Wall clock time and date at job start Wed Apr 1 2020 05:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46756 * 2 1 4 4 O 1.42897 * 109.47245 * 120.00302 * 2 1 3 5 5 C 1.42903 * 113.99811 * 269.99925 * 4 2 1 6 6 C 1.50700 * 109.46385 * 180.02562 * 5 4 2 7 7 C 1.38647 * 120.79155 * 269.71385 * 6 5 4 8 8 C 1.38202 * 119.16151 * 179.80324 * 7 6 5 9 9 N 1.31864 * 120.76740 * 0.49291 * 8 7 6 10 10 C 1.31876 * 121.72512 * 359.74028 * 9 8 7 11 11 C 1.38206 * 120.76143 * 0.02562 * 10 9 8 12 12 C 1.50696 * 109.46695 * 240.00605 * 2 1 3 13 13 O 1.21287 * 119.99595 * 244.99222 * 12 2 1 14 14 N 1.34780 * 120.00373 * 65.00265 * 12 2 1 15 15 C 1.46506 * 120.00088 * 180.02562 * 14 12 2 16 16 H 1.09000 * 109.46872 * 324.99405 * 15 14 12 17 17 C 1.52997 * 109.47277 * 84.99368 * 15 14 12 18 18 C 1.52996 * 109.47165 * 180.02562 * 17 15 14 19 19 C 1.53002 * 109.46972 * 300.00293 * 18 17 15 20 20 H 1.09000 * 109.46986 * 299.99742 * 19 18 17 21 21 N 1.46496 * 109.47428 * 180.02562 * 19 18 17 22 22 C 1.36941 * 120.00340 * 84.99574 * 21 19 18 23 23 H 1.08004 * 119.99649 * 0.02562 * 22 21 19 24 24 C 1.38815 * 119.99905 * 180.02562 * 22 21 19 25 25 N 1.31613 * 119.99986 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99685 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.47350 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47491 * 119.99499 * 26 24 22 29 29 H 1.48502 * 109.47083 * 239.99522 * 26 24 22 30 30 C 1.52997 * 109.47415 * 59.99860 * 19 18 17 31 31 C 1.52999 * 109.46691 * 204.99775 * 15 14 12 32 32 H 1.08996 * 109.46756 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47054 * 299.99646 * 1 2 3 34 34 H 1.08997 * 109.47171 * 59.99790 * 1 2 3 35 35 H 1.08996 * 109.46960 * 299.99920 * 5 4 2 36 36 H 1.08998 * 109.46627 * 60.00170 * 5 4 2 37 37 H 1.08000 * 120.42059 * 0.02562 * 7 6 5 38 38 H 1.08001 * 119.61704 * 180.25593 * 8 7 6 39 39 H 1.07997 * 119.61796 * 180.02562 * 10 9 8 40 40 H 1.07993 * 120.41591 * 180.02562 * 11 10 9 41 41 H 0.97000 * 119.99750 * 359.97438 * 14 12 2 42 42 H 1.09000 * 109.47140 * 60.00200 * 17 15 14 43 43 H 1.09001 * 109.47375 * 300.00183 * 17 15 14 44 44 H 1.08992 * 109.47534 * 180.02562 * 18 17 15 45 45 H 1.08996 * 109.47134 * 59.99508 * 18 17 15 46 46 H 0.97005 * 119.99981 * 264.99973 * 21 19 18 47 47 H 0.97000 * 119.99516 * 180.02562 * 25 24 22 48 48 H 1.09001 * 109.46922 * 180.02562 * 30 19 18 49 49 H 1.09000 * 109.47140 * 59.99976 * 30 19 18 50 50 H 1.08993 * 109.47839 * 59.99891 * 31 15 14 51 51 H 1.09000 * 109.47160 * 299.99453 * 31 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2002 0.1829 2.2940 6 6 2.7016 -0.6284 3.4609 7 6 1.8152 -1.2046 4.3579 8 6 2.3117 -1.9453 5.4137 9 7 3.6110 -2.0985 5.5781 10 6 4.4832 -1.5612 4.7476 11 6 4.0605 -0.8113 3.6663 12 6 2.0323 -0.7103 -1.2305 13 8 2.6530 -1.7465 -1.1216 14 7 1.7919 -0.1939 -2.4521 15 6 2.2797 -0.8848 -3.6484 16 1 3.2397 -1.3531 -3.4314 17 6 1.2714 -1.9577 -4.0645 18 6 1.7811 -2.6795 -5.3135 19 6 1.9518 -1.6711 -6.4514 20 1 0.9919 -1.2028 -6.6688 21 7 2.4393 -2.3623 -7.6475 22 6 1.5530 -2.9710 -8.4957 23 1 0.4946 -2.9411 -8.2829 24 6 2.0151 -3.6264 -9.6287 25 7 3.3049 -3.6624 -9.8881 26 14 0.8061 -4.4561 -10.7860 27 1 -0.5755 -4.2722 -10.2735 28 1 0.9181 -3.8497 -12.1369 29 1 1.1145 -5.9065 -10.8674 30 6 2.9601 -0.5983 -6.0353 31 6 2.4499 0.1240 -4.7860 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8899 35 1 2.9320 0.9512 2.0450 36 1 1.2539 0.6545 2.5588 37 1 0.7500 -1.0791 4.2311 38 1 1.6277 -2.4008 6.1144 39 1 5.5400 -1.7088 4.9144 40 1 4.7796 -0.3742 2.9895 41 1 1.2952 0.6347 -2.5391 42 1 0.3113 -1.4894 -4.2815 43 1 1.1501 -2.6763 -3.2540 44 1 1.0627 -3.4435 -5.6102 45 1 2.7411 -3.1478 -5.0961 46 1 3.3899 -2.3889 -7.8387 47 1 3.6277 -4.1201 -10.6801 48 1 3.0812 0.1204 -6.8458 49 1 3.9200 -1.0666 -5.8178 50 1 3.1681 0.8883 -4.4896 51 1 1.4898 0.5923 -5.0030 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495470938.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:31 Heat of formation + Delta-G solvation = -48.361589 kcal Electronic energy + Delta-G solvation = -29641.256801 eV Core-core repulsion = 25540.312905 eV Total energy + Delta-G solvation = -4100.943896 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.65229 -40.23410 -38.58452 -37.53700 -34.88022 -33.92082 -33.13061 -31.64911 -31.60697 -30.43217 -30.36960 -27.40042 -27.34638 -24.66202 -23.87312 -23.41891 -22.43873 -22.36745 -21.17072 -20.43718 -19.49252 -17.90546 -17.55645 -17.03005 -16.92702 -16.71113 -16.02054 -15.94409 -15.59876 -15.19581 -14.82173 -14.53329 -14.20281 -14.05187 -13.95560 -13.77151 -13.60791 -13.49999 -13.23288 -13.04300 -12.75890 -12.59792 -12.41720 -12.04992 -11.97059 -11.82042 -11.73211 -11.43049 -11.05502 -10.83449 -10.77018 -10.66783 -10.39897 -10.17638 -10.15386 -10.11284 -9.88779 -9.76340 -9.71575 -9.54536 -9.52751 -9.01061 -8.84998 -6.93315 -5.75075 -3.03448 0.70638 0.74499 2.47855 2.62412 3.33044 3.43865 3.49449 3.51693 3.66197 4.07757 4.18944 4.22580 4.39280 4.48513 4.58451 4.60148 4.61722 4.70702 4.82184 4.88029 4.88565 5.02890 5.11818 5.20106 5.23862 5.26338 5.37493 5.52003 5.52723 5.59842 5.65717 5.67640 5.71869 5.83831 5.86789 5.86898 6.01843 6.22174 6.24576 6.27648 6.28983 6.46333 6.52672 6.57398 6.66146 6.73125 6.99126 7.15619 7.39064 7.56852 7.72048 8.12356 8.43834 9.54843 10.13584 10.47964 11.47772 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022428 B = 0.001618 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.150888 B =17298.239713 C =17553.612507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.070 3.930 3 H 0.087 0.913 4 O -0.348 6.348 5 C 0.098 3.902 6 C -0.045 4.045 7 C -0.152 4.152 8 C 0.095 3.905 9 N -0.482 5.482 10 C 0.097 3.903 11 C -0.149 4.149 12 C 0.511 3.489 13 O -0.515 6.515 14 N -0.723 5.723 15 C 0.146 3.854 16 H 0.088 0.912 17 C -0.123 4.123 18 C -0.132 4.132 19 C 0.177 3.823 20 H 0.046 0.954 21 N -0.726 5.726 22 C -0.237 4.237 23 H 0.070 0.930 24 C -0.015 4.015 25 N -0.933 5.933 26 Si 0.905 3.095 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 C -0.121 4.121 31 C -0.118 4.118 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.136 0.864 38 H 0.158 0.842 39 H 0.158 0.842 40 H 0.137 0.863 41 H 0.397 0.603 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.063 0.937 45 H 0.056 0.944 46 H 0.383 0.617 47 H 0.254 0.746 48 H 0.068 0.932 49 H 0.062 0.938 50 H 0.062 0.938 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.992 14.783 29.030 32.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.009 3.991 3 H 0.104 0.896 4 O -0.266 6.266 5 C 0.022 3.978 6 C -0.053 4.053 7 C -0.171 4.171 8 C -0.061 4.061 9 N -0.192 5.192 10 C -0.060 4.060 11 C -0.169 4.169 12 C 0.295 3.705 13 O -0.389 6.389 14 N -0.376 5.376 15 C 0.043 3.957 16 H 0.106 0.894 17 C -0.163 4.163 18 C -0.174 4.174 19 C 0.067 3.933 20 H 0.064 0.936 21 N -0.366 5.366 22 C -0.368 4.368 23 H 0.088 0.912 24 C -0.211 4.211 25 N -0.581 5.581 26 Si 0.736 3.264 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 C -0.160 4.160 31 C -0.157 4.157 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.154 0.846 38 H 0.175 0.825 39 H 0.176 0.824 40 H 0.155 0.845 41 H 0.230 0.770 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.075 0.925 46 H 0.217 0.783 47 H 0.064 0.936 48 H 0.087 0.913 49 H 0.081 0.919 50 H 0.081 0.919 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.334 13.259 29.712 32.707 hybrid contribution -0.969 0.589 -1.533 1.907 sum -4.304 13.848 28.179 31.692 Atomic orbital electron populations 1.22240 0.93325 1.04151 1.03146 1.21949 0.95246 0.96259 0.85649 0.89571 1.88151 1.86568 1.33455 1.18420 1.21420 1.00095 0.91646 0.84646 1.19946 0.93715 0.96911 0.94717 1.22081 1.00983 0.98284 0.95802 1.22788 0.91992 0.95266 0.96086 1.67678 1.03406 1.19496 1.28595 1.22807 0.99795 0.92953 0.90423 1.22119 0.95858 0.99849 0.99065 1.20274 0.80161 0.85788 0.84232 1.90762 1.38995 1.22789 1.86313 1.46098 1.58150 1.27700 1.05628 1.21131 0.98623 0.93129 0.82815 0.89427 1.21894 0.98145 0.97523 0.98713 1.22228 1.01218 0.99674 0.94234 1.20237 0.95408 0.90613 0.87008 0.93616 1.42437 1.07033 1.63896 1.23214 1.19293 0.89808 1.26237 1.01447 0.91171 1.24739 0.95905 1.01584 0.98849 1.69670 1.11725 1.48332 1.28416 0.86143 0.80152 0.79095 0.80963 1.20602 1.21924 1.21917 1.21765 0.99829 0.98604 0.95756 1.21756 1.01620 0.97400 0.94877 0.90843 0.91267 0.90673 0.91710 0.91664 0.84592 0.82519 0.82446 0.84511 0.76962 0.92296 0.92378 0.91783 0.92481 0.78312 0.93608 0.91334 0.91945 0.91896 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.04 9.48 37.16 0.35 -0.69 16 2 C 0.07 0.58 3.13 -27.88 -0.09 0.49 16 3 H 0.09 0.45 7.79 -51.93 -0.40 0.04 16 4 O -0.35 -3.63 9.51 -55.09 -0.52 -4.15 16 5 C 0.10 0.67 5.92 36.01 0.21 0.89 16 6 C -0.04 -0.36 5.55 -104.32 -0.58 -0.94 16 7 C -0.15 -1.12 9.82 -39.44 -0.39 -1.51 16 8 C 0.10 0.76 11.18 -17.55 -0.20 0.56 16 9 N -0.48 -4.72 10.36 -13.25 -0.14 -4.85 16 10 C 0.10 0.81 11.18 -17.54 -0.20 0.61 16 11 C -0.15 -1.20 9.82 -39.44 -0.39 -1.58 16 12 C 0.51 6.14 7.14 -10.99 -0.08 6.06 16 13 O -0.51 -8.91 16.17 -14.31 -0.23 -9.14 16 14 N -0.72 -7.21 5.04 -53.80 -0.27 -7.48 16 15 C 0.15 1.88 2.45 -67.93 -0.17 1.71 16 16 H 0.09 1.34 7.58 -51.93 -0.39 0.94 16 17 C -0.12 -1.81 5.49 -26.73 -0.15 -1.96 16 18 C -0.13 -2.41 5.50 -26.73 -0.15 -2.56 16 19 C 0.18 3.42 2.77 -67.93 -0.19 3.23 16 20 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 21 N -0.73 -18.06 5.12 -53.43 -0.27 -18.34 16 22 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 23 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 24 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 25 N -0.93 -28.30 13.06 55.49 0.72 -27.58 16 26 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 27 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 28 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 29 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 30 C -0.12 -1.89 5.39 -26.70 -0.14 -2.03 16 31 C -0.12 -1.38 5.40 -26.70 -0.14 -1.53 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.30 7.87 -51.93 -0.41 -0.11 16 34 H 0.07 0.34 7.92 -51.93 -0.41 -0.08 16 35 H 0.06 0.34 8.04 -51.93 -0.42 -0.08 16 36 H 0.07 0.30 7.83 -51.93 -0.41 -0.11 16 37 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 41 H 0.40 2.57 8.39 -40.82 -0.34 2.23 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.38 10.18 7.80 -40.82 -0.32 9.87 16 47 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 48 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 49 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 50 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 418.73 15.07 6.31 6.31 Total: -1.00 -36.14 418.73 -10.52 -46.66 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -8.56 Total: 7.58 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -2.53 Total: -6.46 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: 0.04 Total: -58.24 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.76 Total: -13.30 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -36.14 -10.52 -46.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495470938.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.701 kcal (2) G-P(sol) polarization free energy of solvation -36.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds