Wall clock time and date at job start Wed Apr 1 2020 05:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47145 * 2 1 4 4 O 1.42902 * 109.47218 * 240.00108 * 2 1 3 5 5 C 1.42900 * 114.00219 * 90.00184 * 4 2 1 6 6 C 1.50691 * 109.47216 * 179.97438 * 5 4 2 7 7 C 1.38649 * 120.79179 * 269.71753 * 6 5 4 8 8 C 1.38208 * 119.16291 * 179.75901 * 7 6 5 9 9 N 1.31877 * 120.76311 * 0.52779 * 8 7 6 10 10 C 1.31871 * 121.72368 * 359.74316 * 9 8 7 11 11 C 1.38199 * 120.76592 * 359.97438 * 10 9 8 12 12 C 1.50706 * 109.47213 * 120.00240 * 2 1 3 13 13 O 1.21274 * 120.00042 * 114.72332 * 12 2 1 14 14 N 1.34777 * 119.99766 * 294.99868 * 12 2 1 15 15 C 1.46496 * 120.00266 * 179.97438 * 14 12 2 16 16 H 1.09002 * 109.46997 * 325.00809 * 15 14 12 17 17 C 1.52998 * 109.46844 * 85.00291 * 15 14 12 18 18 C 1.53006 * 109.47045 * 180.02562 * 17 15 14 19 19 C 1.53002 * 109.46876 * 299.99518 * 18 17 15 20 20 H 1.08994 * 109.47420 * 300.00386 * 19 18 17 21 21 N 1.46496 * 109.47001 * 179.97438 * 19 18 17 22 22 C 1.36944 * 119.99832 * 85.00382 * 21 19 18 23 23 H 1.07997 * 119.99859 * 0.02562 * 22 21 19 24 24 C 1.38805 * 119.99989 * 179.97438 * 22 21 19 25 25 N 1.31619 * 120.00248 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99997 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47080 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.47063 * 120.00291 * 26 24 22 29 29 H 1.48497 * 109.47372 * 240.00152 * 26 24 22 30 30 C 1.52998 * 109.46890 * 60.00387 * 19 18 17 31 31 C 1.52998 * 109.47415 * 205.00509 * 15 14 12 32 32 H 1.09002 * 109.46922 * 60.00398 * 1 2 3 33 33 H 1.09006 * 109.46822 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47474 * 299.99800 * 1 2 3 35 35 H 1.09002 * 109.46791 * 299.99931 * 5 4 2 36 36 H 1.08998 * 109.47156 * 59.99395 * 5 4 2 37 37 H 1.07995 * 120.41610 * 359.97438 * 7 6 5 38 38 H 1.07997 * 119.62182 * 180.29434 * 8 7 6 39 39 H 1.08002 * 119.61730 * 179.97438 * 10 9 8 40 40 H 1.08004 * 120.41924 * 179.97438 * 11 10 9 41 41 H 0.96999 * 120.00043 * 0.02562 * 14 12 2 42 42 H 1.09001 * 109.47093 * 300.00142 * 17 15 14 43 43 H 1.09000 * 109.47516 * 60.00038 * 17 15 14 44 44 H 1.09003 * 109.46589 * 180.02562 * 18 17 15 45 45 H 1.08994 * 109.47411 * 59.99910 * 18 17 15 46 46 H 0.96998 * 120.00494 * 265.00631 * 21 19 18 47 47 H 0.97000 * 120.00230 * 180.02562 * 25 24 22 48 48 H 1.08997 * 109.47657 * 179.97438 * 30 19 18 49 49 H 1.09007 * 109.47327 * 59.99649 * 30 19 18 50 50 H 1.09007 * 109.46959 * 299.99801 * 31 15 14 51 51 H 1.08997 * 109.47162 * 59.99875 * 31 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2001 0.1829 -2.2941 6 6 2.7015 -0.6282 -3.4609 7 6 4.0605 -0.8064 -3.6697 8 6 4.4830 -1.5609 -4.7478 9 7 3.6108 -2.0989 -5.5779 10 6 2.3114 -1.9457 -5.4134 11 6 1.8148 -1.2092 -4.3547 12 6 2.0323 -0.7105 1.2305 13 8 2.6486 -1.7493 1.1217 14 7 1.7919 -0.1942 2.4520 15 6 2.2797 -0.8851 3.6482 16 1 2.2323 -1.9626 3.4902 17 6 3.7278 -0.4728 3.9203 18 6 4.2375 -1.1948 5.1693 19 6 3.3657 -0.8166 6.3684 20 1 3.4131 0.2607 6.5267 21 7 3.8534 -1.5084 7.5641 22 6 4.8725 -0.9662 8.3010 23 1 5.3163 -0.0286 8.0008 24 6 5.3342 -1.6214 9.4342 25 7 4.7929 -2.7639 9.8004 26 14 6.7248 -0.8823 10.4389 27 1 7.1568 0.3967 9.8204 28 1 6.2536 -0.6275 11.8240 29 1 7.8690 -1.8282 10.4716 30 6 1.9177 -1.2289 6.0963 31 6 1.4078 -0.5065 4.8471 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8900 35 1 1.2538 0.6547 -2.5589 36 1 2.9319 0.9514 -2.0450 37 1 4.7798 -0.3642 -2.9963 38 1 5.5398 -1.7086 -4.9147 39 1 1.6273 -2.4011 -6.1142 40 1 0.7495 -1.0870 -4.2255 41 1 1.2952 0.6344 2.5392 42 1 4.3489 -0.7426 3.0662 43 1 3.7753 0.6046 4.0782 44 1 5.2690 -0.9007 5.3633 45 1 4.1901 -2.2722 5.0110 46 1 3.4545 -2.3503 7.8340 47 1 5.1153 -3.2215 10.5926 48 1 1.2966 -0.9599 6.9507 49 1 1.8702 -2.3063 5.9380 50 1 1.4553 0.5710 5.0051 51 1 0.3762 -0.8002 4.6532 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495470937.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:27 Heat of formation + Delta-G solvation = -48.403812 kcal Electronic energy + Delta-G solvation = -29653.690989 eV Core-core repulsion = 25552.745263 eV Total energy + Delta-G solvation = -4100.945727 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.64696 -40.23346 -38.58487 -37.53778 -34.88225 -33.91879 -33.13215 -31.65499 -31.60131 -30.44385 -30.35705 -27.40031 -27.34283 -24.67636 -23.86607 -23.42735 -22.44463 -22.34084 -21.16029 -20.47453 -19.47214 -17.90972 -17.53969 -17.02524 -16.92572 -16.71099 -16.02752 -15.98506 -15.57377 -15.21982 -14.76167 -14.50935 -14.18260 -14.10462 -13.96219 -13.77411 -13.60601 -13.55015 -13.18252 -13.04781 -12.80425 -12.55356 -12.43916 -12.04879 -11.98619 -11.83044 -11.71483 -11.43593 -11.05161 -10.83491 -10.77462 -10.67181 -10.39734 -10.17207 -10.15628 -10.11484 -9.88182 -9.76769 -9.71657 -9.54046 -9.52729 -9.01146 -8.85212 -6.93511 -5.75199 -3.03689 0.71203 0.75162 2.48467 2.61993 3.33373 3.43636 3.49139 3.51465 3.66497 4.08343 4.19527 4.23293 4.39114 4.48401 4.58749 4.59960 4.61761 4.71159 4.82765 4.87953 4.89362 5.02757 5.10203 5.20380 5.22830 5.26343 5.38217 5.51760 5.53330 5.59308 5.63284 5.67308 5.71840 5.83716 5.86452 5.87563 6.01402 6.22185 6.24515 6.28291 6.28772 6.45665 6.52500 6.57462 6.65950 6.72653 6.98754 7.15234 7.39088 7.57432 7.71765 8.12396 8.43660 9.54654 10.13398 10.47769 11.47612 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019071 B = 0.001689 C = 0.001598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.837803 B =16578.402837 C =17515.779353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.070 3.930 3 H 0.087 0.913 4 O -0.348 6.348 5 C 0.098 3.902 6 C -0.045 4.045 7 C -0.149 4.149 8 C 0.097 3.903 9 N -0.482 5.482 10 C 0.095 3.905 11 C -0.152 4.152 12 C 0.512 3.488 13 O -0.515 6.515 14 N -0.723 5.723 15 C 0.146 3.854 16 H 0.088 0.912 17 C -0.123 4.123 18 C -0.132 4.132 19 C 0.177 3.823 20 H 0.046 0.954 21 N -0.726 5.726 22 C -0.236 4.236 23 H 0.070 0.930 24 C -0.015 4.015 25 N -0.933 5.933 26 Si 0.905 3.095 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 C -0.121 4.121 31 C -0.118 4.118 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.137 0.863 38 H 0.158 0.842 39 H 0.157 0.843 40 H 0.136 0.864 41 H 0.397 0.603 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.063 0.937 45 H 0.057 0.943 46 H 0.383 0.617 47 H 0.254 0.746 48 H 0.068 0.932 49 H 0.062 0.938 50 H 0.066 0.934 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.561 10.206 -28.580 32.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.008 3.992 3 H 0.105 0.895 4 O -0.266 6.266 5 C 0.022 3.978 6 C -0.053 4.053 7 C -0.169 4.169 8 C -0.060 4.060 9 N -0.192 5.192 10 C -0.062 4.062 11 C -0.172 4.172 12 C 0.296 3.704 13 O -0.388 6.388 14 N -0.376 5.376 15 C 0.043 3.957 16 H 0.106 0.894 17 C -0.163 4.163 18 C -0.173 4.173 19 C 0.067 3.933 20 H 0.064 0.936 21 N -0.366 5.366 22 C -0.368 4.368 23 H 0.088 0.912 24 C -0.211 4.211 25 N -0.581 5.581 26 Si 0.736 3.264 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 C -0.160 4.160 31 C -0.156 4.156 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.155 0.845 38 H 0.176 0.824 39 H 0.175 0.825 40 H 0.154 0.846 41 H 0.230 0.770 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.075 0.925 46 H 0.217 0.783 47 H 0.064 0.936 48 H 0.087 0.913 49 H 0.081 0.919 50 H 0.084 0.916 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.627 8.847 -29.279 32.380 hybrid contribution 0.120 1.250 1.470 1.933 sum -10.507 10.097 -27.809 31.396 Atomic orbital electron populations 1.22237 0.93374 1.04059 1.03152 1.21954 0.95192 0.96341 0.85664 0.89526 1.88146 1.86576 1.33458 1.18421 1.21419 1.00103 0.91661 0.84630 1.19945 0.93716 0.96896 0.94733 1.22129 0.95867 0.99804 0.99056 1.22812 0.99806 0.92908 0.90426 1.67682 1.03399 1.19515 1.28575 1.22786 0.91998 0.95323 0.96067 1.22076 1.00959 0.98307 0.95828 1.20269 0.80141 0.85780 0.84249 1.90758 1.39071 1.22777 1.86243 1.46093 1.58007 1.27816 1.05658 1.21129 0.94026 0.97862 0.82693 0.89406 1.21898 0.94929 1.00402 0.99056 1.22231 1.00998 0.99960 0.94156 1.20236 0.90077 0.95946 0.87002 0.93615 1.42438 1.41662 1.26010 1.26473 1.19287 1.09458 1.03783 1.04250 0.91178 1.24740 1.00133 0.97326 0.98884 1.69671 1.44510 1.16860 1.27101 0.86142 0.81961 0.78128 0.80119 1.20608 1.21927 1.21913 1.21766 0.98033 1.00236 0.95932 1.21755 0.98410 1.01078 0.94406 0.91267 0.90899 0.90690 0.91676 0.91676 0.84480 0.82428 0.82535 0.84615 0.76963 0.92420 0.92314 0.91791 0.92464 0.78301 0.93603 0.91329 0.91942 0.91554 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.98 9.48 37.16 0.35 -0.63 16 2 C 0.07 0.57 3.13 -27.88 -0.09 0.49 16 3 H 0.09 0.47 7.79 -51.93 -0.40 0.06 16 4 O -0.35 -3.64 9.51 -55.09 -0.52 -4.16 16 5 C 0.10 0.68 5.92 36.00 0.21 0.90 16 6 C -0.04 -0.37 5.55 -104.32 -0.58 -0.95 16 7 C -0.15 -1.22 9.82 -39.44 -0.39 -1.61 16 8 C 0.10 0.83 11.18 -17.54 -0.20 0.63 16 9 N -0.48 -4.75 10.36 -13.25 -0.14 -4.89 16 10 C 0.10 0.76 11.18 -17.55 -0.20 0.56 16 11 C -0.15 -1.12 9.82 -39.44 -0.39 -1.51 16 12 C 0.51 6.14 7.14 -10.98 -0.08 6.07 16 13 O -0.51 -8.91 16.17 -14.29 -0.23 -9.15 16 14 N -0.72 -7.21 5.04 -53.81 -0.27 -7.48 16 15 C 0.15 1.87 2.46 -67.93 -0.17 1.71 16 16 H 0.09 1.34 7.57 -51.93 -0.39 0.95 16 17 C -0.12 -1.80 5.49 -26.73 -0.15 -1.95 16 18 C -0.13 -2.40 5.50 -26.73 -0.15 -2.55 16 19 C 0.18 3.42 2.77 -67.93 -0.19 3.23 16 20 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 21 N -0.73 -18.05 5.12 -53.43 -0.27 -18.32 16 22 C -0.24 -6.54 9.93 -15.06 -0.15 -6.69 16 23 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 24 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 25 N -0.93 -28.29 13.06 55.49 0.72 -27.57 16 26 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 29 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 30 C -0.12 -1.89 5.39 -26.71 -0.14 -2.03 16 31 C -0.12 -1.39 5.39 -26.71 -0.14 -1.53 16 32 H 0.07 0.28 7.87 -51.93 -0.41 -0.13 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.30 7.92 -51.93 -0.41 -0.11 16 35 H 0.07 0.30 7.83 -51.93 -0.41 -0.11 16 36 H 0.07 0.36 8.04 -51.93 -0.42 -0.06 16 37 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 38 H 0.16 0.96 8.06 -52.49 -0.42 0.53 16 39 H 0.16 0.82 8.06 -52.49 -0.42 0.39 16 40 H 0.14 0.68 8.06 -52.48 -0.42 0.26 16 41 H 0.40 2.57 8.38 -40.82 -0.34 2.23 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.38 10.18 7.80 -40.82 -0.32 9.87 16 47 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 48 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 49 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 50 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 51 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 418.73 15.07 6.31 6.31 Total: -1.00 -36.10 418.73 -10.52 -46.62 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -8.56 Total: 7.61 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -2.53 Total: -6.39 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: 0.04 Total: -58.26 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: -0.75 Total: -13.31 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -36.10 -10.52 -46.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495470937.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.786 kcal (2) G-P(sol) polarization free energy of solvation -36.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds