 6 2.8795 0.2681 4.5621 8 6 2.6149 1.6283 4.4781 9 6 2.1575 2.1550 3.2869 10 7 1.9753 1.3835 2.2319 11 6 2.0324 -0.7105 -1.2305 12 8 2.6529 -1.7467 -1.1214 13 7 1.7919 -0.1943 -2.4519 14 6 2.2798 -0.8852 -3.6482 15 6 1.8757 -0.0947 -4.8942 16 6 2.3858 -0.8159 -6.1434 17 6 1.9020 -0.0765 -7.3925 18 1 0.8183 0.0358 -7.3602 19 6 2.3144 -0.8580 -8.6578 20 6 2.7027 0.2688 -9.6510 21 6 3.3444 1.3120 -8.7025 22 7 2.5397 1.2459 -7.4691 23 6 2.4075 2.2504 -6.5477 24 1 1.5703 2.2504 -5.8654 25 6 3.3495 3.2682 -6.4905 26 7 3.0550 4.4048 -5.8960 27 14 5.0353 3.0248 -7.2577 28 1 4.9725 3.3513 -8.7050 29 1 6.0163 3.9184 -6.5908 30 1 5.4574 1.6114 -7.0870 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5140 0.8900 33 1 -0.3632 0.5138 -0.8900 34 1 2.8697 -1.5765 3.4699 35 1 3.2385 -0.1689 5.4822 36 1 2.7653 2.2676 5.3355 37 1 1.9498 3.2125 3.2163 38 1 1.2959 0.6347 -2.5392 39 1 1.8448 -1.8835 -3.6938 40 1 3.3661 -0.9637 -3.6046 41 1 0.7894 -0.0157 -4.9379 42 1 2.3110 0.9035 -4.8483 43 1 3.4755 -0.8356 -6.1321 44 1 2.0040 -1.8368 -6.1548 45 1 3.1693 -1.5020 -8.4517 46 1 1.4762 -1.4392 -9.0422 47 1 1.8198 0.6782 -10.1420 48 1 3.4251 -0.0883 -10.3850 49 1 3.2869 2.3087 -9.1401 50 1 4.3812 1.0477 -8.4938 51 1 3.7132 5.1163 -5.8563 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001492175282.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:26 Heat of formation + Delta-G solvation = -38.606323 kcal Electronic energy + Delta-G solvation = -30273.766687 eV Core-core repulsion = 26173.245811 eV Total energy + Delta-G solvation = -4100.520876 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.85637 -40.81539 -39.75249 -38.81226 -36.63892 -34.58760 -34.26267 -33.46603 -32.93077 -31.72306 -31.02690 -29.79291 -26.70394 -26.16431 -25.39236 -24.50322 -23.75322 -23.06592 -21.94602 -21.37276 -20.72354 -19.60920 -18.87445 -18.55202 -17.52388 -17.44072 -17.06984 -16.98734 -16.76458 -16.67407 -16.35600 -15.55084 -15.41046 -15.26808 -15.00059 -14.85708 -14.48358 -14.34843 -14.26075 -14.00849 -13.82255 -13.65267 -13.45018 -13.42035 -13.07961 -12.95022 -12.80561 -12.74609 -12.61614 -12.41610 -12.23889 -12.09645 -11.80451 -11.58780 -11.43757 -11.37955 -11.12730 -10.94617 -10.85870 -10.68290 -10.59498 -10.20664 -9.52043 -8.92195 -8.09373 -5.33588 0.18302 0.31304 1.29582 1.38024 1.39045 1.44706 1.46378 2.45190 2.45582 2.80980 3.15104 3.26354 3.38333 3.51298 3.82482 3.85905 3.94694 3.97934 4.03748 4.10025 4.13693 4.17534 4.21593 4.25863 4.35402 4.45700 4.51239 4.63087 4.64448 4.68290 4.77305 4.79207 4.82163 4.86210 4.96852 5.02386 5.03352 5.06088 5.15137 5.19895 5.27119 5.27797 5.34978 5.40089 5.51345 5.63475 5.65379 5.84150 6.13586 6.20051 6.39329 6.84599 6.86732 7.03159 7.64902 8.23906 9.09967 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014419 B = 0.002243 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.427974 B =12481.462854 C =13673.981457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.077 3.923 3 H 0.114 0.886 4 O -0.302 6.302 5 C 0.290 3.710 6 C -0.203 4.203 7 C -0.036 4.036 8 C -0.203 4.203 9 C 0.124 3.876 10 N -0.564 5.564 11 C 0.513 3.487 12 O -0.572 6.572 13 N -0.709 5.709 14 C 0.131 3.869 15 C -0.129 4.129 16 C -0.112 4.112 17 C 0.150 3.850 18 H 0.046 0.954 19 C -0.118 4.118 20 C -0.121 4.121 21 C 0.095 3.905 22 N -0.621 5.621 23 C -0.199 4.199 24 H 0.080 0.920 25 C -0.039 4.039 26 N -0.958 5.958 27 Si 0.933 3.067 28 H -0.280 1.280 29 H -0.320 1.320 30 H -0.273 1.273 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.146 0.854 35 H 0.176 0.824 36 H 0.172 0.828 37 H 0.183 0.817 38 H 0.414 0.586 39 H 0.072 0.928 40 H 0.045 0.955 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.041 0.959 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.098 0.902 47 H 0.074 0.926 48 H 0.090 0.910 49 H 0.033 0.967 50 H 0.016 0.984 51 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.263 -9.850 15.008 18.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.017 3.983 3 H 0.131 0.869 4 O -0.209 6.209 5 C 0.112 3.888 6 C -0.224 4.224 7 C -0.061 4.061 8 C -0.223 4.223 9 C -0.031 4.031 10 N -0.288 5.288 11 C 0.299 3.701 12 O -0.451 6.451 13 N -0.362 5.362 14 C 0.008 3.992 15 C -0.166 4.166 16 C -0.152 4.152 17 C 0.045 3.955 18 H 0.064 0.936 19 C -0.155 4.155 20 C -0.159 4.159 21 C -0.030 4.030 22 N -0.347 5.347 23 C -0.328 4.328 24 H 0.098 0.902 25 C -0.233 4.233 26 N -0.607 5.607 27 Si 0.765 3.235 28 H -0.207 1.207 29 H -0.250 1.250 30 H -0.198 1.198 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.116 0.884 34 H 0.164 0.836 35 H 0.193 0.807 36 H 0.190 0.810 37 H 0.200 0.800 38 H 0.251 0.749 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.060 0.940 44 H 0.101 0.899 45 H 0.093 0.907 46 H 0.116 0.884 47 H 0.093 0.907 48 H 0.108 0.892 49 H 0.051 0.949 50 H 0.034 0.966 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.048 -10.335 14.318 18.366 hybrid contribution 1.314 0.730 0.321 1.537 sum -3.734 -9.605 14.639 17.902 Atomic orbital electron populations 1.22112 0.90186 1.03713 1.05012 1.22071 0.97297 0.97295 0.81626 0.86858 1.86324 1.80654 1.35569 1.18340 1.20225 0.93287 0.88049 0.87219 1.21359 1.06444 1.02964 0.91624 1.21875 0.92828 0.93519 0.97886 1.22415 1.03018 0.96508 1.00319 1.23020 0.92488 1.00227 0.87353 1.67228 1.22669 1.04687 1.34196 1.20646 0.79274 0.84986 0.85228 1.90676 1.41912 1.25319 1.87199 1.45909 1.57151 1.28125 1.05005 1.21372 0.98313 0.96153 0.83409 1.21924 1.01412 1.00712 0.92581 1.21828 0.99844 0.99007 0.94472 1.21295 0.95956 0.83946 0.94313 0.93649 1.22621 1.02301 0.96791 0.93813 1.22681 1.00986 0.95417 0.96826 1.22090 0.94261 0.98480 0.88159 1.45084 1.56262 1.12226 1.21095 1.18620 1.04930 0.98525 1.10711 0.90223 1.25481 1.00714 0.96449 1.00661 1.69889 1.35343 1.04683 1.50749 0.86188 0.83147 0.76499 0.77695 1.20664 1.24956 1.19836 0.91488 0.90310 0.88429 0.83632 0.80665 0.81045 0.80010 0.74931 0.90995 0.93695 0.91127 0.90844 0.94001 0.89860 0.90689 0.88354 0.90692 0.89156 0.94862 0.96616 0.93468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 9.49 71.98 0.68 -2.56 16 2 C 0.08 2.14 2.90 29.85 0.09 2.23 16 3 H 0.11 3.14 6.98 -2.38 -0.02 3.13 16 4 O -0.30 -9.25 9.30 -70.98 -0.66 -9.91 16 5 C 0.29 7.61 7.46 84.79 0.63 8.24 16 6 C -0.20 -4.12 10.04 22.47 0.23 -3.89 16 7 C -0.04 -0.47 10.17 22.44 0.23 -0.25 16 8 C -0.20 -2.48 10.11 22.37 0.23 -2.25 16 9 C 0.12 2.11 11.18 84.63 0.95 3.06 16 10 N -0.56 -13.69 8.64 -308.95 -2.67 -16.36 16 11 C 0.51 16.79 7.18 87.66 0.63 17.42 16 12 O -0.57 -23.27 16.51 15.98 0.26 -23.00 16 13 N -0.71 -21.04 5.52 -463.07 -2.55 -23.59 16 14 C 0.13 4.09 5.67 86.38 0.49 4.58 16 15 C -0.13 -4.24 4.57 30.59 0.14 -4.10 16 16 C -0.11 -3.54 4.73 30.59 0.14 -3.39 16 17 C 0.15 5.13 3.25 45.34 0.15 5.27 16 18 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 19 C -0.12 -3.11 6.48 31.78 0.21 -2.91 16 20 C -0.12 -3.54 7.08 31.98 0.23 -3.32 16 21 C 0.09 3.89 4.69 86.86 0.41 4.30 16 22 N -0.62 -27.51 2.93 -668.26 -1.96 -29.47 16 23 C -0.20 -10.50 8.12 84.03 0.68 -9.82 16 24 H 0.08 4.40 6.90 -2.91 -0.02 4.38 16 25 C -0.04 -2.26 5.46 84.86 0.46 -1.79 16 26 N -0.96 -58.90 13.97 21.65 0.30 -58.60 16 27 Si 0.93 47.44 24.25 68.60 1.66 49.11 16 28 H -0.28 -13.67 6.54 99.48 0.65 -13.02 16 29 H -0.32 -16.85 7.11 99.48 0.71 -16.15 16 30 H -0.27 -13.50 6.44 99.48 0.64 -12.86 16 31 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.10 1.71 7.92 -2.39 -0.02 1.69 16 34 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 35 H 0.18 1.01 8.06 -2.91 -0.02 0.98 16 36 H 0.17 0.87 8.06 -2.91 -0.02 0.85 16 37 H 0.18 2.05 8.06 -2.91 -0.02 2.03 16 38 H 0.41 10.74 8.26 -92.71 -0.77 9.98 16 39 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.07 3.07 5.07 -2.39 -0.01 3.06 16 43 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 45 H 0.07 1.87 7.85 -2.39 -0.02 1.85 16 46 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 47 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 48 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 49 H 0.03 1.50 6.61 -2.39 -0.02 1.49 16 50 H 0.02 0.70 5.38 -2.38 -0.01 0.68 16 51 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -76.67 404.84 0.99 -75.68 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: 0.04 Total: 25.33 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 6.56 Total: 10.82 kcal Atomic # 7 Polarization: -121.14 SS G_CDS: -6.88 Total: -128.02 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -0.40 Total: -32.92 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 1.66 Total: 49.11 kcal Total: -76.67 0.99 -75.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492175282.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.071 kcal (2) G-P(sol) polarization free energy of solvation -76.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds