Wall clock time and date at job start Wed Apr 1 2020 05:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46756 * 2 1 4 4 O 1.42897 * 109.47245 * 120.00302 * 2 1 3 5 5 C 1.42903 * 113.99811 * 269.99925 * 4 2 1 6 6 C 1.50700 * 109.46385 * 180.02562 * 5 4 2 7 7 C 1.38647 * 120.79155 * 269.71385 * 6 5 4 8 8 C 1.38202 * 119.16151 * 179.80324 * 7 6 5 9 9 N 1.31864 * 120.76740 * 0.49291 * 8 7 6 10 10 C 1.31876 * 121.72512 * 359.74028 * 9 8 7 11 11 C 1.38206 * 120.76143 * 0.02562 * 10 9 8 12 12 C 1.50696 * 109.46695 * 240.00605 * 2 1 3 13 13 O 1.21287 * 119.99595 * 244.99222 * 12 2 1 14 14 N 1.34780 * 120.00373 * 65.00265 * 12 2 1 15 15 C 1.46506 * 120.00088 * 180.02562 * 14 12 2 16 16 H 1.09000 * 109.46872 * 324.99405 * 15 14 12 17 17 C 1.52997 * 109.47277 * 84.99368 * 15 14 12 18 18 C 1.52996 * 109.47165 * 180.02562 * 17 15 14 19 19 C 1.53002 * 109.46972 * 300.00293 * 18 17 15 20 20 H 1.09000 * 109.46986 * 299.99742 * 19 18 17 21 21 N 1.46496 * 109.47428 * 180.02562 * 19 18 17 22 22 C 1.36941 * 120.00340 * 84.99574 * 21 19 18 23 23 H 1.08004 * 119.99649 * 0.02562 * 22 21 19 24 24 C 1.38815 * 119.99905 * 180.02562 * 22 21 19 25 25 N 1.31613 * 119.99986 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99685 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.47350 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47491 * 119.99499 * 26 24 22 29 29 H 1.48502 * 109.47083 * 239.99522 * 26 24 22 30 30 C 1.52997 * 109.47415 * 59.99860 * 19 18 17 31 31 C 1.52999 * 109.46691 * 204.99775 * 15 14 12 32 32 H 1.08996 * 109.46756 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47054 * 299.99646 * 1 2 3 34 34 H 1.08997 * 109.47171 * 59.99790 * 1 2 3 35 35 H 1.08996 * 109.46960 * 299.99920 * 5 4 2 36 36 H 1.08998 * 109.46627 * 60.00170 * 5 4 2 37 37 H 1.08000 * 120.42059 * 0.02562 * 7 6 5 38 38 H 1.08001 * 119.61704 * 180.25593 * 8 7 6 39 39 H 1.07997 * 119.61796 * 180.02562 * 10 9 8 40 40 H 1.07993 * 120.41591 * 180.02562 * 11 10 9 41 41 H 0.97000 * 119.99750 * 359.97438 * 14 12 2 42 42 H 1.09000 * 109.47140 * 60.00200 * 17 15 14 43 43 H 1.09001 * 109.47375 * 300.00183 * 17 15 14 44 44 H 1.08992 * 109.47534 * 180.02562 * 18 17 15 45 45 H 1.08996 * 109.47134 * 59.99508 * 18 17 15 46 46 H 0.97005 * 119.99981 * 264.99973 * 21 19 18 47 47 H 0.97000 * 119.99516 * 180.02562 * 25 24 22 48 48 H 1.09001 * 109.46922 * 180.02562 * 30 19 18 49 49 H 1.09000 * 109.47140 * 59.99976 * 30 19 18 50 50 H 1.08993 * 109.47839 * 59.99891 * 31 15 14 51 51 H 1.09000 * 109.47160 * 299.99453 * 31 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2002 0.1829 2.2940 6 6 2.7016 -0.6284 3.4609 7 6 1.8152 -1.2046 4.3579 8 6 2.3117 -1.9453 5.4137 9 7 3.6110 -2.0985 5.5781 10 6 4.4832 -1.5612 4.7476 11 6 4.0605 -0.8113 3.6663 12 6 2.0323 -0.7103 -1.2305 13 8 2.6530 -1.7465 -1.1216 14 7 1.7919 -0.1939 -2.4521 15 6 2.2797 -0.8848 -3.6484 16 1 3.2397 -1.3531 -3.4314 17 6 1.2714 -1.9577 -4.0645 18 6 1.7811 -2.6795 -5.3135 19 6 1.9518 -1.6711 -6.4514 20 1 0.9919 -1.2028 -6.6688 21 7 2.4393 -2.3623 -7.6475 22 6 1.5530 -2.9710 -8.4957 23 1 0.4946 -2.9411 -8.2829 24 6 2.0151 -3.6264 -9.6287 25 7 3.3049 -3.6624 -9.8881 26 14 0.8061 -4.4561 -10.7860 27 1 -0.5755 -4.2722 -10.2735 28 1 0.9181 -3.8497 -12.1369 29 1 1.1145 -5.9065 -10.8674 30 6 2.9601 -0.5983 -6.0353 31 6 2.4499 0.1240 -4.7860 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8899 35 1 2.9320 0.9512 2.0450 36 1 1.2539 0.6545 2.5588 37 1 0.7500 -1.0791 4.2311 38 1 1.6277 -2.4008 6.1144 39 1 5.5400 -1.7088 4.9144 40 1 4.7796 -0.3742 2.9895 41 1 1.2952 0.6347 -2.5391 42 1 0.3113 -1.4894 -4.2815 43 1 1.1501 -2.6763 -3.2540 44 1 1.0627 -3.4435 -5.6102 45 1 2.7411 -3.1478 -5.0961 46 1 3.3899 -2.3889 -7.8387 47 1 3.6277 -4.1201 -10.6801 48 1 3.0812 0.1204 -6.8458 49 1 3.9200 -1.0666 -5.8178 50 1 3.1681 0.8883 -4.4896 51 1 1.4898 0.5923 -5.0030 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495470938.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:30 Heat of formation + Delta-G solvation = -72.863974 kcal Electronic energy + Delta-G solvation = -29642.319304 eV Core-core repulsion = 25540.312905 eV Total energy + Delta-G solvation = -4102.006399 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.34591 -41.03399 -39.59978 -38.51454 -36.35390 -34.80793 -34.36412 -32.79451 -32.16087 -31.71261 -31.68523 -28.87099 -27.87195 -25.86843 -24.88562 -24.42836 -23.63411 -22.98652 -22.43628 -21.40439 -20.84981 -19.16953 -18.52281 -18.21294 -17.51826 -17.41680 -17.01515 -16.71398 -16.54799 -16.31776 -15.95296 -15.57542 -15.40534 -15.21802 -15.03504 -14.80271 -14.63137 -14.51502 -14.21890 -13.99821 -13.67262 -13.46286 -13.30938 -13.14898 -13.08877 -12.96549 -12.85485 -12.49995 -12.44453 -12.30270 -12.24494 -12.10221 -12.02507 -11.65268 -11.46494 -11.20124 -11.06194 -10.85886 -10.75772 -10.48177 -10.45670 -10.10428 -10.04052 -8.99300 -7.93713 -5.21669 0.12994 0.18363 1.46391 1.47504 1.57109 1.59570 1.87261 2.56282 2.69692 3.09437 3.39438 3.56159 3.60323 3.74586 3.76646 3.79257 3.87128 3.90620 3.97414 4.10264 4.11478 4.19481 4.29787 4.37767 4.39248 4.40632 4.43622 4.53440 4.60063 4.65727 4.68888 4.73098 4.82924 4.86859 4.87053 4.97763 5.00953 5.12389 5.13965 5.24251 5.25921 5.28103 5.33223 5.47631 5.53796 5.55627 5.64134 5.74300 6.02916 6.29338 6.61864 6.98953 7.29566 7.34626 8.12713 8.34584 9.30236 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022428 B = 0.001618 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.150888 B =17298.239713 C =17553.612507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.075 3.925 3 H 0.126 0.874 4 O -0.385 6.385 5 C 0.097 3.903 6 C -0.060 4.060 7 C -0.154 4.154 8 C 0.082 3.918 9 N -0.513 5.513 10 C 0.081 3.919 11 C -0.160 4.160 12 C 0.505 3.495 13 O -0.578 6.578 14 N -0.704 5.704 15 C 0.153 3.847 16 H 0.059 0.941 17 C -0.111 4.111 18 C -0.124 4.124 19 C 0.173 3.827 20 H 0.051 0.949 21 N -0.740 5.740 22 C -0.235 4.235 23 H 0.076 0.924 24 C -0.079 4.079 25 N -0.971 5.971 26 Si 0.970 3.030 27 H -0.265 1.265 28 H -0.292 1.292 29 H -0.298 1.298 30 C -0.114 4.114 31 C -0.103 4.103 32 H 0.047 0.953 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.159 0.841 38 H 0.178 0.822 39 H 0.173 0.827 40 H 0.148 0.852 41 H 0.420 0.580 42 H 0.080 0.920 43 H 0.042 0.958 44 H 0.039 0.961 45 H 0.035 0.965 46 H 0.371 0.629 47 H 0.249 0.751 48 H 0.069 0.931 49 H 0.049 0.951 50 H 0.090 0.910 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.262 17.765 30.118 35.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.014 3.986 3 H 0.144 0.856 4 O -0.304 6.304 5 C 0.021 3.979 6 C -0.068 4.068 7 C -0.173 4.173 8 C -0.074 4.074 9 N -0.223 5.223 10 C -0.075 4.075 11 C -0.180 4.180 12 C 0.292 3.708 13 O -0.457 6.457 14 N -0.357 5.357 15 C 0.049 3.951 16 H 0.077 0.923 17 C -0.151 4.151 18 C -0.165 4.165 19 C 0.064 3.936 20 H 0.069 0.931 21 N -0.379 5.379 22 C -0.367 4.367 23 H 0.094 0.906 24 C -0.271 4.271 25 N -0.622 5.622 26 Si 0.800 3.200 27 H -0.189 1.189 28 H -0.219 1.219 29 H -0.225 1.225 30 C -0.153 4.153 31 C -0.142 4.142 32 H 0.066 0.934 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.177 0.823 38 H 0.195 0.805 39 H 0.190 0.810 40 H 0.166 0.834 41 H 0.258 0.742 42 H 0.099 0.901 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.053 0.947 46 H 0.202 0.798 47 H 0.058 0.942 48 H 0.087 0.913 49 H 0.068 0.932 50 H 0.109 0.891 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.665 16.315 30.841 35.347 hybrid contribution -0.265 -0.342 -1.794 1.846 sum -5.930 15.972 29.046 33.674 Atomic orbital electron populations 1.22258 0.91466 1.03223 1.05457 1.22066 0.96384 0.97010 0.83112 0.85639 1.88107 1.87025 1.35528 1.19715 1.21611 1.01962 0.91174 0.83126 1.20302 0.93878 0.97202 0.95456 1.22371 1.02159 0.97569 0.95243 1.23225 0.91864 0.95474 0.96877 1.67683 1.04446 1.20551 1.29601 1.23138 1.00580 0.93133 0.90623 1.22345 0.96542 0.99922 0.99159 1.21154 0.78874 0.85078 0.85702 1.90741 1.41925 1.25747 1.87240 1.45824 1.57605 1.28028 1.04251 1.20820 0.96735 0.93162 0.84428 0.92306 1.21753 0.99542 0.97642 0.96120 1.22041 0.99555 0.99135 0.95773 1.20500 0.96545 0.91281 0.85229 0.93141 1.42693 1.06163 1.64318 1.24698 1.19682 0.90469 1.25128 1.01434 0.90585 1.25548 0.97525 1.03169 1.00896 1.69827 1.13573 1.49886 1.28964 0.85111 0.78793 0.77388 0.78730 1.18928 1.21938 1.22513 1.21660 0.98287 0.97568 0.97811 1.21655 1.03598 0.96914 0.91989 0.93363 0.88803 0.88539 0.90107 0.88896 0.82311 0.80501 0.80964 0.83400 0.74244 0.90119 0.93910 0.94198 0.94658 0.79788 0.94179 0.91273 0.93170 0.89118 0.88933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 9.48 71.98 0.68 -0.72 16 2 C 0.07 0.99 3.13 29.85 0.09 1.08 16 3 H 0.13 0.66 7.79 -2.39 -0.02 0.64 16 4 O -0.38 -7.27 9.51 -129.99 -1.24 -8.51 16 5 C 0.10 1.05 5.92 71.24 0.42 1.48 16 6 C -0.06 -0.89 5.55 -19.67 -0.11 -1.00 16 7 C -0.15 -2.06 9.82 22.36 0.22 -1.84 16 8 C 0.08 1.26 11.18 84.68 0.95 2.21 16 9 N -0.51 -10.08 10.36 -195.84 -2.03 -12.11 16 10 C 0.08 1.37 11.18 84.68 0.95 2.32 16 11 C -0.16 -2.49 9.82 22.36 0.22 -2.27 16 12 C 0.51 11.27 7.14 87.66 0.63 11.90 16 13 O -0.58 -20.30 16.17 15.94 0.26 -20.04 16 14 N -0.70 -11.92 5.04 -442.52 -2.23 -14.15 16 15 C 0.15 3.67 2.45 44.99 0.11 3.78 16 16 H 0.06 1.80 7.58 -2.39 -0.02 1.78 16 17 C -0.11 -3.17 5.49 30.59 0.17 -3.00 16 18 C -0.12 -4.61 5.50 30.59 0.17 -4.44 16 19 C 0.17 6.60 2.77 44.99 0.12 6.73 16 20 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16 21 N -0.74 -37.51 5.12 -322.94 -1.65 -39.16 16 22 C -0.24 -13.13 9.93 84.03 0.83 -12.29 16 23 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 24 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 25 N -0.97 -60.38 13.06 21.65 0.28 -60.10 16 26 Si 0.97 46.68 29.55 68.60 2.03 48.70 16 27 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 28 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 29 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 30 C -0.11 -3.44 5.39 30.61 0.17 -3.28 16 31 C -0.10 -2.08 5.40 30.61 0.17 -1.92 16 32 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.09 0.36 7.87 -2.39 -0.02 0.34 16 34 H 0.10 0.39 7.92 -2.39 -0.02 0.37 16 35 H 0.08 0.59 8.04 -2.39 -0.02 0.57 16 36 H 0.09 0.46 7.83 -2.39 -0.02 0.45 16 37 H 0.16 1.25 8.06 -2.91 -0.02 1.22 16 38 H 0.18 1.71 8.06 -2.91 -0.02 1.69 16 39 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 40 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 41 H 0.42 3.39 8.39 -92.71 -0.78 2.61 16 42 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.37 20.36 7.80 -92.70 -0.72 19.64 16 47 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 48 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 49 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 50 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 51 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -83.27 418.73 1.10 -82.17 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: -0.57 Total: 28.62 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: 6.25 Total: -5.42 kcal Atomic # 7 Polarization: -119.89 SS G_CDS: -5.63 Total: -125.52 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -0.98 Total: -28.55 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.70 kcal Total: -83.27 1.10 -82.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495470938.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.307 kcal (2) G-P(sol) polarization free energy of solvation -83.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds