Wall clock time and date at job start Wed Apr 1 2020 05:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46976 * 2 1 4 4 O 1.42901 * 109.46753 * 240.00379 * 2 1 3 5 5 C 1.35673 * 117.00163 * 90.00229 * 4 2 1 6 6 C 1.38916 * 119.68378 * 179.97438 * 5 4 2 7 7 C 1.38380 * 119.11326 * 179.97438 * 6 5 4 8 8 C 1.38826 * 118.48155 * 359.97438 * 7 6 5 9 9 C 1.38053 * 119.28999 * 0.02562 * 8 7 6 10 10 N 1.31963 * 120.83560 * 359.74086 * 9 8 7 11 11 C 1.50700 * 109.46824 * 120.00298 * 2 1 3 12 12 O 1.21281 * 119.99913 * 120.00005 * 11 2 1 13 13 N 1.34773 * 120.00186 * 299.99336 * 11 2 1 14 14 C 1.46508 * 120.00164 * 180.02562 * 13 11 2 15 15 C 1.53003 * 109.46982 * 180.02562 * 14 13 11 16 16 H 1.09000 * 109.44718 * 294.95256 * 15 14 13 17 17 C 1.54862 * 109.44580 * 175.00099 * 15 14 13 18 18 C 1.47088 * 110.32176 * 168.69345 * 17 15 14 19 19 C 1.52569 * 114.32604 * 62.80335 * 18 17 15 20 20 C 1.50882 * 109.35832 * 274.98712 * 19 18 17 21 21 C 1.53951 * 110.09411 * 91.88606 * 20 19 18 22 22 N 1.44575 * 109.44812 * 54.87211 * 15 14 13 23 23 C 1.36942 * 118.64508 * 30.76356 * 22 15 14 24 24 H 1.08001 * 119.99810 * 324.69847 * 23 22 15 25 25 C 1.38812 * 119.99654 * 144.69499 * 23 22 15 26 26 N 1.31620 * 119.99652 * 184.85162 * 25 23 22 27 27 Si 1.86801 * 120.00248 * 4.85741 * 25 23 22 28 28 H 1.48503 * 109.46818 * 94.81012 * 27 25 23 29 29 H 1.48505 * 109.46824 * 214.80864 * 27 25 23 30 30 H 1.48494 * 109.47028 * 334.81001 * 27 25 23 31 31 H 1.08997 * 109.46976 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47251 * 299.99743 * 1 2 3 33 33 H 1.08996 * 109.47203 * 59.99900 * 1 2 3 34 34 H 1.08006 * 120.44553 * 359.95606 * 6 5 4 35 35 H 1.08001 * 120.75794 * 180.02562 * 7 6 5 36 36 H 1.08002 * 120.35544 * 180.02562 * 8 7 6 37 37 H 1.08003 * 119.57585 * 180.02562 * 9 8 7 38 38 H 0.96999 * 120.00134 * 0.02562 * 13 11 2 39 39 H 1.08997 * 109.46840 * 300.00893 * 14 13 11 40 40 H 1.09001 * 109.46351 * 60.00347 * 14 13 11 41 41 H 1.09000 * 109.33260 * 288.95807 * 17 15 14 42 42 H 1.09006 * 109.32737 * 48.43168 * 17 15 14 43 43 H 1.08997 * 108.51459 * 184.06185 * 18 17 15 44 44 H 1.09004 * 108.51150 * 301.70321 * 18 17 15 45 45 H 1.08996 * 109.48833 * 34.95171 * 19 18 17 46 46 H 1.08994 * 109.49269 * 155.00181 * 19 18 17 47 47 H 1.08997 * 109.36927 * 212.07337 * 20 19 18 48 48 H 1.08993 * 109.36879 * 331.82185 * 20 19 18 49 49 H 1.09000 * 108.94805 * 80.11939 * 21 20 19 50 50 H 1.08999 * 108.95077 * 198.83950 * 21 20 19 51 51 H 0.97002 * 120.00371 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.2116 0.0830 -2.2742 6 6 2.6746 -0.5147 -3.4396 7 6 2.8794 0.2681 -4.5622 8 6 2.6120 1.6278 -4.4790 9 6 2.1538 2.1543 -3.2879 10 7 1.9638 1.3814 -2.2353 11 6 2.0323 -0.7105 1.2304 12 8 2.7295 -1.6966 1.1191 13 7 1.7068 -0.2500 2.4545 14 6 2.1956 -0.9404 3.6508 15 6 1.6850 -0.2196 4.9000 16 1 2.1199 0.7789 4.9461 17 6 2.0955 -1.0196 6.1609 18 6 1.8566 -0.2210 7.3728 19 6 0.3927 0.1358 7.6119 20 6 0.0485 1.3828 6.8355 21 6 -0.4995 1.0069 5.4468 22 7 0.2443 -0.1144 4.8401 23 6 -0.4592 -1.0955 4.1938 24 1 -0.0447 -1.5679 3.3155 25 6 -1.7051 -1.4829 4.6676 26 7 -2.3391 -2.4898 4.1051 27 14 -2.4820 -0.5750 6.1035 28 1 -3.3942 0.4776 5.5884 29 1 -3.2522 -1.5332 6.9366 30 1 -1.4173 0.0523 6.9269 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 2.8723 -1.5761 -3.4690 35 1 3.2383 -0.1690 -5.4823 36 1 2.7608 2.2668 -5.3368 37 1 1.9439 3.2115 -3.2181 38 1 1.1489 0.5385 2.5436 39 1 1.8326 -1.9682 3.6508 40 1 3.2856 -0.9400 3.6505 41 1 1.5098 -1.9374 6.2124 42 1 3.1538 -1.2731 6.0986 43 1 2.2216 -0.7810 8.2338 44 1 2.4279 0.7041 7.2958 45 1 -0.2410 -0.6863 7.2792 46 1 0.2304 0.3126 8.6751 47 1 -0.7057 1.9510 7.3799 48 1 0.9438 1.9927 6.7157 49 1 -1.5478 0.7246 5.5445 50 1 -0.4266 1.8744 4.7908 51 1 -3.2099 -2.7604 4.4359 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506579058.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:01 Heat of formation + Delta-G solvation = 15.831712 kcal Electronic energy + Delta-G solvation = -31901.842028 eV Core-core repulsion = 27803.681763 eV Total energy + Delta-G solvation = -4098.160265 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.82584 -40.92488 -40.04649 -38.70584 -36.27976 -35.21421 -34.05113 -33.43174 -33.23577 -32.68529 -30.95680 -28.86601 -27.36302 -25.96028 -25.42611 -24.56169 -24.06280 -23.26928 -21.76422 -21.34934 -20.84465 -19.57863 -19.04783 -17.98762 -17.50230 -17.40610 -17.13217 -16.92192 -16.67211 -16.60467 -16.06829 -15.74992 -15.44819 -15.40398 -15.00423 -14.77132 -14.54752 -14.45281 -14.21782 -13.99082 -13.78034 -13.64435 -13.47728 -13.41147 -13.27626 -12.94038 -12.82966 -12.77067 -12.42506 -12.21500 -12.14608 -11.93134 -11.57888 -11.30959 -11.25610 -11.15253 -10.90911 -10.78936 -10.63855 -10.56661 -10.01075 -9.93009 -9.48668 -8.69510 -8.00214 -5.48926 0.21474 0.33917 1.37504 1.43483 1.47928 1.57750 1.65255 2.54376 2.56955 2.84343 3.21773 3.28420 3.31525 3.64010 3.85624 3.93806 3.95226 4.04569 4.05654 4.12692 4.19403 4.24126 4.27649 4.36548 4.36750 4.46844 4.53041 4.61301 4.64252 4.71951 4.80629 4.82394 4.96106 5.02165 5.04898 5.08810 5.12472 5.17151 5.21025 5.29516 5.37837 5.42917 5.49557 5.53954 5.56513 5.58721 5.73746 6.06711 6.19809 6.34351 6.55895 6.87958 7.10001 7.20024 7.77846 8.07915 9.14574 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016556 B = 0.002783 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.844697 B =10056.952841 C =10528.815777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.089 3.911 3 H 0.128 0.872 4 O -0.305 6.305 5 C 0.290 3.710 6 C -0.208 4.208 7 C -0.035 4.035 8 C -0.203 4.203 9 C 0.127 3.873 10 N -0.561 5.561 11 C 0.507 3.493 12 O -0.581 6.581 13 N -0.687 5.687 14 C 0.128 3.872 15 C 0.184 3.816 16 H 0.088 0.912 17 C -0.133 4.133 18 C -0.099 4.099 19 C -0.128 4.128 20 C -0.126 4.126 21 C 0.134 3.866 22 N -0.607 5.607 23 C -0.236 4.236 24 H 0.062 0.938 25 C -0.043 4.043 26 N -0.974 5.974 27 Si 0.871 3.129 28 H -0.310 1.310 29 H -0.353 1.353 30 H -0.113 1.113 31 H 0.041 0.959 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.140 0.860 35 H 0.175 0.825 36 H 0.174 0.826 37 H 0.189 0.811 38 H 0.412 0.588 39 H 0.033 0.967 40 H 0.074 0.926 41 H 0.032 0.968 42 H 0.074 0.926 43 H 0.058 0.942 44 H 0.076 0.924 45 H 0.052 0.948 46 H 0.070 0.930 47 H 0.075 0.925 48 H 0.090 0.910 49 H 0.014 0.986 50 H 0.046 0.954 51 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.252 15.844 -8.721 21.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.029 3.971 3 H 0.145 0.855 4 O -0.212 6.212 5 C 0.113 3.887 6 C -0.228 4.228 7 C -0.061 4.061 8 C -0.223 4.223 9 C -0.029 4.029 10 N -0.285 5.285 11 C 0.293 3.707 12 O -0.461 6.461 13 N -0.338 5.338 14 C 0.003 3.997 15 C 0.077 3.923 16 H 0.106 0.894 17 C -0.173 4.173 18 C -0.137 4.137 19 C -0.165 4.165 20 C -0.165 4.165 21 C 0.011 3.989 22 N -0.331 5.331 23 C -0.366 4.366 24 H 0.079 0.921 25 C -0.236 4.236 26 N -0.621 5.621 27 Si 0.707 3.293 28 H -0.240 1.240 29 H -0.287 1.287 30 H -0.036 1.036 31 H 0.060 0.940 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.158 0.842 35 H 0.192 0.808 36 H 0.192 0.808 37 H 0.206 0.794 38 H 0.249 0.751 39 H 0.051 0.949 40 H 0.092 0.908 41 H 0.051 0.949 42 H 0.092 0.908 43 H 0.077 0.923 44 H 0.095 0.905 45 H 0.070 0.930 46 H 0.089 0.911 47 H 0.094 0.906 48 H 0.108 0.892 49 H 0.032 0.968 50 H 0.064 0.936 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 12.405 15.188 -7.935 21.155 hybrid contribution -1.655 -0.880 -0.282 1.895 sum 10.750 14.308 -8.217 19.693 Atomic orbital electron populations 1.22024 0.91828 1.02447 1.04358 1.21950 0.95779 0.97680 0.81672 0.85478 1.86351 1.80393 1.35939 1.18562 1.20242 0.93118 0.88225 0.87137 1.21352 1.06860 1.02812 0.91823 1.21860 0.92898 0.93689 0.97613 1.22425 1.03128 0.96294 1.00411 1.23084 0.92194 1.00298 0.87278 1.67230 1.22400 1.04489 1.34411 1.20634 0.80133 0.84411 0.85517 1.90654 1.40357 1.27765 1.87373 1.45603 1.52032 1.31874 1.04251 1.21560 0.97583 0.96208 0.84310 1.20674 0.82898 0.97666 0.91041 0.89401 1.21294 1.00544 0.99127 0.96341 1.20288 0.95802 1.00580 0.96986 1.21451 0.97131 0.98243 0.99647 1.21848 1.02229 0.97711 0.94678 1.21688 0.92870 0.89820 0.94528 1.43981 1.01671 1.23209 1.64260 1.18893 0.99831 1.11777 1.06068 0.92086 1.26124 1.00309 0.96958 1.00203 1.69976 1.15623 1.30288 1.46173 0.87889 0.80601 0.76770 0.84061 1.24022 1.28681 1.03616 0.93958 0.89477 0.89975 0.84191 0.80770 0.80808 0.79449 0.75077 0.94875 0.90784 0.94947 0.90770 0.92334 0.90529 0.92972 0.91100 0.90619 0.89152 0.96844 0.93559 0.94256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.91 9.43 71.98 0.68 -4.23 16 2 C 0.09 3.00 2.91 29.85 0.09 3.09 16 3 H 0.13 3.73 6.99 -2.39 -0.02 3.71 16 4 O -0.31 -11.04 9.29 -70.87 -0.66 -11.70 16 5 C 0.29 8.51 7.45 84.79 0.63 9.14 16 6 C -0.21 -4.84 10.04 22.47 0.23 -4.62 16 7 C -0.04 -0.53 10.17 22.44 0.23 -0.30 16 8 C -0.20 -2.56 10.11 22.37 0.23 -2.34 16 9 C 0.13 2.14 11.18 84.63 0.95 3.08 16 10 N -0.56 -14.21 8.65 -308.96 -2.67 -16.88 16 11 C 0.51 20.12 7.23 87.66 0.63 20.75 16 12 O -0.58 -27.90 16.50 16.00 0.26 -27.64 16 13 N -0.69 -24.58 4.13 -463.05 -1.91 -26.49 16 14 C 0.13 4.67 4.37 86.38 0.38 5.05 16 15 C 0.18 5.91 2.19 45.99 0.10 6.01 16 16 H 0.09 2.27 8.06 -2.39 -0.02 2.26 16 17 C -0.13 -4.02 5.06 29.39 0.15 -3.87 16 18 C -0.10 -2.48 5.16 28.61 0.15 -2.33 16 19 C -0.13 -3.59 4.70 29.76 0.14 -3.45 16 20 C -0.13 -3.25 4.86 30.23 0.15 -3.11 16 21 C 0.13 4.56 5.41 86.49 0.47 5.03 16 22 N -0.61 -23.54 1.64 -674.24 -1.11 -24.65 16 23 C -0.24 -12.16 8.83 84.03 0.74 -11.41 16 24 H 0.06 3.58 5.79 -2.91 -0.02 3.56 16 25 C -0.04 -2.45 5.50 84.86 0.47 -1.99 16 26 N -0.97 -63.04 13.97 21.65 0.30 -62.74 16 27 Si 0.87 41.49 23.40 68.60 1.61 43.09 16 28 H -0.31 -15.13 7.11 99.48 0.71 -14.43 16 29 H -0.35 -18.89 7.11 99.48 0.71 -18.18 16 30 H -0.11 -4.22 1.49 99.48 0.15 -4.07 16 31 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.09 2.78 7.56 -2.38 -0.02 2.76 16 33 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 35 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 36 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 37 H 0.19 1.84 8.06 -2.91 -0.02 1.82 16 38 H 0.41 13.35 7.49 -92.71 -0.69 12.65 16 39 H 0.03 1.52 7.06 -2.39 -0.02 1.51 16 40 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.07 1.92 8.11 -2.38 -0.02 1.90 16 43 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.08 1.54 7.35 -2.39 -0.02 1.52 16 45 H 0.05 1.90 4.49 -2.39 -0.01 1.89 16 46 H 0.07 1.69 8.14 -2.39 -0.02 1.68 16 47 H 0.08 1.73 8.11 -2.39 -0.02 1.71 16 48 H 0.09 1.85 7.31 -2.39 -0.02 1.83 16 49 H 0.01 0.56 1.51 -2.39 0.00 0.56 16 50 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 51 H 0.25 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -81.10 385.24 1.90 -79.20 By element: Atomic # 1 Polarization: 33.61 SS G_CDS: -0.31 Total: 33.31 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: 6.40 Total: 14.51 kcal Atomic # 7 Polarization: -125.37 SS G_CDS: -5.39 Total: -130.76 kcal Atomic # 8 Polarization: -38.95 SS G_CDS: -0.39 Total: -39.34 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 1.61 Total: 43.09 kcal Total: -81.10 1.90 -79.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506579058.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.027 kcal (2) G-P(sol) polarization free energy of solvation -81.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds