Wall clock time and date at job start Wed Apr 1 2020 04:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47041 * 2 1 4 4 O 1.42898 * 109.47145 * 239.99603 * 2 1 3 5 5 C 1.42903 * 113.99969 * 90.00203 * 4 2 1 6 6 C 1.50696 * 109.47390 * 180.02562 * 5 4 2 7 7 C 1.38655 * 120.78870 * 269.72030 * 6 5 4 8 8 C 1.38207 * 119.16322 * 179.75184 * 7 6 5 9 9 N 1.31870 * 120.75951 * 0.53640 * 8 7 6 10 10 C 1.31866 * 121.73088 * 359.72954 * 9 8 7 11 11 C 1.38204 * 120.76340 * 359.97438 * 10 9 8 12 12 C 1.50698 * 109.47311 * 119.99758 * 2 1 3 13 13 O 1.21283 * 120.00237 * 109.92596 * 12 2 1 14 14 N 1.34776 * 119.99875 * 289.93558 * 12 2 1 15 15 C 1.47021 * 125.65003 * 354.78399 * 14 12 2 16 16 C 1.54316 * 107.40643 * 181.02450 * 15 14 12 17 17 C 1.55553 * 102.76198 * 22.23824 * 16 15 14 18 18 H 1.09006 * 111.02116 * 82.55621 * 17 16 15 19 19 C 1.52995 * 110.97134 * 206.40074 * 17 16 15 20 20 C 1.52995 * 109.47291 * 287.19683 * 19 17 16 21 21 N 1.46498 * 109.47053 * 179.97438 * 20 19 17 22 22 C 1.36945 * 119.99874 * 179.97438 * 21 20 19 23 23 H 1.07997 * 119.99833 * 0.02562 * 22 21 20 24 24 C 1.38812 * 119.99507 * 179.97438 * 22 21 20 25 25 N 1.31616 * 120.00785 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99557 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46917 * 60.00343 * 26 24 22 28 28 H 1.48497 * 109.47266 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47286 * 300.00311 * 26 24 22 30 30 C 1.47425 * 125.64923 * 174.83784 * 14 12 2 31 31 H 1.08996 * 109.47317 * 185.55676 * 1 2 3 32 32 H 1.08995 * 109.47127 * 305.56080 * 1 2 3 33 33 H 1.09003 * 109.46795 * 65.56028 * 1 2 3 34 34 H 1.09000 * 109.47057 * 299.99890 * 5 4 2 35 35 H 1.09003 * 109.47143 * 59.99594 * 5 4 2 36 36 H 1.08005 * 120.41951 * 359.97438 * 7 6 5 37 37 H 1.07997 * 119.61546 * 180.24946 * 8 7 6 38 38 H 1.07995 * 119.61986 * 180.02562 * 10 9 8 39 39 H 1.08000 * 120.42310 * 180.02562 * 11 10 9 40 40 H 1.09000 * 109.88326 * 300.52032 * 15 14 12 41 41 H 1.09004 * 109.87987 * 61.52763 * 15 14 12 42 42 H 1.08997 * 110.72574 * 140.63130 * 16 15 14 43 43 H 1.09008 * 110.72210 * 263.91020 * 16 15 14 44 44 H 1.09002 * 109.46821 * 47.19621 * 19 17 16 45 45 H 1.08999 * 109.47148 * 167.19430 * 19 17 16 46 46 H 1.09002 * 109.47138 * 299.99744 * 20 19 17 47 47 H 1.08999 * 109.47231 * 59.99798 * 20 19 17 48 48 H 0.96998 * 120.00014 * 359.97438 * 21 20 19 49 49 H 0.96994 * 120.00524 * 179.97438 * 25 24 22 50 50 H 1.09002 * 110.36009 * 274.66526 * 30 14 12 51 51 H 1.08993 * 110.37019 * 36.98594 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.2001 0.1828 -2.2941 6 6 2.7003 -0.6285 -3.4613 7 6 4.0592 -0.8077 -3.6708 8 6 4.4806 -1.5625 -4.7491 9 7 3.6076 -2.0997 -5.5787 10 6 2.3084 -1.9458 -5.4136 11 6 1.8128 -1.2091 -4.3545 12 6 2.0324 -0.7103 1.2305 13 8 2.5720 -1.7917 1.1286 14 7 1.8818 -0.1440 2.4442 15 6 1.3476 1.2013 2.7017 16 6 1.3855 1.4287 4.2275 17 6 2.4683 0.4164 4.6991 18 1 3.4699 0.8269 4.5704 19 6 2.2316 -0.0015 6.1517 20 6 2.5993 1.1564 7.0818 21 7 2.3721 0.7564 8.4727 22 6 2.6337 1.6358 9.4894 23 1 3.0070 2.6242 9.2658 24 6 2.4179 1.2569 10.8073 25 7 1.9624 0.0525 11.0798 26 14 2.7754 2.4561 12.1943 27 1 1.9361 3.6698 12.0278 28 1 2.4647 1.8137 13.4966 29 1 4.2101 2.8381 12.1610 30 6 2.2265 -0.7705 3.7334 31 1 -0.3634 -1.0228 0.0995 32 1 -0.3633 0.5976 0.8360 33 1 -0.3633 0.4252 -0.9356 34 1 1.2538 0.6545 -2.5589 35 1 2.9320 0.9513 -2.0450 36 1 4.7792 -0.3661 -2.9977 37 1 5.5372 -1.7102 -4.9168 38 1 1.6237 -2.4012 -6.1136 39 1 0.7476 -1.0869 -4.2243 40 1 1.9643 1.9473 2.2003 41 1 0.3206 1.2674 2.3424 42 1 1.6844 2.4513 4.4578 43 1 0.4191 1.1980 4.6760 44 1 1.1814 -0.2586 6.2893 45 1 2.8514 -0.8669 6.3864 46 1 3.6495 1.4135 6.9442 47 1 1.9796 2.0218 6.8471 48 1 2.0364 -0.1312 8.6735 49 1 1.8120 -0.2123 12.0007 50 1 1.4003 -1.3864 4.0887 51 1 3.1318 -1.3694 3.6342 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501618390.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:22 Heat of formation + Delta-G solvation = -57.037553 kcal Electronic energy + Delta-G solvation = -29202.216104 eV Core-core repulsion = 25100.895990 eV Total energy + Delta-G solvation = -4101.320114 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.44975 -41.06993 -39.41057 -38.36925 -36.82690 -34.77344 -34.33684 -32.91138 -32.16869 -31.84124 -30.60617 -28.81150 -27.90891 -26.16911 -25.02323 -24.43991 -23.57447 -23.07135 -22.92577 -21.26871 -20.44646 -19.11838 -18.67889 -17.98747 -17.57557 -17.50709 -16.98797 -16.67703 -16.58127 -16.27772 -16.14286 -15.77434 -15.41955 -15.20043 -15.04758 -14.83481 -14.62083 -14.56137 -14.31264 -14.06127 -13.79525 -13.61154 -13.37713 -13.23427 -13.06146 -12.96689 -12.84748 -12.72402 -12.53711 -12.38288 -12.23661 -12.18763 -11.94793 -11.62113 -11.53344 -11.47172 -11.12781 -10.89013 -10.77864 -10.55987 -10.48670 -10.11142 -9.71535 -8.98161 -7.93872 -5.22933 0.11451 0.17633 1.47507 1.48608 1.51778 1.57948 1.66316 2.57443 2.62617 3.03500 3.31182 3.40084 3.56123 3.58640 3.66874 3.71764 3.75413 3.80227 3.90735 4.02511 4.09625 4.18411 4.18654 4.27323 4.36138 4.37321 4.41525 4.46430 4.55098 4.60632 4.68001 4.70404 4.76272 4.79349 4.85999 4.86448 4.89076 4.96465 4.98990 5.09597 5.19135 5.24699 5.31223 5.32129 5.40554 5.47501 5.51332 5.73428 5.98215 6.28547 6.44733 6.98274 7.05177 7.34485 8.12225 8.33724 9.29647 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.033801 B = 0.001414 C = 0.001400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.177727 B =19802.168603 C =19992.337642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.081 3.919 3 H 0.120 0.880 4 O -0.383 6.383 5 C 0.096 3.904 6 C -0.060 4.060 7 C -0.160 4.160 8 C 0.082 3.918 9 N -0.512 5.512 10 C 0.083 3.917 11 C -0.154 4.154 12 C 0.520 3.480 13 O -0.581 6.581 14 N -0.614 5.614 15 C 0.093 3.907 16 C -0.124 4.124 17 C -0.084 4.084 18 H 0.088 0.912 19 C -0.103 4.103 20 C 0.154 3.846 21 N -0.751 5.751 22 C -0.248 4.248 23 H 0.078 0.922 24 C -0.077 4.077 25 N -0.971 5.971 26 Si 0.974 3.026 27 H -0.275 1.275 28 H -0.296 1.296 29 H -0.278 1.278 30 C 0.110 3.890 31 H 0.048 0.952 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.148 0.852 37 H 0.174 0.826 38 H 0.179 0.821 39 H 0.159 0.841 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.080 0.920 44 H 0.065 0.935 45 H 0.053 0.947 46 H 0.016 0.984 47 H 0.032 0.968 48 H 0.372 0.628 49 H 0.251 0.749 50 H 0.068 0.932 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.887 5.690 -34.464 35.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.020 3.980 3 H 0.137 0.863 4 O -0.302 6.302 5 C 0.020 3.980 6 C -0.068 4.068 7 C -0.180 4.180 8 C -0.074 4.074 9 N -0.222 5.222 10 C -0.073 4.073 11 C -0.173 4.173 12 C 0.309 3.691 13 O -0.460 6.460 14 N -0.348 5.348 15 C -0.028 4.028 16 C -0.161 4.161 17 C -0.104 4.104 18 H 0.106 0.894 19 C -0.141 4.141 20 C 0.028 3.972 21 N -0.393 5.393 22 C -0.379 4.379 23 H 0.096 0.904 24 C -0.269 4.269 25 N -0.622 5.622 26 Si 0.803 3.197 27 H -0.201 1.201 28 H -0.223 1.223 29 H -0.205 1.205 30 C -0.013 4.013 31 H 0.067 0.933 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.098 0.902 36 H 0.166 0.834 37 H 0.191 0.809 38 H 0.196 0.804 39 H 0.177 0.823 40 H 0.112 0.888 41 H 0.115 0.885 42 H 0.118 0.882 43 H 0.099 0.901 44 H 0.084 0.916 45 H 0.072 0.928 46 H 0.034 0.966 47 H 0.050 0.950 48 H 0.204 0.796 49 H 0.060 0.940 50 H 0.086 0.914 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.205 4.582 -35.265 35.706 hybrid contribution 0.001 0.287 2.032 2.052 sum -3.205 4.869 -33.233 33.741 Atomic orbital electron populations 1.22266 0.91398 1.03288 1.05459 1.21966 0.96459 0.96660 0.82909 0.86264 1.88092 1.86998 1.35528 1.19627 1.21627 1.02038 0.91207 0.83083 1.20274 0.93916 0.97210 0.95403 1.22350 0.96499 0.99931 0.99226 1.23138 1.00594 0.93073 0.90582 1.67683 1.04417 1.20583 1.29544 1.23228 0.91874 0.95444 0.96795 1.22376 1.02166 0.97546 0.95252 1.20807 0.78421 0.85516 0.84375 1.90712 1.44788 1.24034 1.86458 1.48522 1.63176 1.18268 1.04839 1.22479 1.00846 0.82290 0.97199 1.22831 0.99254 1.00537 0.93508 1.22231 1.00683 0.95137 0.92358 0.89409 1.21497 1.01610 0.97882 0.93120 1.20800 0.97229 0.96092 0.83092 1.42643 1.79420 1.15592 1.01691 1.19640 1.35254 0.95917 0.87120 0.90446 1.25593 1.02858 0.98602 0.99838 1.69811 1.53427 1.20360 1.18585 0.85202 0.78109 0.78154 0.78243 1.20076 1.22278 1.20457 1.22238 1.00466 0.96090 0.82491 0.93264 0.88739 0.88511 0.88846 0.90162 0.83413 0.80903 0.80441 0.82307 0.88786 0.88463 0.88232 0.90084 0.91635 0.92781 0.96579 0.95028 0.79625 0.94050 0.91366 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 9.41 71.98 0.68 -0.93 16 2 C 0.08 1.17 2.53 29.85 0.08 1.25 16 3 H 0.12 0.88 7.55 -2.39 -0.02 0.86 16 4 O -0.38 -7.29 9.52 -130.14 -1.24 -8.52 16 5 C 0.10 1.04 5.92 71.23 0.42 1.46 16 6 C -0.06 -0.86 5.55 -19.67 -0.11 -0.96 16 7 C -0.16 -2.39 9.82 22.36 0.22 -2.17 16 8 C 0.08 1.32 11.18 84.68 0.95 2.27 16 9 N -0.51 -9.61 10.36 -195.85 -2.03 -11.64 16 10 C 0.08 1.20 11.18 84.68 0.95 2.15 16 11 C -0.15 -1.96 9.82 22.36 0.22 -1.74 16 12 C 0.52 12.37 7.17 87.66 0.63 13.00 16 13 O -0.58 -20.44 16.76 15.80 0.26 -20.17 16 14 N -0.61 -12.12 3.33 -811.81 -2.70 -14.82 16 15 C 0.09 1.07 6.16 86.73 0.53 1.60 16 16 C -0.12 -1.91 5.93 31.92 0.19 -1.72 16 17 C -0.08 -1.82 3.01 -9.26 -0.03 -1.85 16 18 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 19 C -0.10 -3.00 4.84 30.59 0.15 -2.85 16 20 C 0.15 5.74 6.16 86.38 0.53 6.27 16 21 N -0.75 -37.78 5.60 -343.46 -1.92 -39.70 16 22 C -0.25 -13.72 9.99 84.03 0.84 -12.88 16 23 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 24 C -0.08 -4.39 5.50 84.86 0.47 -3.93 16 25 N -0.97 -59.50 13.06 21.65 0.28 -59.22 16 26 Si 0.97 45.59 29.55 68.60 2.03 47.62 16 27 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 28 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 29 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 30 C 0.11 2.56 6.40 86.86 0.56 3.12 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.09 0.57 5.80 -2.39 -0.01 0.55 16 33 H 0.10 0.46 7.78 -2.39 -0.02 0.45 16 34 H 0.09 0.47 7.74 -2.39 -0.02 0.45 16 35 H 0.08 0.60 8.04 -2.39 -0.02 0.58 16 36 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 37 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 38 H 0.18 1.55 8.06 -2.91 -0.02 1.53 16 39 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 40 H 0.09 0.67 8.10 -2.39 -0.02 0.65 16 41 H 0.10 0.67 5.99 -2.38 -0.01 0.66 16 42 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.08 1.31 7.92 -2.38 -0.02 1.29 16 44 H 0.06 1.93 7.98 -2.39 -0.02 1.91 16 45 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.03 1.12 7.75 -2.39 -0.02 1.10 16 48 H 0.37 20.06 7.67 -92.71 -0.71 19.35 16 49 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 50 H 0.07 1.63 8.04 -2.39 -0.02 1.61 16 51 H 0.06 1.62 7.99 -2.39 -0.02 1.61 16 Total: -1.00 -81.58 417.50 2.16 -79.42 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: 0.21 Total: 24.95 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 7.26 Total: 2.09 kcal Atomic # 7 Polarization: -119.02 SS G_CDS: -6.37 Total: -125.39 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -0.97 Total: -28.70 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -81.58 2.16 -79.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501618390.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.385 kcal (2) G-P(sol) polarization free energy of solvation -81.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds