Wall clock time and date at job start Wed Apr 1 2020 04:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47363 * 2 1 4 4 C 1.50695 * 109.47661 * 120.00741 * 2 1 3 5 5 O 1.21283 * 120.00453 * 119.99615 * 4 2 1 6 6 N 1.34781 * 119.99710 * 299.99656 * 4 2 1 7 7 C 1.46493 * 120.00271 * 179.97438 * 6 4 2 8 8 C 1.52998 * 109.47388 * 184.97036 * 7 6 4 9 9 H 1.08997 * 109.47202 * 185.24861 * 8 7 6 10 10 C 1.53002 * 109.46991 * 65.25462 * 8 7 6 11 11 N 1.46898 * 109.47182 * 305.25417 * 8 7 6 12 12 C 1.46893 * 110.99943 * 303.79311 * 11 8 7 13 13 C 1.46902 * 110.99628 * 179.83968 * 11 8 7 14 14 C 1.50703 * 109.46904 * 189.99759 * 13 11 8 15 15 O 1.21293 * 119.99911 * 0.02562 * 14 13 11 16 16 N 1.34776 * 119.99967 * 179.97438 * 14 13 11 17 17 C 1.37103 * 119.99673 * 180.02562 * 16 14 13 18 18 H 1.07996 * 119.99887 * 0.02562 * 17 16 14 19 19 C 1.38949 * 119.99648 * 180.02562 * 17 16 14 20 20 N 1.31414 * 120.00149 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99973 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47037 * 89.99491 * 21 19 17 23 23 H 1.48496 * 109.47030 * 209.99552 * 21 19 17 24 24 H 1.48501 * 109.46679 * 330.00120 * 21 19 17 25 25 C 1.50711 * 109.46685 * 240.00614 * 2 1 3 26 26 C 1.38232 * 119.99586 * 299.72516 * 25 2 1 27 27 C 1.38238 * 119.99762 * 179.79495 * 26 25 2 28 28 C 1.38235 * 119.99763 * 0.43041 * 27 26 25 29 29 C 1.38237 * 120.00214 * 359.82582 * 28 27 26 30 30 C 1.38232 * 119.99885 * 359.96791 * 29 28 27 31 31 H 1.08993 * 109.47443 * 59.99370 * 1 2 3 32 32 H 1.08991 * 109.47078 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46714 * 299.99643 * 1 2 3 34 34 H 0.97004 * 120.00008 * 0.02562 * 6 4 2 35 35 H 1.09005 * 109.47302 * 64.96711 * 7 6 4 36 36 H 1.09002 * 109.47430 * 304.97670 * 7 6 4 37 37 H 1.09000 * 109.47093 * 300.00015 * 10 8 7 38 38 H 1.09000 * 109.47084 * 180.02562 * 10 8 7 39 39 H 1.09001 * 109.47023 * 60.00110 * 10 8 7 40 40 H 1.09003 * 109.47293 * 66.52076 * 12 11 8 41 41 H 1.09000 * 109.47045 * 186.52145 * 12 11 8 42 42 H 1.08997 * 109.47518 * 306.51973 * 12 11 8 43 43 H 1.08999 * 109.47445 * 310.00167 * 13 11 8 44 44 H 1.09005 * 109.47136 * 70.00369 * 13 11 8 45 45 H 0.96993 * 119.99909 * 0.02562 * 16 14 13 46 46 H 0.96999 * 119.99790 * 180.02562 * 20 19 17 47 47 H 1.07997 * 120.00565 * 359.97438 * 26 25 2 48 48 H 1.07997 * 120.00119 * 180.27794 * 27 26 25 49 49 H 1.07999 * 119.99847 * 179.83862 * 28 27 26 50 50 H 1.07999 * 120.00482 * 179.97438 * 29 28 27 51 51 H 1.08003 * 120.00350 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0325 -0.7105 1.2303 5 8 2.7297 -1.6966 1.1189 6 7 1.7070 -0.2501 2.4545 7 6 2.1949 -0.9411 3.6506 8 6 1.5856 -0.2956 4.8967 9 1 2.0191 -0.7474 5.7889 10 6 0.0716 -0.5170 4.8973 11 7 1.8696 1.1457 4.8903 12 6 3.3140 1.3971 4.7988 13 6 1.2951 1.8007 6.0730 14 6 1.3892 3.2964 5.9143 15 8 1.8857 3.7700 4.9141 16 7 0.9209 4.1077 6.8832 17 6 1.0062 5.4684 6.7385 18 1 1.4482 5.8901 5.8479 19 6 0.5238 6.3048 7.7377 20 7 -0.0145 5.7917 8.8212 21 14 0.6392 8.1588 7.5403 22 1 -0.5868 8.6626 6.8708 23 1 0.7688 8.7918 8.8774 24 1 1.8275 8.4957 6.7158 25 6 2.0323 -0.7103 -1.2307 26 6 1.7029 -2.0354 -1.4466 27 6 2.1601 -2.6858 -2.5775 28 6 2.9539 -2.0136 -3.4879 29 6 3.2877 -0.6900 -3.2693 30 6 2.8270 -0.0385 -2.1406 31 1 -0.3634 0.5139 -0.8898 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.1490 0.5383 2.5436 35 1 3.2813 -0.8651 3.6963 36 1 1.9057 -1.9911 3.6070 37 1 -0.3620 -0.0652 4.0052 38 1 -0.3625 -0.0568 5.7849 39 1 -0.1391 -1.5865 4.9022 40 1 3.6800 1.0637 3.8277 41 1 3.5049 2.4643 4.9122 42 1 3.8288 0.8500 5.5885 43 1 0.2493 1.5114 6.1765 44 1 1.8465 1.4943 6.9619 45 1 0.5236 3.7289 7.6829 46 1 -0.3516 6.3756 9.5185 47 1 1.0860 -2.5617 -0.7333 48 1 1.8991 -3.7197 -2.7485 49 1 3.3132 -2.5225 -4.3702 50 1 3.9082 -0.1650 -3.9804 51 1 3.0873 0.9957 -1.9699 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506042899.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:22 Heat of formation + Delta-G solvation = -43.385386 kcal Electronic energy + Delta-G solvation = -30472.407348 eV Core-core repulsion = 26371.679237 eV Total energy + Delta-G solvation = -4100.728112 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.42921 -39.20907 -38.53198 -37.21916 -34.41025 -34.26430 -33.73449 -31.28148 -31.09851 -31.01501 -29.54564 -28.44043 -26.27861 -24.93630 -24.72100 -23.67502 -22.70660 -21.96919 -20.00679 -19.98709 -19.10057 -17.87786 -17.27166 -16.98410 -16.56266 -15.88283 -15.71189 -15.24663 -15.16329 -14.78782 -14.70038 -14.50294 -14.08625 -13.91261 -13.77607 -13.66296 -13.42664 -13.38422 -13.17082 -12.97216 -12.55062 -12.39711 -12.25095 -12.20929 -11.92532 -11.74806 -11.64185 -11.50375 -11.35845 -11.23890 -11.08994 -11.03887 -10.94871 -10.63038 -10.42292 -10.24781 -9.75756 -9.50443 -9.00711 -8.95164 -8.83493 -8.49309 -8.02299 -7.93512 -6.44815 -3.85656 1.22199 1.32724 2.67181 3.15210 3.19758 3.24286 3.29687 3.73420 3.86548 3.92578 4.20978 4.39792 4.60849 4.68787 4.85664 4.86373 4.92545 4.95470 5.03281 5.08611 5.13126 5.19680 5.25340 5.35788 5.41499 5.48082 5.52116 5.56446 5.65947 5.66335 5.69660 5.76545 5.84794 5.87223 5.91516 5.94717 5.95768 5.98278 6.17636 6.26129 6.34114 6.39968 6.46374 6.50747 6.52565 6.88784 7.19249 7.30869 7.52157 7.61401 8.03143 8.27808 8.58350 9.15048 9.51304 10.02784 10.72814 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016198 B = 0.002068 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.167263 B =13537.885241 C =14521.840884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.074 4.074 3 H 0.107 0.893 4 C 0.516 3.484 5 O -0.543 6.543 6 N -0.711 5.711 7 C 0.130 3.870 8 C 0.064 3.936 9 H 0.054 0.946 10 C -0.148 4.148 11 N -0.513 5.513 12 C 0.021 3.979 13 C 0.041 3.959 14 C 0.444 3.556 15 O -0.578 6.578 16 N -0.564 5.564 17 C -0.298 4.298 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.901 5.901 21 Si 0.929 3.071 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.270 1.270 25 C -0.063 4.063 26 C -0.083 4.083 27 C -0.124 4.124 28 C -0.123 4.123 29 C -0.124 4.124 30 C -0.112 4.112 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.413 0.587 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.094 0.906 42 H 0.014 0.986 43 H 0.093 0.907 44 H 0.047 0.953 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.118 0.882 48 H 0.119 0.881 49 H 0.118 0.882 50 H 0.120 0.880 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.472 -16.107 -15.261 22.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.095 4.095 3 H 0.125 0.875 4 C 0.302 3.698 5 O -0.420 6.420 6 N -0.364 5.364 7 C 0.006 3.994 8 C -0.045 4.045 9 H 0.072 0.928 10 C -0.206 4.206 11 N -0.238 5.238 12 C -0.126 4.126 13 C -0.090 4.090 14 C 0.229 3.771 15 O -0.462 6.462 16 N -0.201 5.201 17 C -0.428 4.428 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.543 5.543 21 Si 0.757 3.243 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.194 1.194 25 C -0.064 4.064 26 C -0.101 4.101 27 C -0.142 4.142 28 C -0.141 4.141 29 C -0.142 4.142 30 C -0.130 4.130 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.250 0.750 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.113 0.887 42 H 0.033 0.967 43 H 0.111 0.889 44 H 0.065 0.935 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.136 0.864 48 H 0.137 0.863 49 H 0.136 0.864 50 H 0.138 0.862 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.008 -16.189 -16.227 22.944 hybrid contribution -0.018 0.752 1.429 1.615 sum 0.991 -15.437 -14.798 21.407 Atomic orbital electron populations 1.21789 0.91899 1.02838 1.03252 1.20305 0.97840 1.00524 0.90833 0.87543 1.20421 0.80273 0.84561 0.84543 1.90701 1.37955 1.26507 1.86840 1.45885 1.53557 1.32304 1.04656 1.21349 0.98774 0.95801 0.83467 1.21977 0.96884 0.89174 0.96493 0.92847 1.21917 0.94252 1.01336 1.03059 1.61622 1.14270 1.07996 1.39957 1.22543 0.86223 1.04168 0.99707 1.21952 1.00889 0.94854 0.91341 1.19721 0.84784 0.87268 0.85307 1.90491 1.48935 1.76450 1.30319 1.41872 1.53356 1.06491 1.18357 1.19682 1.37350 0.80729 1.05033 0.87926 1.25260 0.96831 1.00716 0.95156 1.69610 1.40309 1.36338 1.08023 0.85866 0.78866 0.82133 0.77477 1.20393 1.20963 1.19446 1.19336 0.97976 0.94371 0.94705 1.20888 0.99057 0.93804 0.96401 1.21098 0.98641 0.99766 0.94742 1.21116 0.98679 0.94887 0.99399 1.21069 1.00434 0.95019 0.97711 1.21049 0.97490 0.99964 0.94504 0.91201 0.92004 0.91308 0.75003 0.91713 0.91078 0.91649 0.91818 0.92180 0.91915 0.88724 0.96723 0.88937 0.93492 0.77537 0.91879 0.86435 0.86312 0.86393 0.86199 0.86058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 8.90 37.16 0.33 -0.85 16 2 C -0.07 -0.76 2.90 -92.92 -0.27 -1.03 16 3 H 0.11 1.03 7.88 -51.93 -0.41 0.62 16 4 C 0.52 6.52 7.02 -10.99 -0.08 6.44 16 5 O -0.54 -8.61 15.08 5.55 0.08 -8.53 16 6 N -0.71 -8.27 4.97 -60.30 -0.30 -8.57 16 7 C 0.13 1.50 4.62 -4.05 -0.02 1.48 16 8 C 0.06 0.73 2.32 -67.71 -0.16 0.57 16 9 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 10 C -0.15 -1.50 8.86 37.16 0.33 -1.17 16 11 N -0.51 -7.56 3.73 -236.33 -0.88 -8.44 16 12 C 0.02 0.33 8.58 60.06 0.52 0.84 16 13 C 0.04 0.67 5.26 -4.97 -0.03 0.64 16 14 C 0.44 9.87 7.41 -10.98 -0.08 9.79 16 15 O -0.58 -14.64 13.98 5.55 0.08 -14.56 16 16 N -0.56 -13.74 5.29 -10.96 -0.06 -13.79 16 17 C -0.30 -8.07 9.68 -14.93 -0.14 -8.21 16 18 H 0.10 2.91 7.16 -52.49 -0.38 2.54 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 20 N -0.90 -24.01 13.05 55.50 0.72 -23.29 16 21 Si 0.93 20.65 29.55 -169.99 -5.02 15.63 16 22 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 25 C -0.06 -0.71 4.40 -104.62 -0.46 -1.17 16 26 C -0.08 -0.93 7.92 -39.58 -0.31 -1.25 16 27 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 28 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 29 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 30 C -0.11 -1.17 9.67 -39.58 -0.38 -1.55 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.51 7.41 -51.93 -0.38 0.13 16 33 H 0.07 0.55 7.56 -51.93 -0.39 0.15 16 34 H 0.41 4.79 6.84 -40.82 -0.28 4.51 16 35 H 0.06 0.81 6.81 -51.93 -0.35 0.46 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.68 7.31 -51.93 -0.38 0.30 16 38 H 0.06 0.66 6.19 -51.93 -0.32 0.34 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.92 6.75 -51.93 -0.35 0.57 16 41 H 0.09 1.80 5.79 -51.93 -0.30 1.50 16 42 H 0.01 0.20 8.12 -51.93 -0.42 -0.22 16 43 H 0.09 1.36 5.82 -51.93 -0.30 1.06 16 44 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 45 H 0.39 9.16 7.90 -40.82 -0.32 8.84 16 46 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 47 H 0.12 1.29 7.52 -52.49 -0.39 0.89 16 48 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 49 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 50 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 51 H 0.12 1.08 7.95 -52.48 -0.42 0.66 16 LS Contribution 410.32 15.07 6.18 6.18 Total: -1.00 -31.78 410.32 -9.16 -40.94 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: -7.92 Total: 14.19 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -2.05 Total: 0.24 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: -0.52 Total: -54.10 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: 0.16 Total: -23.09 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -31.78 -9.16 -40.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506042899.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.444 kcal (2) G-P(sol) polarization free energy of solvation -31.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds