Wall clock time and date at job start Wed Apr 1 2020 04:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47041 * 2 1 4 4 O 1.42898 * 109.47145 * 239.99603 * 2 1 3 5 5 C 1.42903 * 113.99969 * 90.00203 * 4 2 1 6 6 C 1.50696 * 109.47390 * 180.02562 * 5 4 2 7 7 C 1.38655 * 120.78870 * 269.72030 * 6 5 4 8 8 C 1.38207 * 119.16322 * 179.75184 * 7 6 5 9 9 N 1.31870 * 120.75951 * 0.53640 * 8 7 6 10 10 C 1.31866 * 121.73088 * 359.72954 * 9 8 7 11 11 C 1.38204 * 120.76340 * 359.97438 * 10 9 8 12 12 C 1.50698 * 109.47311 * 119.99758 * 2 1 3 13 13 O 1.21283 * 120.00237 * 109.92596 * 12 2 1 14 14 N 1.34776 * 119.99875 * 289.93558 * 12 2 1 15 15 C 1.47021 * 125.65003 * 354.78399 * 14 12 2 16 16 C 1.54316 * 107.40643 * 181.02450 * 15 14 12 17 17 C 1.55553 * 102.76198 * 22.23824 * 16 15 14 18 18 H 1.09006 * 111.02116 * 82.55621 * 17 16 15 19 19 C 1.52995 * 110.97134 * 206.40074 * 17 16 15 20 20 C 1.52995 * 109.47291 * 287.19683 * 19 17 16 21 21 N 1.46498 * 109.47053 * 179.97438 * 20 19 17 22 22 C 1.36945 * 119.99874 * 179.97438 * 21 20 19 23 23 H 1.07997 * 119.99833 * 0.02562 * 22 21 20 24 24 C 1.38812 * 119.99507 * 179.97438 * 22 21 20 25 25 N 1.31616 * 120.00785 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99557 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46917 * 60.00343 * 26 24 22 28 28 H 1.48497 * 109.47266 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47286 * 300.00311 * 26 24 22 30 30 C 1.47425 * 125.64923 * 174.83784 * 14 12 2 31 31 H 1.08996 * 109.47317 * 185.55676 * 1 2 3 32 32 H 1.08995 * 109.47127 * 305.56080 * 1 2 3 33 33 H 1.09003 * 109.46795 * 65.56028 * 1 2 3 34 34 H 1.09000 * 109.47057 * 299.99890 * 5 4 2 35 35 H 1.09003 * 109.47143 * 59.99594 * 5 4 2 36 36 H 1.08005 * 120.41951 * 359.97438 * 7 6 5 37 37 H 1.07997 * 119.61546 * 180.24946 * 8 7 6 38 38 H 1.07995 * 119.61986 * 180.02562 * 10 9 8 39 39 H 1.08000 * 120.42310 * 180.02562 * 11 10 9 40 40 H 1.09000 * 109.88326 * 300.52032 * 15 14 12 41 41 H 1.09004 * 109.87987 * 61.52763 * 15 14 12 42 42 H 1.08997 * 110.72574 * 140.63130 * 16 15 14 43 43 H 1.09008 * 110.72210 * 263.91020 * 16 15 14 44 44 H 1.09002 * 109.46821 * 47.19621 * 19 17 16 45 45 H 1.08999 * 109.47148 * 167.19430 * 19 17 16 46 46 H 1.09002 * 109.47138 * 299.99744 * 20 19 17 47 47 H 1.08999 * 109.47231 * 59.99798 * 20 19 17 48 48 H 0.96998 * 120.00014 * 359.97438 * 21 20 19 49 49 H 0.96994 * 120.00524 * 179.97438 * 25 24 22 50 50 H 1.09002 * 110.36009 * 274.66526 * 30 14 12 51 51 H 1.08993 * 110.37019 * 36.98594 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.2001 0.1828 -2.2941 6 6 2.7003 -0.6285 -3.4613 7 6 4.0592 -0.8077 -3.6708 8 6 4.4806 -1.5625 -4.7491 9 7 3.6076 -2.0997 -5.5787 10 6 2.3084 -1.9458 -5.4136 11 6 1.8128 -1.2091 -4.3545 12 6 2.0324 -0.7103 1.2305 13 8 2.5720 -1.7917 1.1286 14 7 1.8818 -0.1440 2.4442 15 6 1.3476 1.2013 2.7017 16 6 1.3855 1.4287 4.2275 17 6 2.4683 0.4164 4.6991 18 1 3.4699 0.8269 4.5704 19 6 2.2316 -0.0015 6.1517 20 6 2.5993 1.1564 7.0818 21 7 2.3721 0.7564 8.4727 22 6 2.6337 1.6358 9.4894 23 1 3.0070 2.6242 9.2658 24 6 2.4179 1.2569 10.8073 25 7 1.9624 0.0525 11.0798 26 14 2.7754 2.4561 12.1943 27 1 1.9361 3.6698 12.0278 28 1 2.4647 1.8137 13.4966 29 1 4.2101 2.8381 12.1610 30 6 2.2265 -0.7705 3.7334 31 1 -0.3634 -1.0228 0.0995 32 1 -0.3633 0.5976 0.8360 33 1 -0.3633 0.4252 -0.9356 34 1 1.2538 0.6545 -2.5589 35 1 2.9320 0.9513 -2.0450 36 1 4.7792 -0.3661 -2.9977 37 1 5.5372 -1.7102 -4.9168 38 1 1.6237 -2.4012 -6.1136 39 1 0.7476 -1.0869 -4.2243 40 1 1.9643 1.9473 2.2003 41 1 0.3206 1.2674 2.3424 42 1 1.6844 2.4513 4.4578 43 1 0.4191 1.1980 4.6760 44 1 1.1814 -0.2586 6.2893 45 1 2.8514 -0.8669 6.3864 46 1 3.6495 1.4135 6.9442 47 1 1.9796 2.0218 6.8471 48 1 2.0364 -0.1312 8.6735 49 1 1.8120 -0.2123 12.0007 50 1 1.4003 -1.3864 4.0887 51 1 3.1318 -1.3694 3.6342 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501618390.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:23 Heat of formation + Delta-G solvation = -33.647010 kcal Electronic energy + Delta-G solvation = -29201.201813 eV Core-core repulsion = 25100.895990 eV Total energy + Delta-G solvation = -4100.305824 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.73356 -40.40637 -38.65450 -37.46186 -35.20510 -33.96649 -33.13546 -31.70167 -31.64660 -30.70341 -29.63174 -27.48513 -27.40182 -25.01196 -23.91398 -23.55655 -22.84387 -22.46190 -21.50164 -20.23625 -19.62667 -18.00334 -17.31258 -17.11604 -16.96359 -16.90339 -16.12459 -16.06162 -15.56054 -15.35161 -14.99406 -14.64605 -14.26222 -14.22570 -14.05577 -13.96359 -13.69513 -13.47229 -13.28909 -13.14363 -13.00162 -12.76991 -12.64470 -12.36557 -12.23730 -12.01165 -11.76739 -11.68035 -11.31743 -11.08524 -10.82191 -10.69817 -10.52419 -10.45515 -10.35106 -10.21601 -10.06425 -9.92575 -9.78769 -9.67504 -9.58068 -8.87804 -8.84609 -6.93124 -5.77229 -3.06184 0.66607 0.70647 2.35534 2.41441 3.22065 3.43032 3.47318 3.48615 3.58480 4.00986 4.04932 4.19061 4.22378 4.39460 4.41800 4.52597 4.54428 4.56171 4.61097 4.66904 4.75017 4.79114 4.85049 4.98707 5.04211 5.16178 5.19123 5.24802 5.33489 5.33809 5.48991 5.52651 5.56643 5.62961 5.66561 5.74571 5.78997 5.83094 5.84537 6.03088 6.06156 6.22163 6.23853 6.33771 6.35730 6.52674 6.81518 6.86170 7.26087 7.53048 7.67997 7.93274 8.41786 9.52609 10.11216 10.45328 11.45619 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.033801 B = 0.001414 C = 0.001400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.177727 B =19802.168603 C =19992.337642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.076 3.924 3 H 0.086 0.914 4 O -0.349 6.349 5 C 0.098 3.902 6 C -0.044 4.044 7 C -0.150 4.150 8 C 0.097 3.903 9 N -0.482 5.482 10 C 0.096 3.904 11 C -0.152 4.152 12 C 0.529 3.471 13 O -0.519 6.519 14 N -0.616 5.616 15 C 0.094 3.906 16 C -0.127 4.127 17 C -0.094 4.094 18 H 0.085 0.915 19 C -0.116 4.116 20 C 0.155 3.845 21 N -0.735 5.735 22 C -0.241 4.241 23 H 0.069 0.931 24 C -0.014 4.014 25 N -0.934 5.934 26 Si 0.907 3.093 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 C 0.110 3.890 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.137 0.863 37 H 0.158 0.842 38 H 0.158 0.842 39 H 0.136 0.864 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.017 0.983 47 H 0.019 0.981 48 H 0.384 0.616 49 H 0.256 0.744 50 H 0.072 0.928 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.878 2.770 -33.197 33.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.015 3.985 3 H 0.103 0.897 4 O -0.267 6.267 5 C 0.022 3.978 6 C -0.053 4.053 7 C -0.169 4.169 8 C -0.060 4.060 9 N -0.192 5.192 10 C -0.061 4.061 11 C -0.171 4.171 12 C 0.316 3.684 13 O -0.394 6.394 14 N -0.353 5.353 15 C -0.029 4.029 16 C -0.165 4.165 17 C -0.113 4.113 18 H 0.104 0.896 19 C -0.154 4.154 20 C 0.028 3.972 21 N -0.379 5.379 22 C -0.373 4.373 23 H 0.087 0.913 24 C -0.210 4.210 25 N -0.582 5.582 26 Si 0.738 3.262 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 C -0.012 4.012 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.155 0.845 37 H 0.176 0.824 38 H 0.175 0.825 39 H 0.154 0.846 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.105 0.895 43 H 0.101 0.899 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.035 0.965 47 H 0.037 0.963 48 H 0.217 0.783 49 H 0.066 0.934 50 H 0.090 0.910 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.192 1.592 -33.963 34.071 hybrid contribution -0.333 1.204 1.688 2.100 sum -2.524 2.796 -32.275 32.494 Atomic orbital electron populations 1.22263 0.93191 1.04133 1.03370 1.21867 0.95355 0.96120 0.85208 0.89672 1.88130 1.86587 1.33575 1.18452 1.21429 1.00201 0.91641 0.84563 1.19943 0.93716 0.96879 0.94725 1.22126 0.95855 0.99849 0.99109 1.22805 0.99792 0.92940 0.90425 1.67676 1.03386 1.19552 1.28559 1.22790 0.91996 0.95285 0.96040 1.22087 1.01003 0.98252 0.95798 1.19928 0.79440 0.86018 0.83041 1.90746 1.41873 1.21234 1.85508 1.48442 1.63936 1.17227 1.05659 1.22243 0.98802 0.83671 0.98192 1.22818 1.00444 1.00823 0.92370 1.22411 0.99517 0.94500 0.94903 0.89623 1.21671 1.02099 0.99896 0.91738 1.20616 0.97177 0.94232 0.85216 1.42366 1.79508 1.16336 0.99666 1.19187 1.36567 0.95325 0.86184 0.91269 1.24744 1.02109 0.96840 0.97269 1.69644 1.51591 1.18396 1.18590 0.86266 0.77990 0.80133 0.81780 1.21273 1.21657 1.21271 1.22383 1.01401 0.96024 0.81360 0.90981 0.90416 0.91040 0.91583 0.91655 0.84513 0.82435 0.82498 0.84570 0.91439 0.91152 0.89476 0.89934 0.91521 0.91466 0.96545 0.96344 0.78303 0.93449 0.90975 0.90211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.11 9.41 37.16 0.35 -0.76 16 2 C 0.08 0.65 2.53 -27.88 -0.07 0.58 16 3 H 0.09 0.51 7.55 -51.93 -0.39 0.12 16 4 O -0.35 -3.61 9.52 -54.94 -0.52 -4.14 16 5 C 0.10 0.66 5.92 36.00 0.21 0.87 16 6 C -0.04 -0.35 5.55 -104.32 -0.58 -0.93 16 7 C -0.15 -1.15 9.82 -39.44 -0.39 -1.53 16 8 C 0.10 0.77 11.18 -17.55 -0.20 0.58 16 9 N -0.48 -4.52 10.36 -13.25 -0.14 -4.66 16 10 C 0.10 0.72 11.18 -17.55 -0.20 0.53 16 11 C -0.15 -1.07 9.82 -39.44 -0.39 -1.45 16 12 C 0.53 6.54 7.17 -10.99 -0.08 6.46 16 13 O -0.52 -8.85 16.76 -14.15 -0.24 -9.09 16 14 N -0.62 -6.61 3.33 -170.53 -0.57 -7.18 16 15 C 0.09 0.72 6.16 -3.07 -0.02 0.70 16 16 C -0.13 -1.17 5.93 -24.68 -0.15 -1.32 16 17 C -0.09 -1.07 3.01 -88.26 -0.27 -1.34 16 18 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 19 C -0.12 -1.71 4.84 -26.74 -0.13 -1.84 16 20 C 0.16 2.96 6.16 -4.05 -0.02 2.93 16 21 N -0.73 -18.44 5.60 -59.91 -0.34 -18.78 16 22 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 23 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 24 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 25 N -0.93 -28.20 13.06 55.49 0.72 -27.47 16 26 Si 0.91 22.25 29.55 -169.99 -5.02 17.22 16 27 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 28 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 29 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 30 C 0.11 1.29 6.40 -2.53 -0.02 1.28 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.40 5.80 -51.93 -0.30 0.10 16 33 H 0.07 0.33 7.78 -51.93 -0.40 -0.07 16 34 H 0.07 0.30 7.74 -51.93 -0.40 -0.10 16 35 H 0.07 0.34 8.04 -51.93 -0.42 -0.07 16 36 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 37 H 0.16 0.86 8.06 -52.49 -0.42 0.43 16 38 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 41 H 0.07 0.42 5.99 -51.93 -0.31 0.11 16 42 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.08 0.79 7.92 -51.92 -0.41 0.38 16 44 H 0.07 0.99 7.98 -51.93 -0.41 0.58 16 45 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.02 0.35 7.75 -51.93 -0.40 -0.05 16 48 H 0.38 10.13 7.67 -40.82 -0.31 9.82 16 49 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 50 H 0.07 0.85 8.04 -51.93 -0.42 0.43 16 51 H 0.08 1.03 7.99 -51.93 -0.41 0.62 16 LS Contribution 417.50 15.07 6.29 6.29 Total: -1.00 -36.38 417.50 -10.36 -46.74 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -8.37 Total: 3.67 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -2.18 Total: -2.61 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: -0.32 Total: -58.08 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: -0.76 Total: -13.23 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -36.38 -10.36 -46.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501618390.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.095 kcal (2) G-P(sol) polarization free energy of solvation -36.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds