Wall clock time and date at job start Wed Apr 1 2020 05:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46976 * 2 1 4 4 O 1.42901 * 109.46753 * 240.00379 * 2 1 3 5 5 C 1.35673 * 117.00163 * 90.00229 * 4 2 1 6 6 C 1.38916 * 119.68378 * 179.97438 * 5 4 2 7 7 C 1.38380 * 119.11326 * 179.97438 * 6 5 4 8 8 C 1.38826 * 118.48155 * 359.97438 * 7 6 5 9 9 C 1.38053 * 119.28999 * 0.02562 * 8 7 6 10 10 N 1.31963 * 120.83560 * 359.74086 * 9 8 7 11 11 C 1.50700 * 109.46824 * 120.00298 * 2 1 3 12 12 O 1.21281 * 119.99913 * 120.00005 * 11 2 1 13 13 N 1.34773 * 120.00186 * 299.99336 * 11 2 1 14 14 C 1.46508 * 120.00164 * 180.02562 * 13 11 2 15 15 C 1.53003 * 109.46982 * 180.02562 * 14 13 11 16 16 H 1.09000 * 109.44718 * 294.95256 * 15 14 13 17 17 C 1.54862 * 109.44580 * 175.00099 * 15 14 13 18 18 C 1.47088 * 110.32176 * 168.69345 * 17 15 14 19 19 C 1.52569 * 114.32604 * 62.80335 * 18 17 15 20 20 C 1.50882 * 109.35832 * 274.98712 * 19 18 17 21 21 C 1.53951 * 110.09411 * 91.88606 * 20 19 18 22 22 N 1.44575 * 109.44812 * 54.87211 * 15 14 13 23 23 C 1.36942 * 118.64508 * 30.76356 * 22 15 14 24 24 H 1.08001 * 119.99810 * 324.69847 * 23 22 15 25 25 C 1.38812 * 119.99654 * 144.69499 * 23 22 15 26 26 N 1.31620 * 119.99652 * 184.85162 * 25 23 22 27 27 Si 1.86801 * 120.00248 * 4.85741 * 25 23 22 28 28 H 1.48503 * 109.46818 * 94.81012 * 27 25 23 29 29 H 1.48505 * 109.46824 * 214.80864 * 27 25 23 30 30 H 1.48494 * 109.47028 * 334.81001 * 27 25 23 31 31 H 1.08997 * 109.46976 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47251 * 299.99743 * 1 2 3 33 33 H 1.08996 * 109.47203 * 59.99900 * 1 2 3 34 34 H 1.08006 * 120.44553 * 359.95606 * 6 5 4 35 35 H 1.08001 * 120.75794 * 180.02562 * 7 6 5 36 36 H 1.08002 * 120.35544 * 180.02562 * 8 7 6 37 37 H 1.08003 * 119.57585 * 180.02562 * 9 8 7 38 38 H 0.96999 * 120.00134 * 0.02562 * 13 11 2 39 39 H 1.08997 * 109.46840 * 300.00893 * 14 13 11 40 40 H 1.09001 * 109.46351 * 60.00347 * 14 13 11 41 41 H 1.09000 * 109.33260 * 288.95807 * 17 15 14 42 42 H 1.09006 * 109.32737 * 48.43168 * 17 15 14 43 43 H 1.08997 * 108.51459 * 184.06185 * 18 17 15 44 44 H 1.09004 * 108.51150 * 301.70321 * 18 17 15 45 45 H 1.08996 * 109.48833 * 34.95171 * 19 18 17 46 46 H 1.08994 * 109.49269 * 155.00181 * 19 18 17 47 47 H 1.08997 * 109.36927 * 212.07337 * 20 19 18 48 48 H 1.08993 * 109.36879 * 331.82185 * 20 19 18 49 49 H 1.09000 * 108.94805 * 80.11939 * 21 20 19 50 50 H 1.08999 * 108.95077 * 198.83950 * 21 20 19 51 51 H 0.97002 * 120.00371 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.2116 0.0830 -2.2742 6 6 2.6746 -0.5147 -3.4396 7 6 2.8794 0.2681 -4.5622 8 6 2.6120 1.6278 -4.4790 9 6 2.1538 2.1543 -3.2879 10 7 1.9638 1.3814 -2.2353 11 6 2.0323 -0.7105 1.2304 12 8 2.7295 -1.6966 1.1191 13 7 1.7068 -0.2500 2.4545 14 6 2.1956 -0.9404 3.6508 15 6 1.6850 -0.2196 4.9000 16 1 2.1199 0.7789 4.9461 17 6 2.0955 -1.0196 6.1609 18 6 1.8566 -0.2210 7.3728 19 6 0.3927 0.1358 7.6119 20 6 0.0485 1.3828 6.8355 21 6 -0.4995 1.0069 5.4468 22 7 0.2443 -0.1144 4.8401 23 6 -0.4592 -1.0955 4.1938 24 1 -0.0447 -1.5679 3.3155 25 6 -1.7051 -1.4829 4.6676 26 7 -2.3391 -2.4898 4.1051 27 14 -2.4820 -0.5750 6.1035 28 1 -3.3942 0.4776 5.5884 29 1 -3.2522 -1.5332 6.9366 30 1 -1.4173 0.0523 6.9269 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 2.8723 -1.5761 -3.4690 35 1 3.2383 -0.1690 -5.4823 36 1 2.7608 2.2668 -5.3368 37 1 1.9439 3.2115 -3.2181 38 1 1.1489 0.5385 2.5436 39 1 1.8326 -1.9682 3.6508 40 1 3.2856 -0.9400 3.6505 41 1 1.5098 -1.9374 6.2124 42 1 3.1538 -1.2731 6.0986 43 1 2.2216 -0.7810 8.2338 44 1 2.4279 0.7041 7.2958 45 1 -0.2410 -0.6863 7.2792 46 1 0.2304 0.3126 8.6751 47 1 -0.7057 1.9510 7.3799 48 1 0.9438 1.9927 6.7157 49 1 -1.5478 0.7246 5.5445 50 1 -0.4266 1.8744 4.7908 51 1 -3.2099 -2.7604 4.4359 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506579058.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:02 Heat of formation + Delta-G solvation = 38.431524 kcal Electronic energy + Delta-G solvation = -31900.862027 eV Core-core repulsion = 27803.681763 eV Total energy + Delta-G solvation = -4097.180264 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.78639 -39.54688 -38.66288 -37.50466 -34.77594 -33.54114 -32.72651 -32.54636 -31.63838 -31.17182 -29.99617 -27.31487 -25.82168 -24.70708 -23.86998 -23.58729 -22.93166 -21.99462 -20.43289 -19.83624 -19.29900 -18.52116 -17.60803 -16.58676 -16.23031 -15.94226 -15.78277 -15.62720 -15.52978 -15.20568 -14.73272 -14.59589 -14.32216 -13.99573 -13.54966 -13.46471 -13.30003 -13.05087 -12.90718 -12.77847 -12.25429 -12.10779 -12.08533 -12.05817 -11.93641 -11.68766 -11.56908 -11.23160 -10.96713 -10.90892 -10.64498 -10.26379 -10.13213 -10.10324 -9.90108 -9.87760 -9.71816 -9.54602 -9.28026 -8.59576 -8.57953 -8.43685 -8.29038 -6.90228 -5.89301 -3.43280 1.01720 1.12805 2.72052 3.07954 3.31129 3.35893 3.53275 3.64830 3.86638 4.17426 4.52177 4.67349 4.79450 4.87392 4.96673 5.04666 5.08350 5.18726 5.22947 5.27059 5.35203 5.35529 5.49118 5.56309 5.68555 5.72252 5.76979 5.81713 5.87056 5.92640 5.95377 6.02870 6.15135 6.17932 6.25616 6.30120 6.36434 6.41074 6.43023 6.50530 6.61982 6.63761 6.69746 6.78996 6.93210 6.99661 7.08663 7.22895 7.72446 8.03457 8.09931 8.40492 8.69703 8.96586 9.72764 10.03536 11.22742 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016556 B = 0.002783 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.844697 B =10056.952841 C =10528.815777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.076 3.924 3 H 0.109 0.891 4 O -0.275 6.275 5 C 0.329 3.671 6 C -0.191 4.191 7 C -0.041 4.041 8 C -0.220 4.220 9 C 0.140 3.860 10 N -0.542 5.542 11 C 0.514 3.486 12 O -0.537 6.537 13 N -0.696 5.696 14 C 0.125 3.875 15 C 0.183 3.817 16 H 0.049 0.951 17 C -0.138 4.138 18 C -0.101 4.101 19 C -0.119 4.119 20 C -0.128 4.128 21 C 0.145 3.855 22 N -0.603 5.603 23 C -0.280 4.280 24 H 0.097 0.903 25 C 0.030 3.970 26 N -0.911 5.911 27 Si 0.830 3.170 28 H -0.297 1.297 29 H -0.316 1.316 30 H -0.189 1.189 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.143 0.857 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.158 0.842 38 H 0.405 0.595 39 H 0.080 0.920 40 H 0.056 0.944 41 H 0.072 0.928 42 H 0.051 0.949 43 H 0.044 0.956 44 H 0.046 0.954 45 H 0.091 0.909 46 H 0.045 0.955 47 H 0.054 0.946 48 H 0.056 0.944 49 H 0.040 0.960 50 H 0.022 0.978 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.690 11.148 -8.948 17.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.016 3.984 3 H 0.126 0.874 4 O -0.180 6.180 5 C 0.150 3.850 6 C -0.212 4.212 7 C -0.067 4.067 8 C -0.241 4.241 9 C -0.016 4.016 10 N -0.266 5.266 11 C 0.298 3.702 12 O -0.414 6.414 13 N -0.347 5.347 14 C 0.001 3.999 15 C 0.075 3.925 16 H 0.067 0.933 17 C -0.178 4.178 18 C -0.139 4.139 19 C -0.157 4.157 20 C -0.167 4.167 21 C 0.021 3.979 22 N -0.327 5.327 23 C -0.408 4.408 24 H 0.114 0.886 25 C -0.170 4.170 26 N -0.553 5.553 27 Si 0.665 3.335 28 H -0.227 1.227 29 H -0.247 1.247 30 H -0.114 1.114 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.085 0.915 34 H 0.160 0.840 35 H 0.157 0.843 36 H 0.153 0.847 37 H 0.175 0.825 38 H 0.240 0.760 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.091 0.909 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.109 0.891 46 H 0.064 0.936 47 H 0.072 0.928 48 H 0.075 0.925 49 H 0.058 0.942 50 H 0.040 0.960 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.794 10.408 -8.173 16.464 hybrid contribution -1.015 0.532 0.036 1.146 sum 8.780 10.940 -8.137 16.217 Atomic orbital electron populations 1.22141 0.91815 1.04322 1.03602 1.22130 0.96152 0.97474 0.82614 0.87358 1.86399 1.79439 1.34457 1.17688 1.19963 0.90413 0.87331 0.87280 1.21117 1.06316 1.02293 0.91449 1.21397 0.94258 0.93446 0.97580 1.21945 1.05966 0.96224 0.99933 1.22420 0.92575 0.99170 0.87420 1.67302 1.21785 1.04874 1.32644 1.20027 0.80910 0.84910 0.84382 1.90691 1.38231 1.25800 1.86682 1.45641 1.52486 1.32050 1.04537 1.21612 0.96596 0.98371 0.83328 1.20474 0.84847 0.95781 0.91431 0.93254 1.21342 0.99821 1.00681 0.95970 1.20324 0.96448 0.99403 0.97715 1.21427 0.96757 0.99464 0.98009 1.21802 1.00146 0.97473 0.97264 1.21490 0.94525 0.90090 0.91769 1.43944 1.00646 1.23658 1.64429 1.19070 1.00849 1.12825 1.08081 0.88587 1.25382 0.98912 0.95708 0.96989 1.69772 1.15266 1.26950 1.43337 0.88276 0.80533 0.78748 0.85949 1.22687 1.24671 1.11382 0.90843 0.89605 0.91550 0.83953 0.84280 0.84740 0.82478 0.75951 0.90194 0.92624 0.90932 0.93081 0.93718 0.93547 0.89095 0.93632 0.92751 0.92498 0.94222 0.95994 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 9.43 37.16 0.35 -2.17 16 2 C 0.08 1.23 2.91 -27.88 -0.08 1.15 16 3 H 0.11 1.58 6.99 -51.93 -0.36 1.22 16 4 O -0.27 -4.69 9.29 -38.63 -0.36 -5.05 16 5 C 0.33 4.74 7.45 -17.12 -0.13 4.61 16 6 C -0.19 -2.24 10.04 -39.28 -0.39 -2.63 16 7 C -0.04 -0.36 10.17 -39.31 -0.40 -0.76 16 8 C -0.22 -1.81 10.11 -39.43 -0.40 -2.20 16 9 C 0.14 1.37 11.18 -17.56 -0.20 1.17 16 10 N -0.54 -7.10 8.65 -13.33 -0.12 -7.22 16 11 C 0.51 9.72 7.23 -10.99 -0.08 9.64 16 12 O -0.54 -12.14 16.50 -14.35 -0.24 -12.38 16 13 N -0.70 -12.25 4.13 -60.29 -0.25 -12.50 16 14 C 0.12 2.27 4.37 -4.04 -0.02 2.25 16 15 C 0.18 3.15 2.19 -67.98 -0.15 3.00 16 16 H 0.05 0.77 8.06 -51.93 -0.42 0.35 16 17 C -0.14 -2.25 5.06 -28.59 -0.14 -2.40 16 18 C -0.10 -1.52 5.16 -29.79 -0.15 -1.67 16 19 C -0.12 -1.96 4.70 -28.01 -0.13 -2.09 16 20 C -0.13 -2.03 4.86 -27.30 -0.13 -2.16 16 21 C 0.15 2.72 5.41 -2.94 -0.02 2.70 16 22 N -0.60 -12.07 1.64 -164.46 -0.27 -12.34 16 23 C -0.28 -6.95 8.83 -15.06 -0.13 -7.08 16 24 H 0.10 2.63 5.79 -52.49 -0.30 2.32 16 25 C 0.03 0.81 5.50 -17.43 -0.10 0.71 16 26 N -0.91 -27.34 13.97 55.49 0.78 -26.56 16 27 Si 0.83 19.55 23.40 -169.99 -3.98 15.57 16 28 H -0.30 -7.23 7.11 56.52 0.40 -6.83 16 29 H -0.32 -8.11 7.11 56.52 0.40 -7.71 16 30 H -0.19 -3.77 1.49 56.52 0.08 -3.69 16 31 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.09 1.32 7.56 -51.93 -0.39 0.93 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.14 1.53 8.06 -52.48 -0.42 1.10 16 35 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 37 H 0.16 1.06 8.06 -52.48 -0.42 0.64 16 38 H 0.41 6.66 7.49 -40.82 -0.31 6.35 16 39 H 0.08 1.73 7.06 -51.93 -0.37 1.36 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.05 0.74 8.11 -51.93 -0.42 0.32 16 43 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.63 7.35 -51.93 -0.38 0.25 16 45 H 0.09 1.78 4.49 -51.93 -0.23 1.54 16 46 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.05 0.80 8.11 -51.93 -0.42 0.38 16 48 H 0.06 0.81 7.31 -51.93 -0.38 0.43 16 49 H 0.04 0.84 1.51 -51.93 -0.08 0.77 16 50 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 51 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 385.24 15.07 5.81 5.81 Total: -1.00 -32.57 385.24 -9.10 -41.67 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -8.17 Total: 10.94 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -2.30 Total: 2.06 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: 0.14 Total: -58.61 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.60 Total: -17.43 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -3.98 Total: 15.57 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.57 -9.10 -41.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506579058.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.101 kcal (2) G-P(sol) polarization free energy of solvation -32.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds