Wall clock time and date at job start Wed Apr 1 2020 05:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46618 * 2 1 4 4 O 1.42898 * 109.46957 * 119.99707 * 2 1 3 5 5 C 1.35678 * 117.00212 * 270.00532 * 4 2 1 6 6 C 1.38920 * 119.68687 * 180.02562 * 5 4 2 7 7 C 1.38375 * 119.11341 * 179.97438 * 6 5 4 8 8 C 1.38824 * 118.48542 * 359.97438 * 7 6 5 9 9 C 1.38048 * 119.28802 * 0.02562 * 8 7 6 10 10 N 1.31961 * 120.83655 * 0.27439 * 9 8 7 11 11 C 1.50696 * 109.47076 * 240.00016 * 2 1 3 12 12 O 1.21283 * 119.99624 * 244.99596 * 11 2 1 13 13 N 1.34772 * 120.00118 * 65.00401 * 11 2 1 14 14 C 1.46500 * 120.00002 * 180.02562 * 13 11 2 15 15 C 1.52996 * 109.47297 * 179.97438 * 14 13 11 16 16 H 1.09002 * 109.45079 * 294.94517 * 15 14 13 17 17 C 1.54862 * 109.45127 * 174.99932 * 15 14 13 18 18 C 1.47099 * 110.32408 * 168.69270 * 17 15 14 19 19 C 1.52568 * 114.32300 * 62.79919 * 18 17 15 20 20 C 1.50883 * 109.36107 * 274.98551 * 19 18 17 21 21 C 1.53953 * 110.09259 * 91.88705 * 20 19 18 22 22 N 1.44578 * 109.45189 * 54.86193 * 15 14 13 23 23 C 1.36942 * 118.64110 * 30.76918 * 22 15 14 24 24 H 1.08001 * 119.99835 * 27.75674 * 23 22 15 25 25 C 1.38810 * 120.00026 * 207.75442 * 23 22 15 26 26 N 1.31614 * 119.99938 * 14.60375 * 25 23 22 27 27 Si 1.86805 * 119.99613 * 194.60620 * 25 23 22 28 28 H 1.48501 * 109.47169 * 90.00429 * 27 25 23 29 29 H 1.48506 * 109.46870 * 209.99862 * 27 25 23 30 30 H 1.48491 * 109.47377 * 329.99968 * 27 25 23 31 31 H 1.09003 * 109.47382 * 300.00306 * 1 2 3 32 32 H 1.09004 * 109.46912 * 59.99959 * 1 2 3 33 33 H 1.09005 * 109.47185 * 179.97438 * 1 2 3 34 34 H 1.07999 * 120.44071 * 359.97438 * 6 5 4 35 35 H 1.08001 * 120.75415 * 179.97438 * 7 6 5 36 36 H 1.08004 * 120.35403 * 179.97438 * 8 7 6 37 37 H 1.08009 * 119.57742 * 179.97438 * 9 8 7 38 38 H 0.97001 * 120.00361 * 359.97438 * 13 11 2 39 39 H 1.09004 * 109.46932 * 299.99761 * 14 13 11 40 40 H 1.08997 * 109.47533 * 59.99606 * 14 13 11 41 41 H 1.08997 * 109.32925 * 288.95176 * 17 15 14 42 42 H 1.08998 * 109.32804 * 48.42941 * 17 15 14 43 43 H 1.08997 * 108.51233 * 184.05670 * 18 17 15 44 44 H 1.09003 * 108.50923 * 301.70421 * 18 17 15 45 45 H 1.08998 * 109.49324 * 34.95451 * 19 18 17 46 46 H 1.09008 * 109.48755 * 155.00196 * 19 18 17 47 47 H 1.08996 * 109.36763 * 212.07887 * 20 19 18 48 48 H 1.08997 * 109.36516 * 331.83177 * 20 19 18 49 49 H 1.09004 * 108.94309 * 80.12453 * 21 20 19 50 50 H 1.09003 * 108.95035 * 198.83727 * 21 20 19 51 51 H 0.97003 * 119.99621 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2115 0.0830 2.2742 6 6 2.6745 -0.5147 3.4397 7 6 2.8802 0.2682 4.5619 8 6 2.6146 1.6283 4.4782 9 6 2.1564 2.1548 3.2872 10 7 1.9642 1.3815 2.2353 11 6 2.0323 -0.7104 -1.2304 12 8 2.6530 -1.7466 -1.1214 13 7 1.7920 -0.1941 -2.4519 14 6 2.2798 -0.8851 -3.6481 15 6 1.8747 -0.0952 -4.8942 16 1 0.7886 -0.0936 -4.9858 17 6 2.4970 -0.7564 -6.1488 18 6 1.9108 -0.1853 -7.3711 19 6 2.1768 1.3053 -7.5586 20 6 1.1386 2.0975 -6.8029 21 6 1.6433 2.4115 -5.3827 22 7 2.3494 1.2655 -4.7772 23 6 3.5016 1.5006 -4.0755 24 1 4.2591 0.7338 -4.0086 25 6 3.6959 2.7246 -3.4503 26 7 2.6813 3.5458 -3.2814 27 14 5.3976 3.2063 -2.8487 28 1 6.1198 3.9244 -3.9294 29 1 5.2711 4.0929 -1.6640 30 1 6.1544 1.9849 -2.4743 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 2.8713 -1.5762 3.4694 35 1 3.2392 -0.1688 5.4820 36 1 2.7642 2.2674 5.3359 37 1 1.9478 3.2122 3.2170 38 1 1.2953 0.6345 -2.5392 39 1 3.3662 -0.9637 -3.6046 40 1 1.8448 -1.8834 -3.6939 41 1 3.5733 -0.5848 -6.1507 42 1 2.3053 -1.8291 -6.1238 43 1 2.3146 -0.7198 -8.2309 44 1 0.8324 -0.3414 -7.3433 45 1 3.1685 1.5485 -7.1773 46 1 2.1237 1.5537 -8.6186 47 1 0.9410 3.0305 -7.3307 48 1 0.2183 1.5173 -6.7372 49 1 2.3235 3.2620 -5.4289 50 1 0.7920 2.6733 -4.7543 51 1 2.8170 4.4009 -2.8442 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506579052.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:58 Heat of formation + Delta-G solvation = -17.805036 kcal Electronic energy + Delta-G solvation = -32068.183685 eV Core-core repulsion = 27968.564821 eV Total energy + Delta-G solvation = -4099.618864 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.65426 -39.31634 -38.24103 -37.30741 -34.45993 -33.48943 -32.55411 -32.31978 -31.30546 -30.67311 -29.89077 -27.02478 -25.71033 -24.59391 -23.59734 -23.45981 -22.86664 -21.77431 -20.01496 -19.45278 -19.17751 -18.38719 -17.39959 -16.33325 -16.11789 -15.80904 -15.67617 -15.44221 -15.04953 -14.71870 -14.45208 -14.34098 -14.08072 -13.61742 -13.56247 -13.35562 -13.17098 -13.06701 -12.89610 -12.66575 -12.16902 -12.04731 -12.00203 -11.95865 -11.56705 -11.47357 -11.26346 -11.08846 -10.87506 -10.85136 -10.59625 -10.20134 -10.03222 -9.99026 -9.97976 -9.70569 -9.59830 -9.57314 -9.52105 -9.14024 -8.46816 -8.42807 -8.21778 -6.71522 -5.83157 -3.27556 1.14260 1.25412 2.86449 3.20778 3.35697 3.43516 3.46427 3.78792 4.04105 4.32024 4.47163 4.78737 4.98982 5.08382 5.15136 5.17247 5.20792 5.23892 5.34655 5.42598 5.45985 5.50349 5.64251 5.68286 5.78597 5.84391 5.89370 5.96168 6.00926 6.07738 6.13246 6.14341 6.20755 6.30317 6.37708 6.42360 6.56321 6.61386 6.65032 6.69838 6.75355 6.84227 6.98765 7.09875 7.21011 7.34561 7.40705 7.66380 7.82045 7.88082 8.27295 8.41884 8.87794 9.19843 9.84000 10.28796 11.23488 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013063 B = 0.003400 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.871752 B = 8233.260460 C = 9294.164005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.072 3.928 3 H 0.118 0.882 4 O -0.277 6.277 5 C 0.328 3.672 6 C -0.193 4.193 7 C -0.043 4.043 8 C -0.221 4.221 9 C 0.143 3.857 10 N -0.536 5.536 11 C 0.515 3.485 12 O -0.548 6.548 13 N -0.683 5.683 14 C 0.131 3.869 15 C 0.174 3.826 16 H 0.045 0.955 17 C -0.136 4.136 18 C -0.101 4.101 19 C -0.107 4.107 20 C -0.143 4.143 21 C 0.180 3.820 22 N -0.584 5.584 23 C -0.250 4.250 24 H 0.063 0.937 25 C 0.013 3.987 26 N -0.901 5.901 27 Si 0.890 3.110 28 H -0.288 1.288 29 H -0.292 1.292 30 H -0.280 1.280 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.134 0.866 37 H 0.159 0.841 38 H 0.412 0.588 39 H 0.068 0.932 40 H 0.051 0.949 41 H 0.063 0.937 42 H 0.048 0.952 43 H 0.040 0.960 44 H 0.046 0.954 45 H 0.073 0.927 46 H 0.039 0.961 47 H 0.049 0.951 48 H 0.043 0.957 49 H 0.075 0.925 50 H 0.024 0.976 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.369 -3.635 7.434 9.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.012 3.988 3 H 0.135 0.865 4 O -0.182 6.182 5 C 0.149 3.851 6 C -0.214 4.214 7 C -0.068 4.068 8 C -0.241 4.241 9 C -0.013 4.013 10 N -0.260 5.260 11 C 0.299 3.701 12 O -0.426 6.426 13 N -0.334 5.334 14 C 0.006 3.994 15 C 0.065 3.935 16 H 0.063 0.937 17 C -0.177 4.177 18 C -0.138 4.138 19 C -0.144 4.144 20 C -0.182 4.182 21 C 0.056 3.944 22 N -0.306 5.306 23 C -0.380 4.380 24 H 0.081 0.919 25 C -0.186 4.186 26 N -0.546 5.546 27 Si 0.720 3.280 28 H -0.215 1.215 29 H -0.218 1.218 30 H -0.206 1.206 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.159 0.841 35 H 0.156 0.844 36 H 0.152 0.848 37 H 0.176 0.824 38 H 0.249 0.751 39 H 0.087 0.913 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.065 0.935 45 H 0.092 0.908 46 H 0.058 0.942 47 H 0.067 0.933 48 H 0.062 0.938 49 H 0.093 0.907 50 H 0.042 0.958 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.238 -4.135 6.729 9.477 hybrid contribution 1.074 0.711 0.929 1.588 sum -4.164 -3.424 7.658 9.365 Atomic orbital electron populations 1.22112 0.92809 1.02955 1.03741 1.22134 0.95447 0.98604 0.82581 0.86471 1.86354 1.79584 1.34568 1.17736 1.19971 0.90527 0.87409 0.87186 1.21073 1.06626 1.02157 0.91540 1.21368 0.94416 0.93471 0.97563 1.21946 1.06009 0.96182 0.99962 1.22462 0.92326 0.99269 0.87262 1.67345 1.21581 1.04717 1.32371 1.19949 0.80406 0.85335 0.84446 1.90658 1.41174 1.24072 1.86730 1.45531 1.56064 1.27516 1.04272 1.21503 1.00021 0.93684 0.84145 1.20506 0.95831 0.86166 0.91007 0.93691 1.21373 1.01609 0.98155 0.96582 1.20287 0.99912 0.96314 0.97300 1.20948 1.01238 0.94526 0.97710 1.22071 0.97767 0.98753 0.99610 1.21019 0.95946 0.90068 0.87414 1.43733 1.27419 0.99933 1.59518 1.19047 0.94205 0.99750 1.24955 0.91922 1.24897 0.96675 0.98779 0.98217 1.70013 1.28252 1.10613 1.45697 0.86475 0.85112 0.78345 0.78041 1.21540 1.21816 1.20584 0.91272 0.90111 0.91699 0.84111 0.84370 0.84759 0.82411 0.75114 0.91345 0.93084 0.91814 0.93294 0.94090 0.93527 0.90790 0.94227 0.93271 0.93827 0.90710 0.95781 0.93706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.49 37.16 0.35 -1.95 16 2 C 0.07 1.30 2.90 -27.88 -0.08 1.22 16 3 H 0.12 2.26 6.99 -51.93 -0.36 1.90 16 4 O -0.28 -5.07 9.30 -38.60 -0.36 -5.43 16 5 C 0.33 5.31 7.45 -17.12 -0.13 5.18 16 6 C -0.19 -2.52 10.04 -39.28 -0.39 -2.92 16 7 C -0.04 -0.44 10.17 -39.31 -0.40 -0.84 16 8 C -0.22 -2.23 10.11 -39.43 -0.40 -2.63 16 9 C 0.14 1.76 11.17 -17.57 -0.20 1.57 16 10 N -0.54 -8.46 8.65 -13.33 -0.12 -8.58 16 11 C 0.51 10.49 7.18 -10.99 -0.08 10.41 16 12 O -0.55 -12.83 16.51 -14.31 -0.24 -13.06 16 13 N -0.68 -13.35 4.67 -60.30 -0.28 -13.63 16 14 C 0.13 2.51 4.52 -4.04 -0.02 2.49 16 15 C 0.17 3.21 2.19 -67.98 -0.15 3.06 16 16 H 0.05 0.81 8.06 -51.93 -0.42 0.39 16 17 C -0.14 -2.27 5.06 -28.58 -0.14 -2.41 16 18 C -0.10 -1.56 5.16 -29.78 -0.15 -1.71 16 19 C -0.11 -1.78 5.51 -28.01 -0.15 -1.94 16 20 C -0.14 -2.50 5.71 -27.30 -0.16 -2.65 16 21 C 0.18 3.83 4.66 -2.94 -0.01 3.82 16 22 N -0.58 -12.48 1.77 -164.46 -0.29 -12.77 16 23 C -0.25 -6.10 7.64 -15.06 -0.12 -6.21 16 24 H 0.06 1.62 6.72 -52.49 -0.35 1.26 16 25 C 0.01 0.33 4.89 -17.43 -0.09 0.25 16 26 N -0.90 -23.47 11.03 55.49 0.61 -22.86 16 27 Si 0.89 21.42 29.58 -169.99 -5.03 16.39 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 29 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 30 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.08 1.10 7.92 -51.93 -0.41 0.69 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 37 H 0.16 1.54 8.06 -52.48 -0.42 1.12 16 38 H 0.41 8.21 7.86 -40.82 -0.32 7.89 16 39 H 0.07 1.47 6.84 -51.93 -0.36 1.11 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.05 0.73 8.11 -51.93 -0.42 0.31 16 43 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.05 0.69 7.35 -51.93 -0.38 0.31 16 45 H 0.07 1.43 7.48 -51.93 -0.39 1.04 16 46 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 47 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 48 H 0.04 0.72 7.31 -51.93 -0.38 0.34 16 49 H 0.07 1.82 6.39 -51.93 -0.33 1.49 16 50 H 0.02 0.55 8.02 -51.93 -0.42 0.13 16 51 H 0.25 6.60 8.31 -40.82 -0.34 6.26 16 LS Contribution 403.27 15.07 6.08 6.08 Total: -1.00 -29.26 403.27 -10.26 -39.52 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -8.33 Total: 9.61 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: -2.31 Total: 4.73 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: -0.08 Total: -57.84 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.60 Total: -18.49 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -29.26 -10.26 -39.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506579052.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.713 kcal (2) G-P(sol) polarization free energy of solvation -29.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds