Wall clock time and date at job start Wed Apr 1 2020 05:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46757 * 2 1 4 4 O 1.42897 * 109.47037 * 240.00224 * 2 1 3 5 5 C 1.35682 * 117.00175 * 89.99952 * 4 2 1 6 6 C 1.38915 * 119.68477 * 179.72737 * 5 4 2 7 7 C 1.38381 * 119.10782 * 179.75214 * 6 5 4 8 8 C 1.38822 * 118.48647 * 0.51401 * 7 6 5 9 9 C 1.38045 * 119.29199 * 359.72232 * 8 7 6 10 10 N 1.31970 * 120.83202 * 0.02984 * 9 8 7 11 11 C 1.50696 * 109.47106 * 120.00228 * 2 1 3 12 12 O 1.21277 * 120.00143 * 119.99904 * 11 2 1 13 13 N 1.34780 * 119.99924 * 300.00018 * 11 2 1 14 14 C 1.46502 * 119.99986 * 180.02562 * 13 11 2 15 15 C 1.52991 * 109.47193 * 179.97438 * 14 13 11 16 16 C 1.52995 * 109.47244 * 180.02562 * 15 14 13 17 17 C 1.53003 * 109.47455 * 184.98110 * 16 15 14 18 18 H 1.08996 * 109.87156 * 54.31872 * 17 16 15 19 19 C 1.54321 * 110.00939 * 293.22403 * 17 16 15 20 20 C 1.55158 * 102.94223 * 218.31562 * 19 17 16 21 21 C 1.54904 * 101.58196 * 35.50093 * 20 19 17 22 22 N 1.47024 * 109.88640 * 175.33744 * 17 16 15 23 23 C 1.36936 * 125.64631 * 298.47952 * 22 17 16 24 24 H 1.08004 * 120.00034 * 347.77569 * 23 22 17 25 25 C 1.38810 * 119.99670 * 167.77710 * 23 22 17 26 26 N 1.31610 * 120.00534 * 359.97438 * 25 23 22 27 27 Si 1.86807 * 119.99775 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47104 * 0.02562 * 27 25 23 29 29 H 1.48499 * 109.47143 * 119.99942 * 27 25 23 30 30 H 1.48495 * 109.47084 * 240.00249 * 27 25 23 31 31 H 1.08991 * 109.47358 * 299.99519 * 1 2 3 32 32 H 1.08996 * 109.47047 * 60.00075 * 1 2 3 33 33 H 1.09002 * 109.47123 * 179.97438 * 1 2 3 34 34 H 1.07995 * 120.44833 * 359.97438 * 6 5 4 35 35 H 1.08000 * 120.75373 * 180.23837 * 7 6 5 36 36 H 1.08008 * 120.35677 * 179.70656 * 8 7 6 37 37 H 1.08000 * 119.58463 * 180.02562 * 9 8 7 38 38 H 0.97000 * 120.00243 * 0.02562 * 13 11 2 39 39 H 1.08998 * 109.46741 * 60.00035 * 14 13 11 40 40 H 1.09002 * 109.47059 * 300.00027 * 14 13 11 41 41 H 1.09001 * 109.47405 * 59.99847 * 15 14 13 42 42 H 1.09002 * 109.47162 * 299.99991 * 15 14 13 43 43 H 1.09001 * 109.47098 * 64.98235 * 16 15 14 44 44 H 1.09004 * 109.47371 * 304.97987 * 16 15 14 45 45 H 1.08997 * 110.72553 * 99.94954 * 19 17 16 46 46 H 1.09005 * 110.72301 * 336.67742 * 19 17 16 47 47 H 1.09000 * 111.00379 * 277.42505 * 20 19 17 48 48 H 1.09004 * 111.00601 * 153.57928 * 20 19 17 49 49 H 1.09001 * 110.36951 * 81.82975 * 21 20 19 50 50 H 1.09003 * 110.36888 * 204.04206 * 21 20 19 51 51 H 0.97000 * 120.00612 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2117 0.0830 -2.2742 6 6 2.6796 -0.5138 -3.4381 7 6 2.8799 0.2682 -4.5620 8 6 2.6139 1.6282 -4.4784 9 6 2.1556 2.1547 -3.2874 10 7 1.9695 1.3825 -2.2336 11 6 2.0323 -0.7104 1.2304 12 8 2.7296 -1.6965 1.1191 13 7 1.7067 -0.2500 2.4545 14 6 2.1955 -0.9403 3.6507 15 6 1.6860 -0.2189 4.8999 16 6 2.1969 -0.9394 6.1491 17 6 1.5877 -0.2939 7.3954 18 1 0.5012 -0.2771 7.3104 19 6 2.1234 1.1438 7.5609 20 6 2.3033 1.2730 9.0966 21 6 2.7580 -0.1579 9.4779 22 7 1.9840 -1.0481 8.5937 23 6 1.6832 -2.3598 8.8467 24 1 0.9503 -2.8723 8.2412 25 6 2.3204 -3.0307 9.8815 26 7 3.2138 -2.4063 10.6191 27 14 1.9096 -4.8200 10.2272 28 1 0.8815 -5.2871 9.2629 29 1 3.1351 -5.6461 10.0823 30 1 1.3862 -4.9492 11.6108 31 1 -0.3633 0.5137 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 2.8809 -1.5744 -3.4665 35 1 3.2392 -0.1687 -5.4820 36 1 2.7642 2.2675 -5.3358 37 1 1.9468 3.2120 -3.2172 38 1 1.1488 0.5384 2.5436 39 1 3.2855 -0.9398 3.6505 40 1 1.8326 -1.9682 3.6508 41 1 0.5960 -0.2189 4.9003 42 1 2.0493 0.8088 4.8996 43 1 3.2833 -0.8623 6.1942 44 1 1.9087 -1.9898 6.1062 45 1 1.3979 1.8703 7.1951 46 1 3.0790 1.2606 7.0495 47 1 1.3598 1.5252 9.5806 48 1 3.0732 2.0054 9.3396 49 1 3.8260 -0.2778 9.2961 50 1 2.5264 -0.3637 10.5230 51 1 3.6594 -2.8752 11.3419 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492175283.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:31 Heat of formation + Delta-G solvation = -22.032821 kcal Electronic energy + Delta-G solvation = -29484.725869 eV Core-core repulsion = 25384.923674 eV Total energy + Delta-G solvation = -4099.802195 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.15565 -39.90768 -38.14489 -37.75384 -35.51498 -33.33006 -32.90770 -32.50832 -31.82400 -30.39081 -29.36540 -28.01926 -25.47782 -24.75018 -24.19429 -23.81109 -22.93198 -21.54600 -20.51845 -20.09740 -19.13702 -18.92319 -17.85214 -16.77406 -16.71947 -16.35821 -16.12616 -15.91512 -15.49193 -15.05925 -14.95645 -14.66444 -14.31560 -14.09297 -13.81672 -13.70060 -13.56307 -13.46710 -12.85461 -12.72397 -12.40203 -12.32302 -12.14987 -12.03508 -11.89553 -11.71540 -11.49113 -11.44086 -11.01558 -10.81078 -10.71831 -10.55628 -10.38435 -10.07638 -10.03433 -9.97961 -9.88966 -9.75058 -9.58372 -9.57584 -9.17160 -8.91532 -8.55541 -6.75495 -5.70107 -3.05096 0.72934 0.83488 2.24010 2.44025 3.26007 3.36713 3.41300 3.47546 3.49428 3.83371 4.37436 4.43179 4.51777 4.53903 4.60913 4.66955 4.78126 4.79909 5.00608 5.17578 5.19984 5.28828 5.31525 5.38095 5.47221 5.52438 5.61649 5.62694 5.69023 5.74778 5.76485 5.87015 5.96764 5.98435 6.03757 6.11699 6.27693 6.35536 6.36848 6.44384 6.58934 6.72059 6.74807 6.82061 6.97470 7.19093 7.30503 7.41562 7.60019 7.65783 7.85016 8.03451 8.33329 9.24469 9.86140 10.54544 11.41510 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019661 B = 0.001666 C = 0.001581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.783547 B =16800.264988 C =17708.944973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.073 3.927 3 H 0.115 0.885 4 O -0.276 6.276 5 C 0.324 3.676 6 C -0.188 4.188 7 C -0.040 4.040 8 C -0.215 4.215 9 C 0.140 3.860 10 N -0.543 5.543 11 C 0.512 3.488 12 O -0.521 6.521 13 N -0.722 5.722 14 C 0.119 3.881 15 C -0.127 4.127 16 C -0.122 4.122 17 C 0.163 3.837 18 H 0.031 0.969 19 C -0.124 4.124 20 C -0.150 4.150 21 C 0.171 3.829 22 N -0.597 5.597 23 C -0.224 4.224 24 H 0.075 0.925 25 C -0.007 4.007 26 N -0.919 5.919 27 Si 0.908 3.092 28 H -0.279 1.279 29 H -0.291 1.291 30 H -0.291 1.291 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.137 0.863 37 H 0.160 0.840 38 H 0.400 0.600 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.065 0.935 45 H 0.055 0.945 46 H 0.061 0.939 47 H 0.056 0.944 48 H 0.055 0.945 49 H 0.021 0.979 50 H 0.074 0.926 51 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.197 12.629 -28.405 31.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.013 3.987 3 H 0.132 0.868 4 O -0.181 6.181 5 C 0.145 3.855 6 C -0.209 4.209 7 C -0.065 4.065 8 C -0.235 4.235 9 C -0.016 4.016 10 N -0.267 5.267 11 C 0.296 3.704 12 O -0.396 6.396 13 N -0.376 5.376 14 C -0.004 4.004 15 C -0.165 4.165 16 C -0.163 4.163 17 C 0.055 3.945 18 H 0.048 0.952 19 C -0.162 4.162 20 C -0.189 4.189 21 C 0.046 3.954 22 N -0.321 5.321 23 C -0.352 4.352 24 H 0.093 0.907 25 C -0.204 4.204 26 N -0.566 5.566 27 Si 0.739 3.261 28 H -0.205 1.205 29 H -0.218 1.218 30 H -0.218 1.218 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.161 0.839 35 H 0.159 0.841 36 H 0.155 0.845 37 H 0.177 0.823 38 H 0.235 0.765 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.074 0.926 46 H 0.079 0.921 47 H 0.075 0.925 48 H 0.074 0.926 49 H 0.039 0.961 50 H 0.092 0.908 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.885 11.773 -27.461 30.130 hybrid contribution -0.092 -0.772 -0.488 0.918 sum -3.978 11.001 -27.949 30.298 Atomic orbital electron populations 1.22172 0.92322 1.03812 1.03841 1.22100 0.95791 0.98025 0.82819 0.86750 1.86397 1.79785 1.34354 1.17590 1.19908 0.91090 0.87400 0.87059 1.21124 1.05932 1.02420 0.91401 1.21442 0.93993 0.93448 0.97661 1.21996 1.05266 0.96233 1.00033 1.22433 0.92592 0.99215 0.87318 1.67258 1.22083 1.04713 1.32686 1.20197 0.80903 0.84982 0.84330 1.90757 1.36809 1.25489 1.86501 1.45976 1.53881 1.32339 1.05384 1.21554 0.99605 0.96655 0.82552 1.21834 1.01053 0.99820 0.93808 1.22033 1.00781 1.00384 0.93063 1.20917 0.96024 0.90211 0.87345 0.95169 1.22590 1.00006 0.96537 0.97097 1.23016 1.00278 1.00281 0.95337 1.21449 0.93752 0.83848 0.96348 1.44562 1.62945 1.08601 1.15988 1.19027 1.17253 0.85534 1.13433 0.90686 1.24860 0.98137 0.98083 0.99299 1.69941 1.29459 1.35208 1.22027 0.86098 0.77455 0.84868 0.77690 1.20466 1.21757 1.21821 0.90199 0.90803 0.91106 0.83874 0.84063 0.84494 0.82280 0.76529 0.91326 0.91170 0.91646 0.91642 0.92205 0.91603 0.92649 0.92067 0.92498 0.92589 0.96090 0.90792 0.93820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 9.43 37.16 0.35 -0.95 16 2 C 0.07 0.76 2.91 -27.88 -0.08 0.68 16 3 H 0.11 1.08 6.98 -51.93 -0.36 0.72 16 4 O -0.28 -3.43 9.29 -38.66 -0.36 -3.79 16 5 C 0.32 3.43 7.45 -17.12 -0.13 3.31 16 6 C -0.19 -1.60 10.04 -39.28 -0.39 -2.00 16 7 C -0.04 -0.24 10.17 -39.31 -0.40 -0.64 16 8 C -0.21 -1.17 10.10 -39.44 -0.40 -1.57 16 9 C 0.14 0.93 11.18 -17.56 -0.20 0.74 16 10 N -0.54 -5.12 8.65 -13.33 -0.12 -5.24 16 11 C 0.51 6.69 7.23 -10.99 -0.08 6.61 16 12 O -0.52 -9.26 16.50 -14.35 -0.24 -9.50 16 13 N -0.72 -7.81 5.45 -60.30 -0.33 -8.13 16 14 C 0.12 1.54 5.67 -4.04 -0.02 1.52 16 15 C -0.13 -1.61 5.10 -26.74 -0.14 -1.74 16 16 C -0.12 -2.14 4.71 -26.73 -0.13 -2.27 16 17 C 0.16 3.21 3.16 -66.95 -0.21 3.00 16 18 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 19 C -0.12 -2.09 5.69 -24.90 -0.14 -2.24 16 20 C -0.15 -2.83 7.08 -24.58 -0.17 -3.00 16 21 C 0.17 4.15 5.45 -2.53 -0.01 4.13 16 22 N -0.60 -14.95 3.13 -162.58 -0.51 -15.46 16 23 C -0.22 -6.17 9.73 -15.06 -0.15 -6.31 16 24 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 25 C -0.01 -0.21 5.47 -17.44 -0.10 -0.30 16 26 N -0.92 -27.07 10.48 55.49 0.58 -26.49 16 27 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 28 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 29 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 30 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 31 H 0.08 0.46 7.56 -51.93 -0.39 0.07 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.14 0.45 8.06 -52.49 -0.42 0.02 16 36 H 0.14 0.38 8.06 -52.48 -0.42 -0.05 16 37 H 0.16 0.60 8.06 -52.49 -0.42 0.18 16 38 H 0.40 3.02 7.89 -40.82 -0.32 2.70 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.75 7.63 -51.93 -0.40 0.35 16 43 H 0.06 1.12 8.04 -51.93 -0.42 0.70 16 44 H 0.07 1.28 7.85 -51.93 -0.41 0.87 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.06 0.99 7.78 -51.93 -0.40 0.58 16 47 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 49 H 0.02 0.55 8.11 -51.93 -0.42 0.13 16 50 H 0.07 2.01 6.75 -51.93 -0.35 1.66 16 51 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 415.21 15.07 6.26 6.26 Total: -1.00 -34.74 415.21 -10.65 -45.39 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -8.52 Total: 0.75 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -2.40 Total: -1.03 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: -0.37 Total: -55.33 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -0.60 Total: -13.28 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.74 -10.65 -45.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492175283.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.357 kcal (2) G-P(sol) polarization free energy of solvation -34.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds