Wall clock time and date at job start Wed Apr 1 2020 04:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47195 * 2 1 4 4 O 1.42905 * 109.47276 * 119.99555 * 2 1 3 5 5 C 1.42902 * 113.99977 * 270.00404 * 4 2 1 6 6 C 1.50704 * 109.47012 * 180.02562 * 5 4 2 7 7 C 1.38653 * 120.78389 * 269.71779 * 6 5 4 8 8 C 1.38201 * 119.15715 * 179.75373 * 7 6 5 9 9 N 1.31875 * 120.76612 * 0.53232 * 8 7 6 10 10 C 1.31871 * 121.72271 * 359.74183 * 9 8 7 11 11 C 1.38198 * 120.76486 * 359.97438 * 10 9 8 12 12 C 1.50694 * 109.47431 * 239.99617 * 2 1 3 13 13 O 1.21278 * 120.00439 * 249.59325 * 12 2 1 14 14 N 1.34779 * 119.99936 * 69.59685 * 12 2 1 15 15 C 1.47027 * 125.65153 * 175.23261 * 14 12 2 16 16 C 1.54319 * 107.27268 * 181.09370 * 15 14 12 17 17 C 1.55154 * 102.94125 * 22.19254 * 16 15 14 18 18 H 1.09001 * 111.04258 * 82.58828 * 17 16 15 19 19 C 1.53003 * 111.00452 * 206.42191 * 17 16 15 20 20 C 1.53003 * 109.47261 * 287.20078 * 19 17 16 21 21 N 1.46500 * 109.46836 * 179.97438 * 20 19 17 22 22 C 1.36942 * 119.99697 * 179.97438 * 21 20 19 23 23 H 1.08007 * 119.99784 * 0.02562 * 22 21 20 24 24 C 1.38806 * 120.00042 * 179.97438 * 22 21 20 25 25 N 1.31620 * 120.00216 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00105 * 180.27638 * 24 22 21 27 27 H 1.48497 * 109.47314 * 179.72489 * 26 24 22 28 28 H 1.48498 * 109.47143 * 299.72902 * 26 24 22 29 29 H 1.48509 * 109.47133 * 59.72523 * 26 24 22 30 30 C 1.47429 * 125.64611 * 355.27128 * 14 12 2 31 31 H 1.08993 * 109.46833 * 64.96008 * 1 2 3 32 32 H 1.08998 * 109.46527 * 184.96123 * 1 2 3 33 33 H 1.08995 * 109.47074 * 304.95763 * 1 2 3 34 34 H 1.09000 * 109.46863 * 299.99386 * 5 4 2 35 35 H 1.08996 * 109.46932 * 59.99561 * 5 4 2 36 36 H 1.07998 * 120.42180 * 359.97438 * 7 6 5 37 37 H 1.08001 * 119.62060 * 180.29292 * 8 7 6 38 38 H 1.07995 * 119.61268 * 180.02562 * 10 9 8 39 39 H 1.07996 * 120.41755 * 180.02562 * 11 10 9 40 40 H 1.08999 * 109.87610 * 300.51284 * 15 14 12 41 41 H 1.08999 * 109.87906 * 61.52179 * 15 14 12 42 42 H 1.09000 * 110.71945 * 263.82660 * 16 15 14 43 43 H 1.08996 * 110.72084 * 140.55749 * 16 15 14 44 44 H 1.08998 * 109.47400 * 167.19880 * 19 17 16 45 45 H 1.08998 * 109.47184 * 47.19653 * 19 17 16 46 46 H 1.08998 * 109.47075 * 59.99603 * 20 19 17 47 47 H 1.09006 * 109.46526 * 299.99608 * 20 19 17 48 48 H 0.96995 * 120.00421 * 359.97438 * 21 20 19 49 49 H 0.96997 * 120.00455 * 179.97438 * 25 24 22 50 50 H 1.08994 * 110.36734 * 37.00416 * 30 14 12 51 51 H 1.09001 * 110.46205 * 274.71984 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1669 5 6 2.2001 0.1831 2.2941 6 6 2.7015 -0.6280 3.4611 7 6 1.8149 -1.2041 4.3581 8 6 2.3113 -1.9454 5.4135 9 7 3.6108 -2.0987 5.5780 10 6 4.4830 -1.5607 4.7480 11 6 4.0603 -0.8111 3.6666 12 6 2.0324 -0.7104 -1.2303 13 8 2.5798 -1.7878 -1.1275 14 7 1.8734 -0.1486 -2.4451 15 6 2.3995 -0.6805 -3.7108 16 6 1.9951 0.3066 -4.8259 17 6 1.7511 1.6273 -4.0492 18 1 2.6884 2.1535 -3.8676 19 6 0.7572 2.5239 -4.7904 20 6 1.4330 3.1222 -6.0258 21 7 0.4811 3.9801 -6.7358 22 6 0.8644 4.6278 -7.8798 23 1 1.8684 4.5059 -8.2589 24 6 -0.0376 5.4403 -8.5528 25 7 -1.2613 5.5886 -8.0912 26 14 0.4829 6.3178 -10.1176 27 1 -0.6570 7.1116 -10.6426 28 1 1.6221 7.2232 -9.8218 29 1 0.8975 5.3159 -11.1324 30 6 1.1439 1.1017 -2.7246 31 1 -0.3633 0.4349 -0.9310 32 1 -0.3632 -1.0238 0.0889 33 1 -0.3633 0.5888 0.8422 34 1 2.9320 0.9514 2.0450 35 1 1.2538 0.6548 2.5588 36 1 0.7498 -1.0780 4.2316 37 1 1.6273 -2.4014 6.1139 38 1 5.5397 -1.7083 4.9148 39 1 4.7795 -0.3734 2.9902 40 1 3.4856 -0.7559 -3.6582 41 1 1.9690 -1.6624 -3.9076 42 1 1.0821 -0.0240 -5.3211 43 1 2.8040 0.4267 -5.5465 44 1 0.4302 3.3272 -4.1303 45 1 -0.1053 1.9330 -5.0985 46 1 1.7601 2.3189 -6.6859 47 1 2.2956 3.7132 -5.7176 48 1 -0.4206 4.0893 -6.3956 49 1 -1.8915 6.1566 -8.5612 50 1 1.3036 1.8216 -1.9220 51 1 0.0794 0.9022 -2.8482 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501618389.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:18 Heat of formation + Delta-G solvation = -57.028516 kcal Electronic energy + Delta-G solvation = -29339.301020 eV Core-core repulsion = 25237.981298 eV Total energy + Delta-G solvation = -4101.319722 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.46814 -41.07402 -39.41020 -38.39793 -36.78419 -34.66437 -34.36313 -32.97399 -32.16890 -32.05663 -30.40701 -28.74387 -27.90420 -26.06938 -25.32640 -24.43817 -23.35847 -23.08558 -22.95617 -21.26684 -20.45884 -19.10418 -18.68568 -17.93751 -17.59886 -17.40830 -17.02849 -16.80614 -16.60487 -16.47325 -15.99423 -15.65381 -15.35605 -15.19519 -14.93184 -14.81118 -14.65341 -14.55138 -14.31854 -14.05949 -14.01232 -13.55992 -13.38375 -13.23999 -13.05644 -12.97626 -12.76118 -12.68667 -12.51963 -12.35583 -12.28246 -12.21040 -11.93981 -11.62543 -11.53221 -11.46664 -11.11343 -10.87499 -10.77802 -10.56883 -10.48823 -10.11044 -9.74353 -8.95633 -7.93083 -5.21066 0.11343 0.17797 1.46337 1.49544 1.51752 1.57951 1.66290 2.57751 2.61705 3.02263 3.30707 3.40931 3.49571 3.56555 3.68702 3.74591 3.79550 3.81133 3.90441 4.02399 4.09662 4.18368 4.19311 4.27111 4.35565 4.37736 4.41249 4.50351 4.58089 4.64838 4.67167 4.68578 4.75772 4.80440 4.86605 4.88677 4.93625 4.96645 4.98359 5.04375 5.17136 5.23613 5.30071 5.32214 5.44885 5.50702 5.54040 5.73401 5.96816 6.30196 6.40922 6.98193 7.03667 7.36553 8.14825 8.36413 9.30126 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025007 B = 0.001500 C = 0.001473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.404483 B =18659.009971 C =19003.658560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.078 3.922 3 H 0.117 0.883 4 O -0.381 6.381 5 C 0.095 3.905 6 C -0.060 4.060 7 C -0.154 4.154 8 C 0.083 3.917 9 N -0.512 5.512 10 C 0.083 3.917 11 C -0.160 4.160 12 C 0.522 3.478 13 O -0.577 6.577 14 N -0.613 5.613 15 C 0.108 3.892 16 C -0.122 4.122 17 C -0.086 4.086 18 H 0.092 0.908 19 C -0.100 4.100 20 C 0.150 3.850 21 N -0.748 5.748 22 C -0.247 4.247 23 H 0.074 0.926 24 C -0.074 4.074 25 N -0.968 5.968 26 Si 0.970 3.030 27 H -0.295 1.295 28 H -0.278 1.278 29 H -0.279 1.279 30 C 0.100 3.900 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.158 0.842 37 H 0.179 0.821 38 H 0.175 0.825 39 H 0.148 0.852 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.065 0.935 46 H 0.021 0.979 47 H 0.018 0.982 48 H 0.374 0.626 49 H 0.251 0.749 50 H 0.103 0.897 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.872 -11.381 25.595 28.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.018 3.982 3 H 0.135 0.865 4 O -0.300 6.300 5 C 0.020 3.980 6 C -0.068 4.068 7 C -0.174 4.174 8 C -0.073 4.073 9 N -0.222 5.222 10 C -0.073 4.073 11 C -0.180 4.180 12 C 0.311 3.689 13 O -0.456 6.456 14 N -0.348 5.348 15 C -0.014 4.014 16 C -0.160 4.160 17 C -0.106 4.106 18 H 0.110 0.890 19 C -0.138 4.138 20 C 0.024 3.976 21 N -0.391 5.391 22 C -0.379 4.379 23 H 0.092 0.908 24 C -0.266 4.266 25 N -0.619 5.619 26 Si 0.799 3.201 27 H -0.222 1.222 28 H -0.204 1.204 29 H -0.205 1.205 30 C -0.022 4.022 31 H 0.106 0.894 32 H 0.074 0.926 33 H 0.115 0.885 34 H 0.097 0.903 35 H 0.109 0.891 36 H 0.176 0.824 37 H 0.196 0.804 38 H 0.192 0.808 39 H 0.166 0.834 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.098 0.902 43 H 0.107 0.893 44 H 0.090 0.910 45 H 0.083 0.917 46 H 0.039 0.961 47 H 0.036 0.964 48 H 0.206 0.794 49 H 0.060 0.940 50 H 0.122 0.878 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.641 -12.643 26.311 29.937 hybrid contribution -0.400 1.068 -1.759 2.096 sum 6.242 -11.575 24.551 27.852 Atomic orbital electron populations 1.22293 0.91575 1.03622 1.05255 1.21964 0.96451 0.96609 0.83201 0.86541 1.88082 1.86976 1.35383 1.19533 1.21621 1.01947 0.91253 0.83193 1.20258 0.93986 0.97187 0.95349 1.22371 1.02134 0.97576 0.95283 1.23225 0.91890 0.95419 0.96757 1.67694 1.04396 1.20592 1.29480 1.23142 1.00622 0.93054 0.90493 1.22338 0.96416 0.99922 0.99274 1.20696 0.78700 0.85224 0.84251 1.90699 1.45267 1.23126 1.86499 1.48519 1.54185 1.26089 1.05965 1.21969 0.98913 0.97724 0.82811 1.22723 1.03167 0.93642 0.96445 1.22215 0.99401 0.95134 0.93849 0.88969 1.21494 0.97848 0.98742 0.95762 1.20834 0.92194 0.92089 0.92523 1.42599 1.12826 1.55390 1.28309 1.19607 0.96908 1.20219 1.01191 0.90818 1.25524 0.96152 1.02274 1.02698 1.69791 1.05496 1.44018 1.42577 0.85260 0.76681 0.78325 0.79790 1.22156 1.20425 1.20526 1.22703 0.96727 0.84618 0.98149 0.89444 0.92632 0.88516 0.90265 0.89067 0.82411 0.80425 0.80802 0.83398 0.91809 0.92091 0.90219 0.89290 0.90999 0.91676 0.96135 0.96377 0.79373 0.94031 0.87838 0.89418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 9.43 71.98 0.68 -1.27 16 2 C 0.08 1.24 2.46 29.85 0.07 1.31 16 3 H 0.12 1.11 7.15 -2.39 -0.02 1.10 16 4 O -0.38 -7.50 9.52 -130.12 -1.24 -8.74 16 5 C 0.10 1.15 5.92 71.24 0.42 1.57 16 6 C -0.06 -0.89 5.55 -19.67 -0.11 -1.00 16 7 C -0.15 -2.06 9.82 22.36 0.22 -1.84 16 8 C 0.08 1.24 11.18 84.68 0.95 2.19 16 9 N -0.51 -9.66 10.36 -195.85 -2.03 -11.69 16 10 C 0.08 1.34 11.18 84.68 0.95 2.28 16 11 C -0.16 -2.43 9.82 22.36 0.22 -2.21 16 12 C 0.52 12.37 7.20 87.65 0.63 13.00 16 13 O -0.58 -19.57 16.86 15.84 0.27 -19.30 16 14 N -0.61 -12.08 3.33 -811.79 -2.70 -14.78 16 15 C 0.11 2.20 6.87 86.73 0.60 2.80 16 16 C -0.12 -2.28 5.90 31.78 0.19 -2.09 16 17 C -0.09 -1.58 3.00 -9.40 -0.03 -1.60 16 18 H 0.09 1.64 8.14 -2.39 -0.02 1.63 16 19 C -0.10 -2.49 4.83 30.60 0.15 -2.35 16 20 C 0.15 5.31 6.16 86.38 0.53 5.84 16 21 N -0.75 -36.16 5.60 -343.44 -1.92 -38.08 16 22 C -0.25 -13.45 9.99 84.03 0.84 -12.61 16 23 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 24 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 25 N -0.97 -57.71 13.06 21.65 0.28 -57.43 16 26 Si 0.97 45.01 29.55 68.60 2.03 47.03 16 27 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 28 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 29 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 30 C 0.10 1.45 4.89 86.85 0.43 1.87 16 31 H 0.09 0.84 5.84 -2.39 -0.01 0.83 16 32 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.10 0.63 7.99 -2.39 -0.02 0.61 16 34 H 0.08 0.71 8.05 -2.39 -0.02 0.69 16 35 H 0.09 0.62 7.95 -2.39 -0.02 0.61 16 36 H 0.16 1.29 8.06 -2.91 -0.02 1.26 16 37 H 0.18 1.62 8.06 -2.91 -0.02 1.59 16 38 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 39 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 40 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 41 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.08 1.54 7.91 -2.39 -0.02 1.52 16 43 H 0.09 1.63 8.14 -2.39 -0.02 1.62 16 44 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.06 1.67 7.97 -2.39 -0.02 1.65 16 46 H 0.02 0.73 7.75 -2.39 -0.02 0.72 16 47 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 48 H 0.37 19.11 7.67 -92.71 -0.71 18.40 16 49 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 50 H 0.10 1.00 7.19 -2.39 -0.02 0.98 16 51 H 0.09 1.15 7.26 -2.39 -0.02 1.13 16 Total: -1.00 -78.12 417.40 2.09 -76.03 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: 0.21 Total: 24.75 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 7.20 Total: 2.20 kcal Atomic # 7 Polarization: -115.62 SS G_CDS: -6.37 Total: -121.99 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.97 Total: -28.03 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -78.12 2.09 -76.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501618389.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.005 kcal (2) G-P(sol) polarization free energy of solvation -78.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds