Wall clock time and date at job start Wed Apr 1 2020 05:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47145 * 2 1 4 4 O 1.42902 * 109.47218 * 240.00108 * 2 1 3 5 5 C 1.42900 * 114.00219 * 90.00184 * 4 2 1 6 6 C 1.50691 * 109.47216 * 179.97438 * 5 4 2 7 7 C 1.38649 * 120.79179 * 269.71753 * 6 5 4 8 8 C 1.38208 * 119.16291 * 179.75901 * 7 6 5 9 9 N 1.31877 * 120.76311 * 0.52779 * 8 7 6 10 10 C 1.31871 * 121.72368 * 359.74316 * 9 8 7 11 11 C 1.38199 * 120.76592 * 359.97438 * 10 9 8 12 12 C 1.50706 * 109.47213 * 120.00240 * 2 1 3 13 13 O 1.21274 * 120.00042 * 114.72332 * 12 2 1 14 14 N 1.34777 * 119.99766 * 294.99868 * 12 2 1 15 15 C 1.46496 * 120.00266 * 179.97438 * 14 12 2 16 16 H 1.09002 * 109.46997 * 325.00809 * 15 14 12 17 17 C 1.52998 * 109.46844 * 85.00291 * 15 14 12 18 18 C 1.53006 * 109.47045 * 180.02562 * 17 15 14 19 19 C 1.53002 * 109.46876 * 299.99518 * 18 17 15 20 20 H 1.08994 * 109.47420 * 300.00386 * 19 18 17 21 21 N 1.46496 * 109.47001 * 179.97438 * 19 18 17 22 22 C 1.36944 * 119.99832 * 85.00382 * 21 19 18 23 23 H 1.07997 * 119.99859 * 0.02562 * 22 21 19 24 24 C 1.38805 * 119.99989 * 179.97438 * 22 21 19 25 25 N 1.31619 * 120.00248 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99997 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47080 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.47063 * 120.00291 * 26 24 22 29 29 H 1.48497 * 109.47372 * 240.00152 * 26 24 22 30 30 C 1.52998 * 109.46890 * 60.00387 * 19 18 17 31 31 C 1.52998 * 109.47415 * 205.00509 * 15 14 12 32 32 H 1.09002 * 109.46922 * 60.00398 * 1 2 3 33 33 H 1.09006 * 109.46822 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47474 * 299.99800 * 1 2 3 35 35 H 1.09002 * 109.46791 * 299.99931 * 5 4 2 36 36 H 1.08998 * 109.47156 * 59.99395 * 5 4 2 37 37 H 1.07995 * 120.41610 * 359.97438 * 7 6 5 38 38 H 1.07997 * 119.62182 * 180.29434 * 8 7 6 39 39 H 1.08002 * 119.61730 * 179.97438 * 10 9 8 40 40 H 1.08004 * 120.41924 * 179.97438 * 11 10 9 41 41 H 0.96999 * 120.00043 * 0.02562 * 14 12 2 42 42 H 1.09001 * 109.47093 * 300.00142 * 17 15 14 43 43 H 1.09000 * 109.47516 * 60.00038 * 17 15 14 44 44 H 1.09003 * 109.46589 * 180.02562 * 18 17 15 45 45 H 1.08994 * 109.47411 * 59.99910 * 18 17 15 46 46 H 0.96998 * 120.00494 * 265.00631 * 21 19 18 47 47 H 0.97000 * 120.00230 * 180.02562 * 25 24 22 48 48 H 1.08997 * 109.47657 * 179.97438 * 30 19 18 49 49 H 1.09007 * 109.47327 * 59.99649 * 30 19 18 50 50 H 1.09007 * 109.46959 * 299.99801 * 31 15 14 51 51 H 1.08997 * 109.47162 * 59.99875 * 31 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2001 0.1829 -2.2941 6 6 2.7015 -0.6282 -3.4609 7 6 4.0605 -0.8064 -3.6697 8 6 4.4830 -1.5609 -4.7478 9 7 3.6108 -2.0989 -5.5779 10 6 2.3114 -1.9457 -5.4134 11 6 1.8148 -1.2092 -4.3547 12 6 2.0323 -0.7105 1.2305 13 8 2.6486 -1.7493 1.1217 14 7 1.7919 -0.1942 2.4520 15 6 2.2797 -0.8851 3.6482 16 1 2.2323 -1.9626 3.4902 17 6 3.7278 -0.4728 3.9203 18 6 4.2375 -1.1948 5.1693 19 6 3.3657 -0.8166 6.3684 20 1 3.4131 0.2607 6.5267 21 7 3.8534 -1.5084 7.5641 22 6 4.8725 -0.9662 8.3010 23 1 5.3163 -0.0286 8.0008 24 6 5.3342 -1.6214 9.4342 25 7 4.7929 -2.7639 9.8004 26 14 6.7248 -0.8823 10.4389 27 1 7.1568 0.3967 9.8204 28 1 6.2536 -0.6275 11.8240 29 1 7.8690 -1.8282 10.4716 30 6 1.9177 -1.2289 6.0963 31 6 1.4078 -0.5065 4.8471 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8900 35 1 1.2538 0.6547 -2.5589 36 1 2.9319 0.9514 -2.0450 37 1 4.7798 -0.3642 -2.9963 38 1 5.5398 -1.7086 -4.9147 39 1 1.6273 -2.4011 -6.1142 40 1 0.7495 -1.0870 -4.2255 41 1 1.2952 0.6344 2.5392 42 1 4.3489 -0.7426 3.0662 43 1 3.7753 0.6046 4.0782 44 1 5.2690 -0.9007 5.3633 45 1 4.1901 -2.2722 5.0110 46 1 3.4545 -2.3503 7.8340 47 1 5.1153 -3.2215 10.5926 48 1 1.2966 -0.9599 6.9507 49 1 1.8702 -2.3063 5.9380 50 1 1.4553 0.5710 5.0051 51 1 0.3762 -0.8002 4.6532 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495470937.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:26 Heat of formation + Delta-G solvation = -72.855386 kcal Electronic energy + Delta-G solvation = -29654.751289 eV Core-core repulsion = 25552.745263 eV Total energy + Delta-G solvation = -4102.006027 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.34743 -41.03573 -39.60117 -38.51641 -36.35503 -34.80968 -34.36560 -32.79747 -32.16297 -31.72424 -31.66609 -28.86662 -27.87480 -25.86860 -24.90359 -24.43038 -23.61567 -22.98851 -22.42591 -21.44238 -20.82642 -19.16541 -18.53100 -18.19389 -17.52651 -17.41266 -17.02283 -16.77113 -16.54989 -16.31100 -15.94269 -15.48520 -15.36950 -15.31723 -15.02361 -14.79820 -14.66713 -14.50804 -14.23136 -14.00391 -13.62597 -13.45741 -13.33231 -13.14783 -13.08447 -12.97386 -12.85655 -12.50396 -12.43738 -12.30636 -12.23545 -12.10121 -12.02612 -11.65235 -11.46746 -11.20091 -11.06540 -10.85410 -10.76187 -10.48556 -10.46327 -10.10687 -10.03646 -8.99289 -7.93582 -5.21677 0.12673 0.18109 1.46492 1.47511 1.57187 1.59948 1.86769 2.56321 2.69443 3.09156 3.39526 3.55967 3.60453 3.74409 3.76258 3.79288 3.86255 3.90953 3.97604 4.10240 4.11461 4.19192 4.29868 4.37756 4.38915 4.40639 4.43203 4.53386 4.60072 4.65581 4.68689 4.74297 4.83537 4.86759 4.86797 4.97547 5.00933 5.12244 5.14032 5.24601 5.25924 5.28017 5.33006 5.47601 5.53749 5.55629 5.64157 5.74041 6.02521 6.29378 6.61785 6.98666 7.29509 7.34642 8.12713 8.34554 9.30350 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019071 B = 0.001689 C = 0.001598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.837803 B =16578.402837 C =17515.779353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.074 3.926 3 H 0.123 0.877 4 O -0.384 6.384 5 C 0.097 3.903 6 C -0.060 4.060 7 C -0.161 4.161 8 C 0.081 3.919 9 N -0.512 5.512 10 C 0.082 3.918 11 C -0.153 4.153 12 C 0.505 3.495 13 O -0.578 6.578 14 N -0.704 5.704 15 C 0.153 3.847 16 H 0.058 0.942 17 C -0.111 4.111 18 C -0.124 4.124 19 C 0.172 3.828 20 H 0.051 0.949 21 N -0.740 5.740 22 C -0.235 4.235 23 H 0.077 0.923 24 C -0.080 4.080 25 N -0.972 5.972 26 Si 0.970 3.030 27 H -0.265 1.265 28 H -0.293 1.293 29 H -0.298 1.298 30 C -0.115 4.115 31 C -0.103 4.103 32 H 0.092 0.908 33 H 0.050 0.950 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.146 0.854 38 H 0.172 0.828 39 H 0.179 0.821 40 H 0.161 0.839 41 H 0.420 0.580 42 H 0.043 0.957 43 H 0.081 0.919 44 H 0.040 0.960 45 H 0.034 0.966 46 H 0.371 0.629 47 H 0.249 0.751 48 H 0.068 0.932 49 H 0.049 0.951 50 H 0.092 0.908 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.428 13.459 -29.735 35.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.013 3.987 3 H 0.141 0.859 4 O -0.303 6.303 5 C 0.021 3.979 6 C -0.068 4.068 7 C -0.181 4.181 8 C -0.075 4.075 9 N -0.222 5.222 10 C -0.074 4.074 11 C -0.172 4.172 12 C 0.292 3.708 13 O -0.456 6.456 14 N -0.357 5.357 15 C 0.048 3.952 16 H 0.076 0.924 17 C -0.151 4.151 18 C -0.165 4.165 19 C 0.064 3.936 20 H 0.069 0.931 21 N -0.379 5.379 22 C -0.367 4.367 23 H 0.094 0.906 24 C -0.272 4.272 25 N -0.623 5.623 26 Si 0.800 3.200 27 H -0.189 1.189 28 H -0.220 1.220 29 H -0.225 1.225 30 C -0.153 4.153 31 C -0.142 4.142 32 H 0.111 0.889 33 H 0.069 0.931 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.097 0.903 37 H 0.164 0.836 38 H 0.189 0.811 39 H 0.196 0.804 40 H 0.178 0.822 41 H 0.258 0.742 42 H 0.062 0.938 43 H 0.099 0.901 44 H 0.059 0.941 45 H 0.053 0.947 46 H 0.202 0.798 47 H 0.058 0.942 48 H 0.087 0.913 49 H 0.068 0.932 50 H 0.111 0.889 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.530 12.188 -30.475 35.132 hybrid contribution 0.692 0.233 1.753 1.899 sum -11.837 12.421 -28.722 33.457 Atomic orbital electron populations 1.22252 0.91197 1.03343 1.05493 1.22081 0.96586 0.96899 0.83113 0.85921 1.88102 1.87060 1.35483 1.19702 1.21603 1.01951 0.91162 0.83155 1.20297 0.93839 0.97199 0.95490 1.22339 0.96583 0.99968 0.99171 1.23123 1.00570 0.93136 0.90652 1.67688 1.04471 1.20547 1.29535 1.23242 0.91839 0.95469 0.96853 1.22375 1.02177 0.97497 0.95192 1.21149 0.78857 0.85075 0.85712 1.90738 1.42018 1.25724 1.87171 1.45819 1.57374 1.28225 1.04287 1.20817 0.93259 0.96639 0.84454 0.92390 1.21758 0.95917 1.01050 0.96335 1.22042 0.99691 0.99022 0.95739 1.20501 0.92318 0.95596 0.85146 0.93105 1.42697 1.41301 1.25868 1.28025 1.19679 1.09393 1.03587 1.04005 0.90559 1.25553 1.03008 0.98070 1.00548 1.69829 1.46333 1.18465 1.27653 0.85107 0.78755 0.77744 0.78396 1.18897 1.21974 1.22510 1.21660 0.95501 1.00040 0.98140 1.21655 0.99109 1.02057 0.91348 0.88873 0.93127 0.88416 0.88783 0.90334 0.83581 0.81055 0.80397 0.82188 0.74245 0.93790 0.90084 0.94130 0.94677 0.79796 0.94185 0.91293 0.93228 0.88904 0.89170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.27 9.48 71.98 0.68 -0.58 16 2 C 0.07 0.98 3.13 29.85 0.09 1.07 16 3 H 0.12 0.73 7.79 -2.39 -0.02 0.71 16 4 O -0.38 -7.31 9.51 -130.00 -1.24 -8.55 16 5 C 0.10 1.09 5.92 71.23 0.42 1.51 16 6 C -0.06 -0.91 5.55 -19.67 -0.11 -1.02 16 7 C -0.16 -2.60 9.82 22.36 0.22 -2.38 16 8 C 0.08 1.41 11.18 84.68 0.95 2.36 16 9 N -0.51 -10.15 10.36 -195.84 -2.03 -12.18 16 10 C 0.08 1.26 11.18 84.68 0.95 2.20 16 11 C -0.15 -2.03 9.82 22.36 0.22 -1.81 16 12 C 0.51 11.29 7.14 87.66 0.63 11.92 16 13 O -0.58 -20.32 16.17 15.97 0.26 -20.06 16 14 N -0.70 -11.94 5.04 -442.55 -2.23 -14.17 16 15 C 0.15 3.67 2.46 44.99 0.11 3.78 16 16 H 0.06 1.79 7.57 -2.39 -0.02 1.77 16 17 C -0.11 -3.14 5.49 30.60 0.17 -2.97 16 18 C -0.12 -4.58 5.50 30.60 0.17 -4.41 16 19 C 0.17 6.59 2.77 44.99 0.12 6.72 16 20 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 21 N -0.74 -37.49 5.12 -322.96 -1.65 -39.14 16 22 C -0.23 -13.08 9.93 84.03 0.83 -12.24 16 23 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 24 C -0.08 -4.64 5.50 84.86 0.47 -4.18 16 25 N -0.97 -60.40 13.06 21.65 0.28 -60.12 16 26 Si 0.97 46.61 29.55 68.60 2.03 48.64 16 27 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 28 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 29 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 30 C -0.11 -3.46 5.39 30.61 0.17 -3.29 16 31 C -0.10 -2.10 5.39 30.61 0.17 -1.93 16 32 H 0.09 0.30 7.87 -2.39 -0.02 0.29 16 33 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.10 0.29 7.92 -2.39 -0.02 0.27 16 35 H 0.09 0.48 7.83 -2.39 -0.02 0.46 16 36 H 0.08 0.64 8.04 -2.39 -0.02 0.62 16 37 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 38 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 39 H 0.18 1.67 8.06 -2.91 -0.02 1.64 16 40 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 41 H 0.42 3.40 8.38 -92.71 -0.78 2.62 16 42 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.37 20.37 7.80 -92.71 -0.72 19.65 16 47 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 48 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 49 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 50 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 51 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -83.14 418.73 1.10 -82.04 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: -0.57 Total: 28.78 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: 6.25 Total: -5.25 kcal Atomic # 7 Polarization: -119.98 SS G_CDS: -5.63 Total: -125.61 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.98 Total: -28.61 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -83.14 1.10 -82.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495470937.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.186 kcal (2) G-P(sol) polarization free energy of solvation -83.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds