Wall clock time and date at job start Wed Apr 1 2020 04:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47195 * 2 1 4 4 O 1.42905 * 109.47276 * 119.99555 * 2 1 3 5 5 C 1.42902 * 113.99977 * 270.00404 * 4 2 1 6 6 C 1.50704 * 109.47012 * 180.02562 * 5 4 2 7 7 C 1.38653 * 120.78389 * 269.71779 * 6 5 4 8 8 C 1.38201 * 119.15715 * 179.75373 * 7 6 5 9 9 N 1.31875 * 120.76612 * 0.53232 * 8 7 6 10 10 C 1.31871 * 121.72271 * 359.74183 * 9 8 7 11 11 C 1.38198 * 120.76486 * 359.97438 * 10 9 8 12 12 C 1.50694 * 109.47431 * 239.99617 * 2 1 3 13 13 O 1.21278 * 120.00439 * 249.59325 * 12 2 1 14 14 N 1.34779 * 119.99936 * 69.59685 * 12 2 1 15 15 C 1.47027 * 125.65153 * 175.23261 * 14 12 2 16 16 C 1.54319 * 107.27268 * 181.09370 * 15 14 12 17 17 C 1.55154 * 102.94125 * 22.19254 * 16 15 14 18 18 H 1.09001 * 111.04258 * 82.58828 * 17 16 15 19 19 C 1.53003 * 111.00452 * 206.42191 * 17 16 15 20 20 C 1.53003 * 109.47261 * 287.20078 * 19 17 16 21 21 N 1.46500 * 109.46836 * 179.97438 * 20 19 17 22 22 C 1.36942 * 119.99697 * 179.97438 * 21 20 19 23 23 H 1.08007 * 119.99784 * 0.02562 * 22 21 20 24 24 C 1.38806 * 120.00042 * 179.97438 * 22 21 20 25 25 N 1.31620 * 120.00216 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00105 * 180.27638 * 24 22 21 27 27 H 1.48497 * 109.47314 * 179.72489 * 26 24 22 28 28 H 1.48498 * 109.47143 * 299.72902 * 26 24 22 29 29 H 1.48509 * 109.47133 * 59.72523 * 26 24 22 30 30 C 1.47429 * 125.64611 * 355.27128 * 14 12 2 31 31 H 1.08993 * 109.46833 * 64.96008 * 1 2 3 32 32 H 1.08998 * 109.46527 * 184.96123 * 1 2 3 33 33 H 1.08995 * 109.47074 * 304.95763 * 1 2 3 34 34 H 1.09000 * 109.46863 * 299.99386 * 5 4 2 35 35 H 1.08996 * 109.46932 * 59.99561 * 5 4 2 36 36 H 1.07998 * 120.42180 * 359.97438 * 7 6 5 37 37 H 1.08001 * 119.62060 * 180.29292 * 8 7 6 38 38 H 1.07995 * 119.61268 * 180.02562 * 10 9 8 39 39 H 1.07996 * 120.41755 * 180.02562 * 11 10 9 40 40 H 1.08999 * 109.87610 * 300.51284 * 15 14 12 41 41 H 1.08999 * 109.87906 * 61.52179 * 15 14 12 42 42 H 1.09000 * 110.71945 * 263.82660 * 16 15 14 43 43 H 1.08996 * 110.72084 * 140.55749 * 16 15 14 44 44 H 1.08998 * 109.47400 * 167.19880 * 19 17 16 45 45 H 1.08998 * 109.47184 * 47.19653 * 19 17 16 46 46 H 1.08998 * 109.47075 * 59.99603 * 20 19 17 47 47 H 1.09006 * 109.46526 * 299.99608 * 20 19 17 48 48 H 0.96995 * 120.00421 * 359.97438 * 21 20 19 49 49 H 0.96997 * 120.00455 * 179.97438 * 25 24 22 50 50 H 1.08994 * 110.36734 * 37.00416 * 30 14 12 51 51 H 1.09001 * 110.46205 * 274.71984 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1669 5 6 2.2001 0.1831 2.2941 6 6 2.7015 -0.6280 3.4611 7 6 1.8149 -1.2041 4.3581 8 6 2.3113 -1.9454 5.4135 9 7 3.6108 -2.0987 5.5780 10 6 4.4830 -1.5607 4.7480 11 6 4.0603 -0.8111 3.6666 12 6 2.0324 -0.7104 -1.2303 13 8 2.5798 -1.7878 -1.1275 14 7 1.8734 -0.1486 -2.4451 15 6 2.3995 -0.6805 -3.7108 16 6 1.9951 0.3066 -4.8259 17 6 1.7511 1.6273 -4.0492 18 1 2.6884 2.1535 -3.8676 19 6 0.7572 2.5239 -4.7904 20 6 1.4330 3.1222 -6.0258 21 7 0.4811 3.9801 -6.7358 22 6 0.8644 4.6278 -7.8798 23 1 1.8684 4.5059 -8.2589 24 6 -0.0376 5.4403 -8.5528 25 7 -1.2613 5.5886 -8.0912 26 14 0.4829 6.3178 -10.1176 27 1 -0.6570 7.1116 -10.6426 28 1 1.6221 7.2232 -9.8218 29 1 0.8975 5.3159 -11.1324 30 6 1.1439 1.1017 -2.7246 31 1 -0.3633 0.4349 -0.9310 32 1 -0.3632 -1.0238 0.0889 33 1 -0.3633 0.5888 0.8422 34 1 2.9320 0.9514 2.0450 35 1 1.2538 0.6548 2.5588 36 1 0.7498 -1.0780 4.2316 37 1 1.6273 -2.4014 6.1139 38 1 5.5397 -1.7083 4.9148 39 1 4.7795 -0.3734 2.9902 40 1 3.4856 -0.7559 -3.6582 41 1 1.9690 -1.6624 -3.9076 42 1 1.0821 -0.0240 -5.3211 43 1 2.8040 0.4267 -5.5465 44 1 0.4302 3.3272 -4.1303 45 1 -0.1053 1.9330 -5.0985 46 1 1.7601 2.3189 -6.6859 47 1 2.2956 3.7132 -5.7176 48 1 -0.4206 4.0893 -6.3956 49 1 -1.8915 6.1566 -8.5612 50 1 1.3036 1.8216 -1.9220 51 1 0.0794 0.9022 -2.8482 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501618389.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:19 Heat of formation + Delta-G solvation = -34.644553 kcal Electronic energy + Delta-G solvation = -29338.330378 eV Core-core repulsion = 25237.981298 eV Total energy + Delta-G solvation = -4100.349081 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.72410 -40.41047 -38.64173 -37.49522 -35.18434 -33.94387 -33.07012 -31.93791 -31.63194 -30.68922 -29.51163 -27.46756 -27.32721 -25.08871 -23.89896 -23.79677 -22.58417 -22.36402 -21.60704 -20.32842 -19.59562 -17.99288 -17.30353 -17.07710 -16.98126 -16.74508 -16.20689 -16.04974 -15.84632 -15.29926 -14.78441 -14.59593 -14.21530 -14.14910 -14.03638 -13.90043 -13.72875 -13.50117 -13.39325 -13.20266 -13.04999 -12.77791 -12.56115 -12.44311 -12.10209 -11.98353 -11.77287 -11.66931 -11.34583 -11.09954 -10.84267 -10.72991 -10.58526 -10.42705 -10.39149 -10.19047 -10.08865 -9.90974 -9.79406 -9.68770 -9.56319 -8.90286 -8.85964 -6.96027 -5.80118 -3.08981 0.68711 0.72484 2.35643 2.42518 3.23575 3.41540 3.46042 3.46986 3.60438 4.02752 4.06592 4.21985 4.26223 4.33726 4.45227 4.55100 4.58423 4.59623 4.63066 4.69145 4.78424 4.82962 4.88146 5.05164 5.12742 5.18511 5.24805 5.26187 5.26867 5.35681 5.45480 5.51114 5.52855 5.62905 5.66264 5.70058 5.75664 5.85640 5.88812 5.99839 6.06220 6.17916 6.25667 6.29698 6.30164 6.55300 6.77541 6.82078 7.24667 7.54563 7.65994 7.92759 8.39048 9.50025 10.08009 10.42118 11.42710 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025007 B = 0.001500 C = 0.001473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.404483 B =18659.009971 C =19003.658560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.075 3.925 3 H 0.088 0.912 4 O -0.350 6.350 5 C 0.098 3.902 6 C -0.044 4.044 7 C -0.151 4.151 8 C 0.095 3.905 9 N -0.483 5.483 10 C 0.096 3.904 11 C -0.150 4.150 12 C 0.530 3.470 13 O -0.522 6.522 14 N -0.616 5.616 15 C 0.109 3.891 16 C -0.127 4.127 17 C -0.094 4.094 18 H 0.087 0.913 19 C -0.116 4.116 20 C 0.154 3.846 21 N -0.734 5.734 22 C -0.241 4.241 23 H 0.069 0.931 24 C -0.014 4.014 25 N -0.934 5.934 26 Si 0.907 3.093 27 H -0.291 1.291 28 H -0.286 1.286 29 H -0.286 1.286 30 C 0.098 3.902 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.137 0.863 37 H 0.158 0.842 38 H 0.158 0.842 39 H 0.137 0.863 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.020 0.980 47 H 0.017 0.983 48 H 0.383 0.617 49 H 0.256 0.744 50 H 0.076 0.924 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.901 -12.341 24.997 28.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.014 3.986 3 H 0.105 0.895 4 O -0.268 6.268 5 C 0.021 3.979 6 C -0.052 4.052 7 C -0.171 4.171 8 C -0.061 4.061 9 N -0.192 5.192 10 C -0.060 4.060 11 C -0.169 4.169 12 C 0.317 3.683 13 O -0.397 6.397 14 N -0.352 5.352 15 C -0.013 4.013 16 C -0.165 4.165 17 C -0.114 4.114 18 H 0.105 0.895 19 C -0.154 4.154 20 C 0.027 3.973 21 N -0.379 5.379 22 C -0.373 4.373 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.583 5.583 26 Si 0.738 3.262 27 H -0.217 1.217 28 H -0.213 1.213 29 H -0.212 1.212 30 C -0.025 4.025 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.155 0.845 37 H 0.175 0.825 38 H 0.175 0.825 39 H 0.155 0.845 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.037 0.963 47 H 0.035 0.965 48 H 0.217 0.783 49 H 0.065 0.935 50 H 0.094 0.906 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.644 -13.610 25.710 29.839 hybrid contribution -0.462 1.419 -1.584 2.176 sum 6.182 -12.191 24.126 27.729 Atomic orbital electron populations 1.22297 0.93130 1.04116 1.03705 1.21864 0.95467 0.96142 0.85110 0.89450 1.88118 1.86621 1.33601 1.18465 1.21436 1.00297 0.91621 0.84522 1.19950 0.93707 0.96815 0.94730 1.22095 1.01039 0.98205 0.95768 1.22792 0.91979 0.95299 0.96060 1.67680 1.03409 1.19592 1.28524 1.22795 0.99775 0.93026 0.90425 1.22116 0.95862 0.99849 0.99117 1.19945 0.79630 0.85702 0.83058 1.90730 1.42623 1.20638 1.85673 1.48453 1.54702 1.25777 1.06304 1.21988 0.99098 0.97781 0.82414 1.22769 1.03183 0.93884 0.96645 1.22345 0.99957 0.95770 0.93307 0.89510 1.21683 0.97697 0.98380 0.97627 1.20623 0.92823 0.92898 0.90995 1.42354 1.12220 1.54761 1.28521 1.19190 0.96837 1.20781 1.00447 0.91257 1.24738 0.95943 1.00813 0.99453 1.69643 1.04501 1.42922 1.41205 0.86266 0.77182 0.79431 0.83293 1.21654 1.21268 1.21243 1.22598 0.96574 0.85045 0.98281 0.90289 0.90877 0.91044 0.91623 0.91492 0.84534 0.82500 0.82469 0.84531 0.91447 0.91381 0.90025 0.89482 0.91514 0.91486 0.96265 0.96522 0.78334 0.93459 0.90590 0.90530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 9.43 37.16 0.35 -0.90 16 2 C 0.08 0.68 2.46 -27.89 -0.07 0.62 16 3 H 0.09 0.59 7.15 -51.93 -0.37 0.22 16 4 O -0.35 -3.72 9.52 -54.96 -0.52 -4.24 16 5 C 0.10 0.70 5.92 36.01 0.21 0.92 16 6 C -0.04 -0.35 5.55 -104.32 -0.58 -0.93 16 7 C -0.15 -1.11 9.82 -39.44 -0.39 -1.49 16 8 C 0.10 0.74 11.18 -17.55 -0.20 0.55 16 9 N -0.48 -4.59 10.36 -13.25 -0.14 -4.73 16 10 C 0.10 0.78 11.18 -17.55 -0.20 0.58 16 11 C -0.15 -1.18 9.82 -39.45 -0.39 -1.56 16 12 C 0.53 6.56 7.20 -10.99 -0.08 6.48 16 13 O -0.52 -8.72 16.86 -14.17 -0.24 -8.96 16 14 N -0.62 -6.61 3.33 -170.52 -0.57 -7.17 16 15 C 0.11 1.16 6.87 -3.06 -0.02 1.14 16 16 C -0.13 -1.28 5.90 -24.90 -0.15 -1.43 16 17 C -0.09 -0.98 3.00 -88.47 -0.27 -1.25 16 18 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 19 C -0.12 -1.56 4.83 -26.73 -0.13 -1.69 16 20 C 0.15 2.84 6.16 -4.04 -0.02 2.82 16 21 N -0.73 -17.97 5.60 -59.90 -0.34 -18.30 16 22 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 23 H 0.07 1.85 7.83 -52.48 -0.41 1.43 16 24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -27.73 13.06 55.49 0.72 -27.01 16 26 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 29 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 30 C 0.10 0.86 4.89 -2.53 -0.01 0.85 16 31 H 0.08 0.52 5.84 -51.93 -0.30 0.21 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.38 7.99 -51.93 -0.41 -0.04 16 34 H 0.07 0.38 8.05 -51.93 -0.42 -0.04 16 35 H 0.07 0.34 7.95 -51.93 -0.41 -0.07 16 36 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.08 0.85 7.91 -51.93 -0.41 0.44 16 43 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.07 0.92 7.97 -51.93 -0.41 0.51 16 46 H 0.02 0.36 7.75 -51.93 -0.40 -0.04 16 47 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 48 H 0.38 9.81 7.67 -40.82 -0.31 9.49 16 49 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 50 H 0.08 0.54 7.19 -51.93 -0.37 0.17 16 51 H 0.08 0.64 7.26 -51.93 -0.38 0.26 16 LS Contribution 417.40 15.07 6.29 6.29 Total: -1.00 -35.68 417.40 -10.39 -46.07 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -8.41 Total: 3.63 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -2.18 Total: -2.58 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: -0.32 Total: -57.21 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -0.76 Total: -13.20 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -35.68 -10.39 -46.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501618389.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.428 kcal (2) G-P(sol) polarization free energy of solvation -35.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds