Wall clock time and date at job start Wed Apr 1 2020 05:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46618 * 2 1 4 4 O 1.42898 * 109.46957 * 119.99707 * 2 1 3 5 5 C 1.35678 * 117.00212 * 270.00532 * 4 2 1 6 6 C 1.38920 * 119.68687 * 180.02562 * 5 4 2 7 7 C 1.38375 * 119.11341 * 179.97438 * 6 5 4 8 8 C 1.38824 * 118.48542 * 359.97438 * 7 6 5 9 9 C 1.38048 * 119.28802 * 0.02562 * 8 7 6 10 10 N 1.31961 * 120.83655 * 0.27439 * 9 8 7 11 11 C 1.50696 * 109.47076 * 240.00016 * 2 1 3 12 12 O 1.21283 * 119.99624 * 244.99596 * 11 2 1 13 13 N 1.34772 * 120.00118 * 65.00401 * 11 2 1 14 14 C 1.46500 * 120.00002 * 180.02562 * 13 11 2 15 15 C 1.52996 * 109.47297 * 179.97438 * 14 13 11 16 16 H 1.09002 * 109.45079 * 294.94517 * 15 14 13 17 17 C 1.54862 * 109.45127 * 174.99932 * 15 14 13 18 18 C 1.47099 * 110.32408 * 168.69270 * 17 15 14 19 19 C 1.52568 * 114.32300 * 62.79919 * 18 17 15 20 20 C 1.50883 * 109.36107 * 274.98551 * 19 18 17 21 21 C 1.53953 * 110.09259 * 91.88705 * 20 19 18 22 22 N 1.44578 * 109.45189 * 54.86193 * 15 14 13 23 23 C 1.36942 * 118.64110 * 30.76918 * 22 15 14 24 24 H 1.08001 * 119.99835 * 27.75674 * 23 22 15 25 25 C 1.38810 * 120.00026 * 207.75442 * 23 22 15 26 26 N 1.31614 * 119.99938 * 14.60375 * 25 23 22 27 27 Si 1.86805 * 119.99613 * 194.60620 * 25 23 22 28 28 H 1.48501 * 109.47169 * 90.00429 * 27 25 23 29 29 H 1.48506 * 109.46870 * 209.99862 * 27 25 23 30 30 H 1.48491 * 109.47377 * 329.99968 * 27 25 23 31 31 H 1.09003 * 109.47382 * 300.00306 * 1 2 3 32 32 H 1.09004 * 109.46912 * 59.99959 * 1 2 3 33 33 H 1.09005 * 109.47185 * 179.97438 * 1 2 3 34 34 H 1.07999 * 120.44071 * 359.97438 * 6 5 4 35 35 H 1.08001 * 120.75415 * 179.97438 * 7 6 5 36 36 H 1.08004 * 120.35403 * 179.97438 * 8 7 6 37 37 H 1.08009 * 119.57742 * 179.97438 * 9 8 7 38 38 H 0.97001 * 120.00361 * 359.97438 * 13 11 2 39 39 H 1.09004 * 109.46932 * 299.99761 * 14 13 11 40 40 H 1.08997 * 109.47533 * 59.99606 * 14 13 11 41 41 H 1.08997 * 109.32925 * 288.95176 * 17 15 14 42 42 H 1.08998 * 109.32804 * 48.42941 * 17 15 14 43 43 H 1.08997 * 108.51233 * 184.05670 * 18 17 15 44 44 H 1.09003 * 108.50923 * 301.70421 * 18 17 15 45 45 H 1.08998 * 109.49324 * 34.95451 * 19 18 17 46 46 H 1.09008 * 109.48755 * 155.00196 * 19 18 17 47 47 H 1.08996 * 109.36763 * 212.07887 * 20 19 18 48 48 H 1.08997 * 109.36516 * 331.83177 * 20 19 18 49 49 H 1.09004 * 108.94309 * 80.12453 * 21 20 19 50 50 H 1.09003 * 108.95035 * 198.83727 * 21 20 19 51 51 H 0.97003 * 119.99621 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2115 0.0830 2.2742 6 6 2.6745 -0.5147 3.4397 7 6 2.8802 0.2682 4.5619 8 6 2.6146 1.6283 4.4782 9 6 2.1564 2.1548 3.2872 10 7 1.9642 1.3815 2.2353 11 6 2.0323 -0.7104 -1.2304 12 8 2.6530 -1.7466 -1.1214 13 7 1.7920 -0.1941 -2.4519 14 6 2.2798 -0.8851 -3.6481 15 6 1.8747 -0.0952 -4.8942 16 1 0.7886 -0.0936 -4.9858 17 6 2.4970 -0.7564 -6.1488 18 6 1.9108 -0.1853 -7.3711 19 6 2.1768 1.3053 -7.5586 20 6 1.1386 2.0975 -6.8029 21 6 1.6433 2.4115 -5.3827 22 7 2.3494 1.2655 -4.7772 23 6 3.5016 1.5006 -4.0755 24 1 4.2591 0.7338 -4.0086 25 6 3.6959 2.7246 -3.4503 26 7 2.6813 3.5458 -3.2814 27 14 5.3976 3.2063 -2.8487 28 1 6.1198 3.9244 -3.9294 29 1 5.2711 4.0929 -1.6640 30 1 6.1544 1.9849 -2.4743 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 2.8713 -1.5762 3.4694 35 1 3.2392 -0.1688 5.4820 36 1 2.7642 2.2674 5.3359 37 1 1.9478 3.2122 3.2170 38 1 1.2953 0.6345 -2.5392 39 1 3.3662 -0.9637 -3.6046 40 1 1.8448 -1.8834 -3.6939 41 1 3.5733 -0.5848 -6.1507 42 1 2.3053 -1.8291 -6.1238 43 1 2.3146 -0.7198 -8.2309 44 1 0.8324 -0.3414 -7.3433 45 1 3.1685 1.5485 -7.1773 46 1 2.1237 1.5537 -8.6186 47 1 0.9410 3.0305 -7.3307 48 1 0.2183 1.5173 -6.7372 49 1 2.3235 3.2620 -5.4289 50 1 0.7920 2.6733 -4.7543 51 1 2.8170 4.4009 -2.8442 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506579052.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:57 Heat of formation + Delta-G solvation = -34.452195 kcal Electronic energy + Delta-G solvation = -32068.905560 eV Core-core repulsion = 27968.564821 eV Total energy + Delta-G solvation = -4100.340739 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.80327 -40.78731 -39.70579 -38.64352 -36.02624 -35.24809 -33.83290 -33.42979 -32.66647 -32.42003 -30.95951 -28.64891 -27.33660 -25.84937 -25.20431 -24.59722 -24.06543 -23.16118 -21.53292 -20.92551 -20.78698 -19.56489 -18.86101 -17.84519 -17.43143 -17.29773 -16.94591 -16.69458 -16.57256 -16.25941 -15.90328 -15.73716 -15.47821 -15.21676 -15.01677 -14.66811 -14.53317 -14.32115 -14.11494 -13.98432 -13.68904 -13.41128 -13.39112 -13.16686 -12.93317 -12.89721 -12.83394 -12.77409 -12.74096 -12.39493 -12.18910 -12.02520 -11.54647 -11.39022 -11.31927 -11.19913 -11.04877 -10.92726 -10.73317 -10.55505 -10.35846 -9.88456 -9.50745 -8.55495 -7.80905 -5.23256 0.18409 0.32772 1.36830 1.42396 1.45964 1.52583 1.64371 2.49950 2.63572 2.81614 3.28886 3.33937 3.59464 3.69771 3.88643 4.00521 4.04923 4.06359 4.08684 4.10236 4.22504 4.28328 4.35328 4.43665 4.50008 4.61638 4.65146 4.65641 4.68312 4.78887 4.81383 5.01242 5.02379 5.05702 5.07698 5.14749 5.25374 5.26015 5.27986 5.39650 5.43910 5.51409 5.56254 5.61804 5.68764 5.77082 5.80172 5.92800 6.17689 6.46708 6.63334 6.88365 7.24463 7.26779 8.00748 8.38026 9.22258 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013063 B = 0.003400 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.871752 B = 8233.260460 C = 9294.164005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.080 3.920 3 H 0.098 0.902 4 O -0.301 6.301 5 C 0.289 3.711 6 C -0.202 4.202 7 C -0.034 4.034 8 C -0.202 4.202 9 C 0.120 3.880 10 N -0.567 5.567 11 C 0.511 3.489 12 O -0.583 6.583 13 N -0.679 5.679 14 C 0.133 3.867 15 C 0.174 3.826 16 H 0.061 0.939 17 C -0.128 4.128 18 C -0.100 4.100 19 C -0.104 4.104 20 C -0.132 4.132 21 C 0.189 3.811 22 N -0.588 5.588 23 C -0.232 4.232 24 H 0.046 0.954 25 C -0.023 4.023 26 N -0.914 5.914 27 Si 0.924 3.076 28 H -0.288 1.288 29 H -0.298 1.298 30 H -0.291 1.291 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.148 0.852 35 H 0.180 0.820 36 H 0.174 0.826 37 H 0.178 0.822 38 H 0.411 0.589 39 H 0.040 0.960 40 H 0.070 0.930 41 H 0.040 0.960 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.040 0.960 46 H 0.063 0.937 47 H 0.060 0.940 48 H 0.061 0.939 49 H 0.039 0.961 50 H 0.005 0.995 51 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.451 -4.148 7.840 10.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.020 3.980 3 H 0.116 0.884 4 O -0.208 6.208 5 C 0.111 3.889 6 C -0.223 4.223 7 C -0.060 4.060 8 C -0.222 4.222 9 C -0.035 4.035 10 N -0.291 5.291 11 C 0.296 3.704 12 O -0.464 6.464 13 N -0.328 5.328 14 C 0.008 3.992 15 C 0.066 3.934 16 H 0.079 0.921 17 C -0.169 4.169 18 C -0.137 4.137 19 C -0.142 4.142 20 C -0.171 4.171 21 C 0.064 3.936 22 N -0.311 5.311 23 C -0.363 4.363 24 H 0.064 0.936 25 C -0.220 4.220 26 N -0.560 5.560 27 Si 0.756 3.244 28 H -0.215 1.215 29 H -0.225 1.225 30 H -0.217 1.217 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.166 0.834 35 H 0.197 0.803 36 H 0.192 0.808 37 H 0.195 0.805 38 H 0.247 0.753 39 H 0.058 0.942 40 H 0.088 0.912 41 H 0.059 0.941 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.059 0.941 46 H 0.081 0.919 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.057 0.943 50 H 0.023 0.977 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.328 -4.642 7.121 10.597 hybrid contribution 1.464 0.878 0.897 1.929 sum -4.863 -3.764 8.018 10.105 Atomic orbital electron populations 1.22033 0.90295 1.03569 1.04438 1.21966 0.97237 0.96811 0.81944 0.88439 1.86297 1.80619 1.35544 1.18292 1.20314 0.93196 0.88009 0.87410 1.21374 1.06437 1.03026 0.91465 1.21886 0.92799 0.93377 0.97896 1.22403 1.03106 0.96632 1.00047 1.22995 0.92827 1.00069 0.87578 1.67254 1.22621 1.04989 1.34269 1.20453 0.79687 0.84960 0.85310 1.90622 1.42765 1.25720 1.87288 1.45569 1.55589 1.27230 1.04444 1.21533 0.98387 0.94856 0.84399 1.20684 0.96739 0.84423 0.91509 0.92057 1.21289 1.00029 0.99583 0.96001 1.20270 1.00934 0.95314 0.97206 1.20912 0.98976 0.95504 0.98760 1.21942 0.98456 0.99888 0.96809 1.20807 0.94174 0.88957 0.89644 1.43781 1.26647 1.01297 1.59331 1.18948 0.94762 0.98793 1.23790 0.93634 1.25200 0.97915 0.99426 0.99473 1.70089 1.28612 1.10512 1.46823 0.85937 0.83663 0.77362 0.77417 1.21468 1.22481 1.21736 0.90530 0.89328 0.91031 0.83386 0.80253 0.80825 0.80505 0.75263 0.94184 0.91193 0.94081 0.90818 0.91982 0.91852 0.94066 0.91873 0.92116 0.92052 0.94288 0.97708 0.94429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.30 9.49 71.98 0.68 -3.62 16 2 C 0.08 3.02 2.90 29.85 0.09 3.10 16 3 H 0.10 4.01 6.99 -2.39 -0.02 3.99 16 4 O -0.30 -11.52 9.30 -70.96 -0.66 -12.18 16 5 C 0.29 9.59 7.45 84.79 0.63 10.22 16 6 C -0.20 -5.17 10.04 22.47 0.23 -4.94 16 7 C -0.03 -0.61 10.17 22.44 0.23 -0.38 16 8 C -0.20 -3.49 10.11 22.36 0.23 -3.26 16 9 C 0.12 2.85 11.17 84.63 0.95 3.80 16 10 N -0.57 -18.25 8.65 -308.94 -2.67 -20.93 16 11 C 0.51 21.58 7.18 87.66 0.63 22.21 16 12 O -0.58 -28.30 16.51 15.95 0.26 -28.03 16 13 N -0.68 -27.17 4.67 -463.07 -2.16 -29.34 16 14 C 0.13 5.10 4.52 86.38 0.39 5.49 16 15 C 0.17 6.27 2.19 45.98 0.10 6.37 16 16 H 0.06 2.06 8.06 -2.39 -0.02 2.04 16 17 C -0.13 -4.03 5.06 29.40 0.15 -3.88 16 18 C -0.10 -2.76 5.16 28.62 0.15 -2.61 16 19 C -0.10 -3.24 5.51 29.76 0.16 -3.08 16 20 C -0.13 -4.35 5.71 30.23 0.17 -4.18 16 21 C 0.19 8.06 4.66 86.49 0.40 8.47 16 22 N -0.59 -25.35 1.77 -674.25 -1.20 -26.55 16 23 C -0.23 -11.66 7.64 84.03 0.64 -11.02 16 24 H 0.05 2.45 6.72 -2.91 -0.02 2.43 16 25 C -0.02 -1.24 4.89 84.86 0.41 -0.82 16 26 N -0.91 -49.10 11.03 21.65 0.24 -48.87 16 27 Si 0.92 45.39 29.58 68.60 2.03 47.41 16 28 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 29 H -0.30 -14.83 7.11 99.48 0.71 -14.13 16 30 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 31 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.09 2.42 7.92 -2.39 -0.02 2.40 16 33 H 0.07 1.99 8.14 -2.38 -0.02 1.98 16 34 H 0.15 3.40 8.06 -2.91 -0.02 3.37 16 35 H 0.18 1.66 8.06 -2.91 -0.02 1.63 16 36 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 37 H 0.18 3.25 8.06 -2.91 -0.02 3.23 16 38 H 0.41 16.74 7.86 -92.71 -0.73 16.01 16 39 H 0.04 1.77 6.84 -2.38 -0.02 1.76 16 40 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 41 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.07 1.97 8.11 -2.39 -0.02 1.95 16 43 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.06 1.59 7.35 -2.39 -0.02 1.57 16 45 H 0.04 1.56 7.48 -2.39 -0.02 1.54 16 46 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 47 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.06 1.83 7.31 -2.39 -0.02 1.81 16 49 H 0.04 1.94 6.39 -2.39 -0.02 1.92 16 50 H 0.00 0.22 8.02 -2.39 -0.02 0.20 16 51 H 0.25 13.25 8.31 -92.71 -0.77 12.48 16 Total: -1.00 -67.29 403.27 2.27 -65.02 By element: Atomic # 1 Polarization: 31.38 SS G_CDS: 0.19 Total: 31.58 kcal Atomic # 6 Polarization: 15.64 SS G_CDS: 6.24 Total: 21.88 kcal Atomic # 7 Polarization: -119.88 SS G_CDS: -5.79 Total: -125.68 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: -0.40 Total: -40.21 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -67.29 2.27 -65.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506579052.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.565 kcal (2) G-P(sol) polarization free energy of solvation -67.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds