Wall clock time and date at job start Wed Apr 1 2020 04:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47000 * 2 1 4 4 C 1.52996 * 109.47166 * 239.99922 * 2 1 3 5 5 N 1.46497 * 109.47216 * 184.99809 * 4 2 1 6 6 C 1.34779 * 119.99787 * 180.02562 * 5 4 2 7 7 O 1.21281 * 120.00470 * 0.02562 * 6 5 4 8 8 C 1.50707 * 119.99698 * 180.02562 * 6 5 4 9 9 H 1.09002 * 109.46682 * 60.00290 * 8 6 5 10 10 C 1.52995 * 109.47053 * 300.00235 * 8 6 5 11 11 C 1.50696 * 109.47115 * 179.97438 * 8 6 5 12 12 C 1.38230 * 120.00309 * 240.00173 * 11 8 6 13 13 C 1.38235 * 120.00326 * 179.97438 * 12 11 8 14 14 C 1.38234 * 119.99814 * 359.97438 * 13 12 11 15 15 C 1.38240 * 120.00061 * 0.07178 * 14 13 12 16 16 C 1.38234 * 120.00081 * 359.88514 * 15 14 13 17 17 N 1.46901 * 109.47156 * 120.00247 * 2 1 3 18 18 C 1.46897 * 111.00204 * 58.95192 * 17 2 1 19 19 C 1.46906 * 110.99771 * 294.99969 * 17 2 1 20 20 C 1.50702 * 109.47165 * 190.00151 * 19 17 2 21 21 O 1.21293 * 119.99832 * 359.97438 * 20 19 17 22 22 N 1.34775 * 119.99993 * 180.02562 * 20 19 17 23 23 C 1.37093 * 119.99599 * 179.97438 * 22 20 19 24 24 H 1.08005 * 120.00587 * 359.97438 * 23 22 20 25 25 C 1.38953 * 119.99721 * 179.97438 * 23 22 20 26 26 N 1.31412 * 120.00200 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 119.99972 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47276 * 89.99794 * 27 25 23 29 29 H 1.48502 * 109.47304 * 209.99857 * 27 25 23 30 30 H 1.48500 * 109.47203 * 330.00215 * 27 25 23 31 31 H 1.08996 * 109.47000 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46991 * 300.00050 * 1 2 3 33 33 H 1.08993 * 109.47195 * 60.00031 * 1 2 3 34 34 H 1.09002 * 109.47004 * 64.99968 * 4 2 1 35 35 H 1.09001 * 109.47095 * 305.00280 * 4 2 1 36 36 H 0.97003 * 120.00059 * 0.02562 * 5 4 2 37 37 H 1.09001 * 109.47529 * 60.00004 * 10 8 6 38 38 H 1.08999 * 109.47147 * 180.02562 * 10 8 6 39 39 H 1.09002 * 109.46963 * 299.99877 * 10 8 6 40 40 H 1.08000 * 120.00376 * 359.97438 * 12 11 8 41 41 H 1.08000 * 120.00616 * 179.72578 * 13 12 11 42 42 H 1.08001 * 120.00299 * 179.97438 * 14 13 12 43 43 H 1.08005 * 120.00107 * 179.97438 * 15 14 13 44 44 H 1.07999 * 120.00147 * 180.10835 * 16 15 14 45 45 H 1.09000 * 109.47070 * 59.99719 * 18 17 2 46 46 H 1.09004 * 109.47207 * 180.02562 * 18 17 2 47 47 H 1.09003 * 109.47156 * 300.00128 * 18 17 2 48 48 H 1.09001 * 109.47144 * 309.99919 * 19 17 2 49 49 H 1.08995 * 109.47483 * 70.00201 * 19 17 2 50 50 H 0.96994 * 120.00109 * 359.97438 * 22 20 19 51 51 H 0.96998 * 119.99791 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.8263 -1.1906 6 6 4.1731 -1.4283 -2.1912 7 8 3.5701 -1.8825 -3.1404 8 6 5.6750 -1.5369 -2.1306 9 1 5.9629 -2.1005 -1.2432 10 6 6.2854 -0.1355 -2.0650 11 6 6.1773 -2.2472 -3.3611 12 6 6.8843 -3.4285 -3.2370 13 6 7.3446 -4.0803 -4.3658 14 6 7.0975 -3.5510 -5.6186 15 6 6.3913 -2.3691 -5.7427 16 6 5.9302 -1.7178 -4.6140 17 7 2.0197 -0.6925 1.1994 18 6 1.5284 -2.0761 1.2459 19 6 1.6487 0.0391 2.4181 20 6 2.3679 -0.5571 3.6006 21 8 3.1156 -1.4993 3.4436 22 7 2.1795 -0.0442 4.8326 23 6 2.8334 -0.5871 5.9083 24 1 3.4992 -1.4260 5.7687 25 6 2.6397 -0.0579 7.1785 26 7 1.8300 0.9631 7.3485 27 14 3.5312 -0.7971 8.6442 28 1 4.8352 -0.1108 8.8280 29 1 2.7042 -0.6239 9.8654 30 1 3.7629 -2.2441 8.4044 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.7517 -0.1583 -2.1369 35 1 1.6054 -1.7198 -1.2951 36 1 3.9824 -0.4627 -0.4316 37 1 5.9220 0.3779 -1.1748 38 1 7.3717 -0.2140 -2.0217 39 1 5.9974 0.4281 -2.9525 40 1 7.0771 -3.8423 -2.2583 41 1 7.9008 -5.0010 -4.2687 42 1 7.4575 -4.0600 -6.5006 43 1 6.1986 -1.9553 -6.7215 44 1 5.3770 -0.7953 -4.7109 45 1 1.8762 -2.6150 0.3647 46 1 1.9054 -2.5656 2.1440 47 1 0.4385 -2.0742 1.2639 48 1 1.9298 1.0870 2.3125 49 1 0.5723 -0.0345 2.5727 50 1 1.5814 0.7089 4.9581 51 1 1.6945 1.3322 8.2352 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506042900.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:24 Heat of formation + Delta-G solvation = -65.597761 kcal Electronic energy + Delta-G solvation = -30381.586144 eV Core-core repulsion = 26279.894832 eV Total energy + Delta-G solvation = -4101.691312 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.34370 -40.53091 -39.63438 -38.66959 -35.95745 -35.33465 -34.98994 -33.23586 -32.03824 -31.76093 -30.25277 -29.35449 -27.44440 -27.00066 -25.63044 -25.10073 -23.46056 -22.64569 -21.39821 -20.82179 -20.46745 -19.77522 -18.21609 -17.83870 -17.72604 -17.07907 -16.97066 -16.55935 -16.28478 -16.22983 -15.84045 -15.76826 -15.45445 -15.13468 -14.91527 -14.59755 -14.54088 -14.18436 -14.14335 -13.88044 -13.71853 -13.63287 -13.43386 -13.16221 -13.06869 -12.98946 -12.87623 -12.78097 -12.49906 -12.42375 -12.36328 -12.25730 -12.11638 -11.85190 -11.79746 -11.72530 -11.41283 -10.75684 -10.23599 -9.98150 -9.95481 -9.75319 -9.60080 -9.17031 -8.43593 -5.91205 0.45745 0.55894 1.39114 1.43029 1.54883 1.68714 2.11111 2.26000 2.31313 2.77658 2.97406 3.24002 3.47321 3.60960 3.75496 3.81711 4.06150 4.11364 4.15960 4.25389 4.27819 4.30385 4.31794 4.36251 4.37137 4.55935 4.58903 4.63358 4.64544 4.67956 4.69602 4.77980 4.84838 4.85848 4.94484 5.02228 5.13492 5.19280 5.20484 5.24017 5.31017 5.44314 5.52700 5.60272 5.65318 5.72946 5.89959 6.08471 6.15291 6.21105 6.64147 6.65089 7.17442 7.30329 7.62114 8.18095 8.73672 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014175 B = 0.002126 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.877362 B =13167.638005 C =14481.623260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.071 3.929 3 H 0.106 0.894 4 C 0.134 3.866 5 N -0.707 5.707 6 C 0.516 3.484 7 O -0.578 6.578 8 C -0.071 4.071 9 H 0.111 0.889 10 C -0.134 4.134 11 C -0.079 4.079 12 C -0.128 4.128 13 C -0.130 4.130 14 C -0.128 4.128 15 C -0.134 4.134 16 C -0.101 4.101 17 N -0.520 5.520 18 C 0.027 3.973 19 C 0.058 3.942 20 C 0.443 3.557 21 O -0.612 6.612 22 N -0.576 5.576 23 C -0.327 4.327 24 H 0.078 0.922 25 C -0.014 4.014 26 N -0.921 5.921 27 Si 0.989 3.011 28 H -0.271 1.271 29 H -0.273 1.273 30 H -0.274 1.274 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.053 0.947 36 H 0.414 0.586 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.061 0.939 40 H 0.130 0.870 41 H 0.141 0.859 42 H 0.143 0.857 43 H 0.136 0.864 44 H 0.113 0.887 45 H 0.065 0.935 46 H 0.055 0.945 47 H 0.034 0.966 48 H 0.113 0.887 49 H 0.068 0.932 50 H 0.395 0.605 51 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.458 0.021 -22.099 22.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.037 4.037 3 H 0.124 0.876 4 C 0.010 3.990 5 N -0.358 5.358 6 C 0.303 3.697 7 O -0.458 6.458 8 C -0.092 4.092 9 H 0.129 0.871 10 C -0.192 4.192 11 C -0.080 4.080 12 C -0.146 4.146 13 C -0.148 4.148 14 C -0.145 4.145 15 C -0.151 4.151 16 C -0.119 4.119 17 N -0.244 5.244 18 C -0.121 4.121 19 C -0.073 4.073 20 C 0.230 3.770 21 O -0.498 6.498 22 N -0.214 5.214 23 C -0.457 4.457 24 H 0.096 0.904 25 C -0.214 4.214 26 N -0.562 5.562 27 Si 0.813 3.187 28 H -0.197 1.197 29 H -0.198 1.198 30 H -0.199 1.199 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.071 0.929 36 H 0.251 0.749 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.148 0.852 41 H 0.159 0.841 42 H 0.160 0.840 43 H 0.154 0.846 44 H 0.131 0.869 45 H 0.083 0.917 46 H 0.073 0.927 47 H 0.052 0.948 48 H 0.131 0.869 49 H 0.085 0.915 50 H 0.229 0.771 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.967 -0.824 -22.710 23.262 hybrid contribution -0.823 0.095 1.507 1.720 sum 4.144 -0.728 -21.203 21.617 Atomic orbital electron populations 1.22372 0.95303 1.02749 1.03762 1.22089 0.94477 0.98858 0.88298 0.87566 1.21372 0.80161 1.00291 0.97219 1.45863 1.07785 1.58866 1.23329 1.20798 0.90349 0.76788 0.81803 1.90676 1.71007 1.49264 1.34889 1.20319 0.90702 1.00032 0.98140 0.87137 1.21767 1.02009 0.92367 1.03045 1.19505 0.98601 0.95837 0.94019 1.21297 0.98713 0.94780 0.99855 1.21403 1.00375 1.00585 0.92444 1.21458 0.98765 0.96070 0.98256 1.21394 0.98616 0.96247 0.98890 1.20991 0.98343 1.00132 0.92423 1.61749 1.59738 1.02182 1.00744 1.22385 0.97426 0.89903 1.02424 1.21741 0.98144 0.99142 0.88275 1.20800 0.85711 0.85870 0.84590 1.90473 1.42227 1.31612 1.85467 1.41935 1.41953 1.31659 1.05860 1.19613 1.24446 1.15100 0.86540 0.90357 1.25981 0.97837 0.96624 1.00944 1.69667 1.37172 1.24416 1.24962 0.84978 0.78132 0.78366 0.77182 1.19683 1.19830 1.19905 0.92514 0.91538 0.89879 0.90321 0.92899 0.74877 0.90634 0.90315 0.92014 0.85188 0.84117 0.83964 0.84591 0.86920 0.91671 0.92662 0.94789 0.86875 0.91462 0.77107 0.91464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.16 8.50 71.98 0.61 -2.54 16 2 C 0.07 1.42 2.50 44.92 0.11 1.53 16 3 H 0.11 1.82 8.03 -2.39 -0.02 1.80 16 4 C 0.13 2.87 4.69 86.38 0.40 3.28 16 5 N -0.71 -16.03 5.28 -463.06 -2.45 -18.48 16 6 C 0.52 13.15 7.02 87.66 0.62 13.76 16 7 O -0.58 -18.73 15.10 -3.03 -0.05 -18.78 16 8 C -0.07 -1.48 2.90 -12.29 -0.04 -1.51 16 9 H 0.11 2.18 7.88 -2.39 -0.02 2.17 16 10 C -0.13 -2.18 8.90 71.98 0.64 -1.54 16 11 C -0.08 -1.80 4.40 -19.87 -0.09 -1.88 16 12 C -0.13 -2.69 9.67 22.27 0.22 -2.47 16 13 C -0.13 -2.39 10.05 22.27 0.22 -2.16 16 14 C -0.13 -2.24 10.05 22.27 0.22 -2.02 16 15 C -0.13 -2.60 10.05 22.27 0.22 -2.37 16 16 C -0.10 -2.28 7.93 22.27 0.18 -2.10 16 17 N -0.52 -14.47 3.93 -901.60 -3.54 -18.01 16 18 C 0.03 0.81 8.46 127.69 1.08 1.89 16 19 C 0.06 1.79 4.89 85.56 0.42 2.21 16 20 C 0.44 19.72 7.47 87.66 0.66 20.38 16 21 O -0.61 -31.76 13.91 -3.07 -0.04 -31.81 16 22 N -0.58 -28.31 5.29 -306.98 -1.62 -29.93 16 23 C -0.33 -18.05 9.68 84.04 0.81 -17.23 16 24 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 25 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 26 N -0.92 -48.74 13.05 21.66 0.28 -48.46 16 27 Si 0.99 42.30 29.55 68.60 2.03 44.33 16 28 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 29 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 30 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 31 H 0.06 1.07 6.39 -2.39 -0.02 1.05 16 32 H 0.07 1.16 6.75 -2.39 -0.02 1.14 16 33 H 0.08 1.12 8.14 -2.39 -0.02 1.11 16 34 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.05 1.31 6.70 -2.39 -0.02 1.29 16 36 H 0.41 9.07 7.56 -92.71 -0.70 8.37 16 37 H 0.07 1.10 7.56 -2.39 -0.02 1.09 16 38 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.06 0.99 7.40 -2.39 -0.02 0.97 16 40 H 0.13 2.35 7.95 -2.91 -0.02 2.33 16 41 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 42 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 43 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 44 H 0.11 2.54 7.52 -2.91 -0.02 2.51 16 45 H 0.06 1.90 6.44 -2.39 -0.02 1.89 16 46 H 0.05 2.16 5.82 -2.39 -0.01 2.15 16 47 H 0.03 0.92 6.28 -2.39 -0.01 0.91 16 48 H 0.11 2.96 8.00 -2.39 -0.02 2.94 16 49 H 0.07 1.89 6.94 -2.39 -0.02 1.87 16 50 H 0.40 18.47 7.90 -92.71 -0.73 17.74 16 51 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 Total: -1.00 -70.07 409.26 0.89 -69.17 By element: Atomic # 1 Polarization: 45.51 SS G_CDS: -0.48 Total: 45.03 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: 6.76 Total: 6.93 kcal Atomic # 7 Polarization: -107.55 SS G_CDS: -7.33 Total: -114.88 kcal Atomic # 8 Polarization: -50.49 SS G_CDS: -0.09 Total: -50.58 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -70.07 0.89 -69.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506042900.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.577 kcal (2) G-P(sol) polarization free energy of solvation -70.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds