Wall clock time and date at job start Wed Apr 1 2020 05:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46757 * 2 1 4 4 O 1.42897 * 109.47037 * 240.00224 * 2 1 3 5 5 C 1.35682 * 117.00175 * 89.99952 * 4 2 1 6 6 C 1.38915 * 119.68477 * 179.72737 * 5 4 2 7 7 C 1.38381 * 119.10782 * 179.75214 * 6 5 4 8 8 C 1.38822 * 118.48647 * 0.51401 * 7 6 5 9 9 C 1.38045 * 119.29199 * 359.72232 * 8 7 6 10 10 N 1.31970 * 120.83202 * 0.02984 * 9 8 7 11 11 C 1.50696 * 109.47106 * 120.00228 * 2 1 3 12 12 O 1.21277 * 120.00143 * 119.99904 * 11 2 1 13 13 N 1.34780 * 119.99924 * 300.00018 * 11 2 1 14 14 C 1.46502 * 119.99986 * 180.02562 * 13 11 2 15 15 C 1.52991 * 109.47193 * 179.97438 * 14 13 11 16 16 C 1.52995 * 109.47244 * 180.02562 * 15 14 13 17 17 C 1.53003 * 109.47455 * 184.98110 * 16 15 14 18 18 H 1.08996 * 109.87156 * 54.31872 * 17 16 15 19 19 C 1.54321 * 110.00939 * 293.22403 * 17 16 15 20 20 C 1.55158 * 102.94223 * 218.31562 * 19 17 16 21 21 C 1.54904 * 101.58196 * 35.50093 * 20 19 17 22 22 N 1.47024 * 109.88640 * 175.33744 * 17 16 15 23 23 C 1.36936 * 125.64631 * 298.47952 * 22 17 16 24 24 H 1.08004 * 120.00034 * 347.77569 * 23 22 17 25 25 C 1.38810 * 119.99670 * 167.77710 * 23 22 17 26 26 N 1.31610 * 120.00534 * 359.97438 * 25 23 22 27 27 Si 1.86807 * 119.99775 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47104 * 0.02562 * 27 25 23 29 29 H 1.48499 * 109.47143 * 119.99942 * 27 25 23 30 30 H 1.48495 * 109.47084 * 240.00249 * 27 25 23 31 31 H 1.08991 * 109.47358 * 299.99519 * 1 2 3 32 32 H 1.08996 * 109.47047 * 60.00075 * 1 2 3 33 33 H 1.09002 * 109.47123 * 179.97438 * 1 2 3 34 34 H 1.07995 * 120.44833 * 359.97438 * 6 5 4 35 35 H 1.08000 * 120.75373 * 180.23837 * 7 6 5 36 36 H 1.08008 * 120.35677 * 179.70656 * 8 7 6 37 37 H 1.08000 * 119.58463 * 180.02562 * 9 8 7 38 38 H 0.97000 * 120.00243 * 0.02562 * 13 11 2 39 39 H 1.08998 * 109.46741 * 60.00035 * 14 13 11 40 40 H 1.09002 * 109.47059 * 300.00027 * 14 13 11 41 41 H 1.09001 * 109.47405 * 59.99847 * 15 14 13 42 42 H 1.09002 * 109.47162 * 299.99991 * 15 14 13 43 43 H 1.09001 * 109.47098 * 64.98235 * 16 15 14 44 44 H 1.09004 * 109.47371 * 304.97987 * 16 15 14 45 45 H 1.08997 * 110.72553 * 99.94954 * 19 17 16 46 46 H 1.09005 * 110.72301 * 336.67742 * 19 17 16 47 47 H 1.09000 * 111.00379 * 277.42505 * 20 19 17 48 48 H 1.09004 * 111.00601 * 153.57928 * 20 19 17 49 49 H 1.09001 * 110.36951 * 81.82975 * 21 20 19 50 50 H 1.09003 * 110.36888 * 204.04206 * 21 20 19 51 51 H 0.97000 * 120.00612 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2117 0.0830 -2.2742 6 6 2.6796 -0.5138 -3.4381 7 6 2.8799 0.2682 -4.5620 8 6 2.6139 1.6282 -4.4784 9 6 2.1556 2.1547 -3.2874 10 7 1.9695 1.3825 -2.2336 11 6 2.0323 -0.7104 1.2304 12 8 2.7296 -1.6965 1.1191 13 7 1.7067 -0.2500 2.4545 14 6 2.1955 -0.9403 3.6507 15 6 1.6860 -0.2189 4.8999 16 6 2.1969 -0.9394 6.1491 17 6 1.5877 -0.2939 7.3954 18 1 0.5012 -0.2771 7.3104 19 6 2.1234 1.1438 7.5609 20 6 2.3033 1.2730 9.0966 21 6 2.7580 -0.1579 9.4779 22 7 1.9840 -1.0481 8.5937 23 6 1.6832 -2.3598 8.8467 24 1 0.9503 -2.8723 8.2412 25 6 2.3204 -3.0307 9.8815 26 7 3.2138 -2.4063 10.6191 27 14 1.9096 -4.8200 10.2272 28 1 0.8815 -5.2871 9.2629 29 1 3.1351 -5.6461 10.0823 30 1 1.3862 -4.9492 11.6108 31 1 -0.3633 0.5137 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 2.8809 -1.5744 -3.4665 35 1 3.2392 -0.1687 -5.4820 36 1 2.7642 2.2675 -5.3358 37 1 1.9468 3.2120 -3.2172 38 1 1.1488 0.5384 2.5436 39 1 3.2855 -0.9398 3.6505 40 1 1.8326 -1.9682 3.6508 41 1 0.5960 -0.2189 4.9003 42 1 2.0493 0.8088 4.8996 43 1 3.2833 -0.8623 6.1942 44 1 1.9087 -1.9898 6.1062 45 1 1.3979 1.8703 7.1951 46 1 3.0790 1.2606 7.0495 47 1 1.3598 1.5252 9.5806 48 1 3.0732 2.0054 9.3396 49 1 3.8260 -0.2778 9.2961 50 1 2.5264 -0.3637 10.5230 51 1 3.6594 -2.8752 11.3419 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001492175283.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:30 Heat of formation + Delta-G solvation = -44.989709 kcal Electronic energy + Delta-G solvation = -29485.721354 eV Core-core repulsion = 25384.923674 eV Total energy + Delta-G solvation = -4100.797680 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.84618 -40.80923 -39.48939 -38.79643 -36.72473 -34.77645 -34.03650 -33.44060 -32.84402 -31.25010 -30.97294 -29.40543 -26.72900 -26.22981 -25.34259 -24.48348 -23.72235 -22.72700 -21.85781 -21.51951 -20.69578 -19.60541 -18.80680 -18.56516 -17.50908 -17.13278 -16.96187 -16.86181 -16.74638 -16.42373 -16.08681 -15.68922 -15.65235 -15.41736 -15.04844 -14.51792 -14.43422 -14.16466 -14.00149 -13.87569 -13.68926 -13.57127 -13.41621 -13.13113 -13.01510 -12.92366 -12.79348 -12.76837 -12.66001 -12.26265 -12.20362 -11.96232 -11.83287 -11.67539 -11.51532 -11.30532 -11.15902 -10.95773 -10.86957 -10.66364 -10.59991 -10.22389 -9.50386 -8.78563 -7.84118 -5.19553 0.19917 0.31710 1.38611 1.43366 1.44709 1.48866 1.54287 2.43282 2.49992 2.82349 3.27533 3.33490 3.52602 3.71163 3.84386 3.94086 3.97171 4.01573 4.05441 4.12003 4.17201 4.22814 4.26257 4.35878 4.37251 4.43442 4.62480 4.65627 4.67906 4.77875 4.80666 4.83146 4.85525 4.99462 5.04714 5.06547 5.08673 5.14160 5.24702 5.29512 5.29944 5.36729 5.51676 5.52338 5.53540 5.69836 5.71734 5.81758 6.16103 6.28596 6.43349 6.84447 7.09320 7.13657 7.83729 8.49921 9.26695 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019661 B = 0.001666 C = 0.001581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.783547 B =16800.264988 C =17708.944973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.079 3.921 3 H 0.126 0.874 4 O -0.306 6.306 5 C 0.293 3.707 6 C -0.208 4.208 7 C -0.037 4.037 8 C -0.205 4.205 9 C 0.128 3.872 10 N -0.558 5.558 11 C 0.509 3.491 12 O -0.577 6.577 13 N -0.703 5.703 14 C 0.125 3.875 15 C -0.107 4.107 16 C -0.114 4.114 17 C 0.152 3.848 18 H 0.037 0.963 19 C -0.111 4.111 20 C -0.137 4.137 21 C 0.172 3.828 22 N -0.620 5.620 23 C -0.227 4.227 24 H 0.077 0.923 25 C -0.068 4.068 26 N -0.950 5.950 27 Si 0.970 3.030 28 H -0.266 1.266 29 H -0.296 1.296 30 H -0.292 1.292 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.058 0.942 34 H 0.140 0.860 35 H 0.171 0.829 36 H 0.171 0.829 37 H 0.189 0.811 38 H 0.421 0.579 39 H 0.052 0.948 40 H 0.050 0.950 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.041 0.959 44 H 0.036 0.964 45 H 0.098 0.902 46 H 0.070 0.930 47 H 0.064 0.936 48 H 0.080 0.920 49 H -0.012 1.012 50 H 0.034 0.966 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.757 15.614 -31.172 35.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.019 3.981 3 H 0.143 0.857 4 O -0.213 6.213 5 C 0.115 3.885 6 C -0.229 4.229 7 C -0.063 4.063 8 C -0.224 4.224 9 C -0.027 4.027 10 N -0.282 5.282 11 C 0.295 3.705 12 O -0.456 6.456 13 N -0.357 5.357 14 C 0.001 3.999 15 C -0.145 4.145 16 C -0.154 4.154 17 C 0.046 3.954 18 H 0.055 0.945 19 C -0.149 4.149 20 C -0.176 4.176 21 C 0.047 3.953 22 N -0.344 5.344 23 C -0.357 4.357 24 H 0.095 0.905 25 C -0.261 4.261 26 N -0.600 5.600 27 Si 0.799 3.201 28 H -0.191 1.191 29 H -0.224 1.224 30 H -0.219 1.219 31 H 0.125 0.875 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.158 0.842 35 H 0.189 0.811 36 H 0.189 0.811 37 H 0.206 0.794 38 H 0.259 0.741 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.104 0.896 42 H 0.111 0.889 43 H 0.059 0.941 44 H 0.055 0.945 45 H 0.117 0.883 46 H 0.089 0.911 47 H 0.082 0.918 48 H 0.098 0.902 49 H 0.006 0.994 50 H 0.053 0.947 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.497 14.819 -30.262 34.141 hybrid contribution 0.401 -1.629 0.266 1.698 sum -5.096 13.191 -29.995 33.161 Atomic orbital electron populations 1.22158 0.90310 1.03498 1.05363 1.22125 0.97101 0.97595 0.81263 0.85650 1.86347 1.80647 1.35809 1.18541 1.20148 0.93118 0.88151 0.87053 1.21347 1.06688 1.02857 0.91961 1.21852 0.92922 0.93747 0.97754 1.22421 1.03139 0.96280 1.00588 1.23056 0.92149 1.00329 0.87180 1.67224 1.22617 1.04334 1.34051 1.20792 0.79891 0.84285 0.85543 1.90728 1.39424 1.28091 1.87327 1.45735 1.53343 1.32473 1.04128 1.21315 0.98707 0.96153 0.83710 1.21634 1.02054 1.00153 0.90660 1.21834 0.99554 0.99237 0.94759 1.21226 0.96484 0.91688 0.86020 0.94485 1.22591 1.01620 0.95153 0.95512 1.22884 1.01135 0.96617 0.96960 1.21251 0.92082 0.87583 0.94403 1.44880 1.62773 1.08308 1.18444 1.19354 1.16604 0.86989 1.12714 0.90499 1.25633 0.98798 1.01881 0.99803 1.70155 1.30866 1.36357 1.22619 0.85127 0.77103 0.80395 0.77490 1.19071 1.22353 1.21861 0.87535 0.90314 0.92304 0.84168 0.81134 0.81141 0.79436 0.74115 0.92908 0.93106 0.89635 0.88915 0.94057 0.94472 0.88323 0.91102 0.91763 0.90171 0.99398 0.94743 0.94582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.43 71.98 0.68 -1.58 16 2 C 0.08 1.62 2.91 29.85 0.09 1.70 16 3 H 0.13 2.23 6.98 -2.39 -0.02 2.21 16 4 O -0.31 -7.90 9.29 -70.96 -0.66 -8.56 16 5 C 0.29 6.23 7.45 84.79 0.63 6.86 16 6 C -0.21 -3.52 10.04 22.47 0.23 -3.29 16 7 C -0.04 -0.37 10.17 22.44 0.23 -0.14 16 8 C -0.20 -1.59 10.10 22.36 0.23 -1.36 16 9 C 0.13 1.39 11.18 84.63 0.95 2.34 16 10 N -0.56 -9.85 8.65 -308.95 -2.67 -12.52 16 11 C 0.51 13.30 7.23 87.66 0.63 13.93 16 12 O -0.58 -21.42 16.50 16.02 0.26 -21.16 16 13 N -0.70 -14.08 5.45 -463.07 -2.52 -16.60 16 14 C 0.12 3.15 5.67 86.38 0.49 3.64 16 15 C -0.11 -2.42 5.10 30.59 0.16 -2.27 16 16 C -0.11 -3.91 4.71 30.59 0.14 -3.76 16 17 C 0.15 5.75 3.16 45.34 0.14 5.90 16 18 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 19 C -0.11 -3.34 5.69 31.78 0.18 -3.16 16 20 C -0.14 -4.88 7.08 31.98 0.23 -4.66 16 21 C 0.17 8.56 5.45 86.85 0.47 9.03 16 22 N -0.62 -31.47 3.13 -668.27 -2.09 -33.56 16 23 C -0.23 -12.79 9.73 84.03 0.82 -11.98 16 24 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 25 C -0.07 -3.98 5.47 84.86 0.46 -3.51 16 26 N -0.95 -58.48 10.48 21.65 0.23 -58.26 16 27 Si 0.97 47.10 29.55 68.60 2.03 49.13 16 28 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 29 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 30 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 31 H 0.11 0.91 7.56 -2.39 -0.02 0.89 16 32 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 35 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 36 H 0.17 0.15 8.06 -2.91 -0.02 0.13 16 37 H 0.19 0.77 8.06 -2.91 -0.02 0.75 16 38 H 0.42 4.95 7.89 -92.71 -0.73 4.22 16 39 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.09 1.68 7.63 -2.39 -0.02 1.66 16 43 H 0.04 1.55 8.04 -2.39 -0.02 1.53 16 44 H 0.04 1.47 7.85 -2.39 -0.02 1.45 16 45 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 46 H 0.07 2.03 7.78 -2.38 -0.02 2.01 16 47 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 48 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 49 H -0.01 -0.66 8.11 -2.39 -0.02 -0.68 16 50 H 0.03 1.95 6.75 -2.39 -0.02 1.93 16 51 H 0.24 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -82.19 415.21 1.51 -80.68 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 0.18 Total: 13.16 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 6.75 Total: 7.69 kcal Atomic # 7 Polarization: -113.88 SS G_CDS: -7.06 Total: -120.94 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -0.40 Total: -29.72 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -82.19 1.51 -80.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492175283.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.694 kcal (2) G-P(sol) polarization free energy of solvation -82.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds