Wall clock time and date at job start Wed Apr 1 2020 04:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47363 * 2 1 4 4 C 1.50695 * 109.47661 * 120.00741 * 2 1 3 5 5 O 1.21283 * 120.00453 * 119.99615 * 4 2 1 6 6 N 1.34781 * 119.99710 * 299.99656 * 4 2 1 7 7 C 1.46493 * 120.00271 * 179.97438 * 6 4 2 8 8 C 1.52998 * 109.47388 * 184.97036 * 7 6 4 9 9 H 1.08997 * 109.47202 * 185.24861 * 8 7 6 10 10 C 1.53002 * 109.46991 * 65.25462 * 8 7 6 11 11 N 1.46898 * 109.47182 * 305.25417 * 8 7 6 12 12 C 1.46893 * 110.99943 * 303.79311 * 11 8 7 13 13 C 1.46902 * 110.99628 * 179.83968 * 11 8 7 14 14 C 1.50703 * 109.46904 * 189.99759 * 13 11 8 15 15 O 1.21293 * 119.99911 * 0.02562 * 14 13 11 16 16 N 1.34776 * 119.99967 * 179.97438 * 14 13 11 17 17 C 1.37103 * 119.99673 * 180.02562 * 16 14 13 18 18 H 1.07996 * 119.99887 * 0.02562 * 17 16 14 19 19 C 1.38949 * 119.99648 * 180.02562 * 17 16 14 20 20 N 1.31414 * 120.00149 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99973 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47037 * 89.99491 * 21 19 17 23 23 H 1.48496 * 109.47030 * 209.99552 * 21 19 17 24 24 H 1.48501 * 109.46679 * 330.00120 * 21 19 17 25 25 C 1.50711 * 109.46685 * 240.00614 * 2 1 3 26 26 C 1.38232 * 119.99586 * 299.72516 * 25 2 1 27 27 C 1.38238 * 119.99762 * 179.79495 * 26 25 2 28 28 C 1.38235 * 119.99763 * 0.43041 * 27 26 25 29 29 C 1.38237 * 120.00214 * 359.82582 * 28 27 26 30 30 C 1.38232 * 119.99885 * 359.96791 * 29 28 27 31 31 H 1.08993 * 109.47443 * 59.99370 * 1 2 3 32 32 H 1.08991 * 109.47078 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46714 * 299.99643 * 1 2 3 34 34 H 0.97004 * 120.00008 * 0.02562 * 6 4 2 35 35 H 1.09005 * 109.47302 * 64.96711 * 7 6 4 36 36 H 1.09002 * 109.47430 * 304.97670 * 7 6 4 37 37 H 1.09000 * 109.47093 * 300.00015 * 10 8 7 38 38 H 1.09000 * 109.47084 * 180.02562 * 10 8 7 39 39 H 1.09001 * 109.47023 * 60.00110 * 10 8 7 40 40 H 1.09003 * 109.47293 * 66.52076 * 12 11 8 41 41 H 1.09000 * 109.47045 * 186.52145 * 12 11 8 42 42 H 1.08997 * 109.47518 * 306.51973 * 12 11 8 43 43 H 1.08999 * 109.47445 * 310.00167 * 13 11 8 44 44 H 1.09005 * 109.47136 * 70.00369 * 13 11 8 45 45 H 0.96993 * 119.99909 * 0.02562 * 16 14 13 46 46 H 0.96999 * 119.99790 * 180.02562 * 20 19 17 47 47 H 1.07997 * 120.00565 * 359.97438 * 26 25 2 48 48 H 1.07997 * 120.00119 * 180.27794 * 27 26 25 49 49 H 1.07999 * 119.99847 * 179.83862 * 28 27 26 50 50 H 1.07999 * 120.00482 * 179.97438 * 29 28 27 51 51 H 1.08003 * 120.00350 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0325 -0.7105 1.2303 5 8 2.7297 -1.6966 1.1189 6 7 1.7070 -0.2501 2.4545 7 6 2.1949 -0.9411 3.6506 8 6 1.5856 -0.2956 4.8967 9 1 2.0191 -0.7474 5.7889 10 6 0.0716 -0.5170 4.8973 11 7 1.8696 1.1457 4.8903 12 6 3.3140 1.3971 4.7988 13 6 1.2951 1.8007 6.0730 14 6 1.3892 3.2964 5.9143 15 8 1.8857 3.7700 4.9141 16 7 0.9209 4.1077 6.8832 17 6 1.0062 5.4684 6.7385 18 1 1.4482 5.8901 5.8479 19 6 0.5238 6.3048 7.7377 20 7 -0.0145 5.7917 8.8212 21 14 0.6392 8.1588 7.5403 22 1 -0.5868 8.6626 6.8708 23 1 0.7688 8.7918 8.8774 24 1 1.8275 8.4957 6.7158 25 6 2.0323 -0.7103 -1.2307 26 6 1.7029 -2.0354 -1.4466 27 6 2.1601 -2.6858 -2.5775 28 6 2.9539 -2.0136 -3.4879 29 6 3.2877 -0.6900 -3.2693 30 6 2.8270 -0.0385 -2.1406 31 1 -0.3634 0.5139 -0.8898 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.1490 0.5383 2.5436 35 1 3.2813 -0.8651 3.6963 36 1 1.9057 -1.9911 3.6070 37 1 -0.3620 -0.0652 4.0052 38 1 -0.3625 -0.0568 5.7849 39 1 -0.1391 -1.5865 4.9022 40 1 3.6800 1.0637 3.8277 41 1 3.5049 2.4643 4.9122 42 1 3.8288 0.8500 5.5885 43 1 0.2493 1.5114 6.1765 44 1 1.8465 1.4943 6.9619 45 1 0.5236 3.7289 7.6829 46 1 -0.3516 6.3756 9.5185 47 1 1.0860 -2.5617 -0.7333 48 1 1.8991 -3.7197 -2.7485 49 1 3.3132 -2.5225 -4.3702 50 1 3.9082 -0.1650 -3.9804 51 1 3.0873 0.9957 -1.9699 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506042899.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:21 Heat of formation + Delta-G solvation = -63.906074 kcal Electronic energy + Delta-G solvation = -30473.297192 eV Core-core repulsion = 26371.679237 eV Total energy + Delta-G solvation = -4101.617955 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.36261 -40.49452 -39.64738 -38.55945 -35.97707 -35.30830 -34.98388 -33.23449 -32.10461 -31.75885 -30.34290 -29.72896 -27.49088 -26.45275 -25.56078 -25.02905 -23.46765 -22.82256 -21.28521 -20.89282 -20.61268 -19.78949 -18.25794 -17.86246 -17.76406 -17.11048 -16.73425 -16.56512 -16.32420 -16.10033 -15.93212 -15.66307 -15.32809 -15.20349 -15.10765 -14.59716 -14.58413 -14.27393 -14.14396 -13.87266 -13.75598 -13.53210 -13.34207 -13.16343 -13.10442 -13.00798 -12.90172 -12.72530 -12.49650 -12.39926 -12.31606 -12.27826 -12.11936 -11.84602 -11.78733 -11.66795 -11.41896 -10.75968 -10.22789 -9.97597 -9.95547 -9.75009 -9.59966 -9.23217 -8.43696 -5.91430 0.45946 0.56177 1.39151 1.43055 1.54980 1.68778 2.10517 2.25963 2.31547 2.75206 2.97780 3.23702 3.45286 3.60917 3.72855 3.83159 4.01832 4.10102 4.15978 4.21779 4.25514 4.30746 4.34539 4.36409 4.40812 4.54310 4.59778 4.63093 4.64630 4.69418 4.71450 4.80760 4.84199 4.93735 4.95140 5.03416 5.13651 5.18276 5.19511 5.24030 5.36924 5.44125 5.51379 5.60395 5.65601 5.73111 5.88879 6.08033 6.15478 6.19951 6.63913 6.64658 7.17047 7.30139 7.61606 8.17325 8.73595 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016198 B = 0.002068 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.167263 B =13537.885241 C =14521.840884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.071 4.071 3 H 0.111 0.889 4 C 0.516 3.484 5 O -0.578 6.578 6 N -0.705 5.705 7 C 0.133 3.867 8 C 0.070 3.930 9 H 0.069 0.931 10 C -0.146 4.146 11 N -0.523 5.523 12 C 0.030 3.970 13 C 0.054 3.946 14 C 0.444 3.556 15 O -0.611 6.611 16 N -0.576 5.576 17 C -0.327 4.327 18 H 0.079 0.921 19 C -0.014 4.014 20 N -0.921 5.921 21 Si 0.990 3.010 22 H -0.271 1.271 23 H -0.273 1.273 24 H -0.274 1.274 25 C -0.079 4.079 26 C -0.101 4.101 27 C -0.134 4.134 28 C -0.128 4.128 29 C -0.130 4.130 30 C -0.128 4.128 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.414 0.586 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.055 0.945 42 H 0.030 0.970 43 H 0.117 0.883 44 H 0.064 0.936 45 H 0.395 0.605 46 H 0.276 0.724 47 H 0.112 0.888 48 H 0.136 0.864 49 H 0.142 0.858 50 H 0.141 0.859 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.046 -16.896 -15.572 22.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.092 4.092 3 H 0.129 0.871 4 C 0.303 3.697 5 O -0.458 6.458 6 N -0.357 5.357 7 C 0.008 3.992 8 C -0.038 4.038 9 H 0.087 0.913 10 C -0.203 4.203 11 N -0.248 5.248 12 C -0.118 4.118 13 C -0.077 4.077 14 C 0.231 3.769 15 O -0.497 6.497 16 N -0.214 5.214 17 C -0.457 4.457 18 H 0.097 0.903 19 C -0.214 4.214 20 N -0.562 5.562 21 Si 0.814 3.186 22 H -0.197 1.197 23 H -0.198 1.198 24 H -0.199 1.199 25 C -0.079 4.079 26 C -0.119 4.119 27 C -0.152 4.152 28 C -0.146 4.146 29 C -0.148 4.148 30 C -0.146 4.146 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.251 0.749 35 H 0.072 0.928 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.048 0.952 43 H 0.134 0.866 44 H 0.082 0.918 45 H 0.229 0.771 46 H 0.085 0.915 47 H 0.130 0.870 48 H 0.154 0.846 49 H 0.160 0.840 50 H 0.159 0.841 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.472 -16.991 -16.522 23.704 hybrid contribution 0.192 0.919 1.463 1.738 sum 0.664 -16.072 -15.060 22.035 Atomic orbital electron populations 1.21765 0.90450 1.03061 1.03933 1.20319 0.98998 1.00248 0.89611 0.87060 1.20791 0.79578 0.84089 0.85250 1.90679 1.39616 1.28133 1.87326 1.45886 1.53121 1.32102 1.04630 1.21349 0.98153 0.96262 0.83398 1.22025 0.98080 0.86747 0.96941 0.91345 1.21920 0.92810 1.02723 1.02888 1.61569 1.13654 1.10252 1.39325 1.22355 0.87127 1.01739 1.00570 1.21816 1.02816 0.90428 0.92629 1.20754 0.82557 0.89632 0.83945 1.90474 1.49778 1.77881 1.31558 1.41939 1.54352 1.05970 1.19151 1.19620 1.38739 0.82456 1.04902 0.90302 1.25986 0.96157 1.04573 0.94669 1.69670 1.40490 1.37693 1.08375 0.84973 0.78700 0.77240 0.77711 1.19680 1.19839 1.19873 1.19502 0.98584 0.94676 0.95185 1.20987 0.99762 0.94097 0.97021 1.21389 0.98574 1.00713 0.94501 1.21455 0.98131 0.94974 0.99990 1.21402 1.00294 0.95365 0.97751 1.21299 0.97665 1.00678 0.94942 0.90298 0.92004 0.90788 0.74853 0.92791 0.90203 0.92029 0.91734 0.90172 0.91453 0.92587 0.95179 0.86553 0.91804 0.77131 0.91461 0.86958 0.84642 0.83999 0.84110 0.85108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 8.90 71.98 0.64 -1.53 16 2 C -0.07 -1.44 2.90 -12.28 -0.04 -1.48 16 3 H 0.11 2.12 7.88 -2.39 -0.02 2.10 16 4 C 0.52 12.89 7.02 87.65 0.62 13.50 16 5 O -0.58 -18.38 15.08 -3.04 -0.05 -18.42 16 6 N -0.71 -15.81 4.97 -463.07 -2.30 -18.11 16 7 C 0.13 2.85 4.62 86.38 0.40 3.25 16 8 C 0.07 1.44 2.32 44.92 0.10 1.54 16 9 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 10 C -0.15 -2.54 8.86 71.98 0.64 -1.90 16 11 N -0.52 -14.67 3.73 -901.62 -3.36 -18.03 16 12 C 0.03 0.92 8.58 127.69 1.10 2.01 16 13 C 0.05 1.69 5.26 85.56 0.45 2.14 16 14 C 0.44 19.82 7.41 87.66 0.65 20.47 16 15 O -0.61 -31.65 13.98 -3.07 -0.04 -31.69 16 16 N -0.58 -28.38 5.29 -306.98 -1.62 -30.00 16 17 C -0.33 -18.06 9.68 84.04 0.81 -17.25 16 18 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 19 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 20 N -0.92 -48.79 13.05 21.66 0.28 -48.50 16 21 Si 0.99 42.27 29.55 68.60 2.03 44.30 16 22 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 23 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 24 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 25 C -0.08 -1.75 4.40 -19.86 -0.09 -1.84 16 26 C -0.10 -2.24 7.92 22.27 0.18 -2.06 16 27 C -0.13 -2.57 10.05 22.27 0.22 -2.35 16 28 C -0.13 -2.20 10.05 22.27 0.22 -1.98 16 29 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 30 C -0.13 -2.60 9.67 22.27 0.22 -2.39 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 0.99 7.41 -2.39 -0.02 0.97 16 33 H 0.07 1.10 7.56 -2.39 -0.02 1.08 16 34 H 0.41 9.22 6.84 -92.71 -0.63 8.58 16 35 H 0.05 1.30 6.81 -2.38 -0.02 1.28 16 36 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.06 1.13 7.31 -2.39 -0.02 1.12 16 38 H 0.06 1.13 6.19 -2.39 -0.01 1.12 16 39 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.07 1.95 6.75 -2.39 -0.02 1.94 16 41 H 0.06 2.16 5.79 -2.39 -0.01 2.15 16 42 H 0.03 0.80 8.12 -2.39 -0.02 0.78 16 43 H 0.12 3.14 5.82 -2.39 -0.01 3.13 16 44 H 0.06 1.83 8.12 -2.38 -0.02 1.81 16 45 H 0.40 18.54 7.90 -92.71 -0.73 17.81 16 46 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 47 H 0.11 2.51 7.52 -2.91 -0.02 2.48 16 48 H 0.14 2.01 8.06 -2.91 -0.02 1.98 16 49 H 0.14 1.68 8.06 -2.91 -0.02 1.65 16 50 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 51 H 0.13 2.27 7.95 -2.91 -0.02 2.25 16 Total: -1.00 -69.40 410.32 1.33 -68.07 By element: Atomic # 1 Polarization: 45.06 SS G_CDS: -0.42 Total: 44.65 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: 6.81 Total: 7.75 kcal Atomic # 7 Polarization: -107.64 SS G_CDS: -7.01 Total: -114.65 kcal Atomic # 8 Polarization: -50.03 SS G_CDS: -0.09 Total: -50.12 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -69.40 1.33 -68.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506042899.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.165 kcal (2) G-P(sol) polarization free energy of solvation -69.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds