Wall clock time and date at job start Wed Apr 1 2020 05:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46725 * 2 1 4 4 O 1.42903 * 109.47004 * 119.99255 * 2 1 3 5 5 C 1.35676 * 117.00111 * 270.00550 * 4 2 1 6 6 C 1.38925 * 119.67971 * 179.73189 * 5 4 2 7 7 C 1.38386 * 119.10474 * 179.75355 * 6 5 4 8 8 C 1.38821 * 118.48606 * 0.50274 * 7 6 5 9 9 C 1.38041 * 119.29097 * 359.73809 * 8 7 6 10 10 N 1.31958 * 120.83593 * 0.02562 * 9 8 7 11 11 C 1.50695 * 109.47650 * 239.99749 * 2 1 3 12 12 O 1.21282 * 119.99686 * 245.00451 * 11 2 1 13 13 N 1.34770 * 120.00269 * 64.99581 * 11 2 1 14 14 C 1.46499 * 120.00565 * 180.02562 * 13 11 2 15 15 C 1.52994 * 109.47414 * 180.02562 * 14 13 11 16 16 H 1.09004 * 109.42997 * 64.93239 * 15 14 13 17 17 C 1.55417 * 109.71194 * 185.08192 * 15 14 13 18 18 C 1.47094 * 110.35150 * 191.29264 * 17 15 14 19 19 C 1.52563 * 114.32486 * 297.12513 * 18 17 15 20 20 C 1.50880 * 109.35645 * 85.01633 * 19 18 17 21 21 C 1.53941 * 110.09565 * 268.11092 * 20 19 18 22 22 N 1.44584 * 109.44796 * 304.99726 * 15 14 13 23 23 C 1.36933 * 118.64373 * 329.24068 * 22 15 14 24 24 H 1.08001 * 119.99583 * 331.55872 * 23 22 15 25 25 C 1.38811 * 119.99890 * 151.55975 * 23 22 15 26 26 N 1.31615 * 120.00241 * 344.42939 * 25 23 22 27 27 Si 1.86799 * 119.99745 * 164.43136 * 25 23 22 28 28 H 1.48503 * 109.47215 * 266.55044 * 27 25 23 29 29 H 1.48503 * 109.47127 * 146.54988 * 27 25 23 30 30 H 1.48500 * 109.47521 * 26.55061 * 27 25 23 31 31 H 1.08996 * 109.47208 * 300.00159 * 1 2 3 32 32 H 1.08996 * 109.46751 * 60.00511 * 1 2 3 33 33 H 1.08999 * 109.46893 * 180.02562 * 1 2 3 34 34 H 1.07997 * 120.45034 * 359.97438 * 6 5 4 35 35 H 1.08002 * 120.74997 * 180.23767 * 7 6 5 36 36 H 1.08008 * 120.35545 * 179.70747 * 8 7 6 37 37 H 1.08004 * 119.58662 * 179.97438 * 9 8 7 38 38 H 0.97007 * 119.99411 * 0.02562 * 13 11 2 39 39 H 1.09000 * 109.46946 * 60.00224 * 14 13 11 40 40 H 1.09007 * 109.47053 * 300.00351 * 14 13 11 41 41 H 1.09009 * 109.37442 * 70.98538 * 17 15 14 42 42 H 1.09000 * 109.11902 * 311.43864 * 17 15 14 43 43 H 1.08999 * 108.51399 * 175.86558 * 18 17 15 44 44 H 1.09000 * 108.38677 * 58.28685 * 18 17 15 45 45 H 1.08998 * 109.49283 * 325.04724 * 19 18 17 46 46 H 1.09000 * 109.50705 * 204.99334 * 19 18 17 47 47 H 1.09004 * 109.36561 * 147.91935 * 20 19 18 48 48 H 1.08998 * 109.26603 * 28.24046 * 20 19 18 49 49 H 1.09005 * 108.94934 * 279.88116 * 21 20 19 50 50 H 1.08999 * 108.94986 * 161.24938 * 21 20 19 51 51 H 0.96996 * 120.00102 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.2115 0.0832 2.2742 6 6 2.6687 -0.5156 3.4415 7 6 2.8789 0.2683 4.5624 8 6 2.6129 1.6282 4.4787 9 6 2.1555 2.1548 3.2874 10 7 1.9692 1.3826 2.2338 11 6 2.0325 -0.7104 -1.2303 12 8 2.6531 -1.7467 -1.1212 13 7 1.7921 -0.1944 -2.4519 14 6 2.2800 -0.8852 -3.6481 15 6 1.8759 -0.0948 -4.8941 16 1 2.3815 0.8708 -4.8908 17 6 2.2776 -0.8861 -6.1700 18 6 2.1457 -0.0351 -7.3625 19 6 0.7221 0.4351 -7.6447 20 6 0.4377 1.6795 -6.8402 21 6 -0.1913 1.3021 -5.4868 22 7 0.4448 0.1110 -4.8905 23 6 -0.3530 -0.8353 -4.3047 24 1 -0.0335 -1.8665 -4.2733 25 6 -1.5723 -0.4691 -3.7515 26 7 -1.8314 0.7985 -3.5101 27 14 -2.8454 -1.7757 -3.3495 28 1 -3.7766 -1.9289 -4.4961 29 1 -3.6090 -1.3681 -2.1428 30 1 -2.1629 -3.0687 -3.0899 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 2.8610 -1.5778 3.4727 35 1 3.2375 -0.1688 5.4826 36 1 2.7617 2.2673 5.3365 37 1 1.9466 3.2121 3.2171 38 1 1.2959 0.6346 -2.5391 39 1 1.8450 -1.8836 -3.6938 40 1 3.3664 -0.9638 -3.6045 41 1 1.6298 -1.7566 -6.2746 42 1 3.3122 -1.2158 -6.0747 43 1 2.5038 -0.5934 -8.2275 44 1 2.7801 0.8415 -7.2311 45 1 0.0180 -0.3482 -7.3641 46 1 0.6156 0.6563 -8.7067 47 1 -0.2511 2.3179 -7.3935 48 1 1.3700 2.2174 -6.6682 49 1 -1.2524 1.1005 -5.6335 50 1 -0.0839 2.1418 -4.8002 51 1 -2.6833 1.0542 -3.1231 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506579060.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:08 Heat of formation + Delta-G solvation = -18.177654 kcal Electronic energy + Delta-G solvation = -32022.428805 eV Core-core repulsion = 27922.793783 eV Total energy + Delta-G solvation = -4099.635022 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.68964 -39.31749 -38.22891 -37.31847 -34.46515 -33.47502 -32.58848 -32.28357 -31.28601 -30.68630 -29.86559 -27.01134 -25.70004 -24.52047 -23.63415 -23.46952 -22.88236 -21.78054 -20.01011 -19.45054 -19.18504 -18.41277 -17.40704 -16.36511 -16.13288 -15.81633 -15.59222 -15.46792 -15.11212 -14.67612 -14.50305 -14.31859 -14.02818 -13.71182 -13.56979 -13.33106 -13.17117 -13.04962 -12.83873 -12.62429 -12.08529 -12.02334 -11.96325 -11.87751 -11.49288 -11.40837 -11.23556 -11.10835 -10.89631 -10.80095 -10.59835 -10.20705 -10.04326 -10.03459 -9.99161 -9.70900 -9.63949 -9.58852 -9.53983 -9.13162 -8.49833 -8.43812 -8.21710 -6.71826 -5.84356 -3.29087 1.08712 1.20098 2.85846 3.21109 3.34471 3.42873 3.46237 3.72624 4.03483 4.28159 4.46106 4.73394 4.94600 5.04444 5.15100 5.18685 5.22078 5.33610 5.37744 5.42069 5.43682 5.49031 5.63116 5.64147 5.84428 5.88529 6.00296 6.05530 6.07745 6.10069 6.11547 6.14640 6.30657 6.37377 6.40522 6.55932 6.60836 6.64245 6.65008 6.69373 6.75075 6.83612 6.98474 7.09455 7.20824 7.33726 7.38970 7.64288 7.81160 7.81739 8.27477 8.40754 8.88136 9.18519 9.82650 10.28212 11.21862 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013147 B = 0.003149 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.279852 B = 8888.686167 C = 9694.245133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.077 3.923 3 H 0.108 0.892 4 O -0.277 6.277 5 C 0.330 3.670 6 C -0.193 4.193 7 C -0.042 4.042 8 C -0.222 4.222 9 C 0.141 3.859 10 N -0.540 5.540 11 C 0.514 3.486 12 O -0.548 6.548 13 N -0.683 5.683 14 C 0.131 3.869 15 C 0.173 3.827 16 H 0.045 0.955 17 C -0.136 4.136 18 C -0.100 4.100 19 C -0.106 4.106 20 C -0.143 4.143 21 C 0.180 3.820 22 N -0.583 5.583 23 C -0.249 4.249 24 H 0.063 0.937 25 C 0.016 3.984 26 N -0.901 5.901 27 Si 0.887 3.113 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.280 1.280 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.134 0.866 37 H 0.158 0.842 38 H 0.412 0.588 39 H 0.069 0.931 40 H 0.050 0.950 41 H 0.063 0.937 42 H 0.048 0.952 43 H 0.040 0.960 44 H 0.046 0.954 45 H 0.074 0.926 46 H 0.039 0.961 47 H 0.048 0.952 48 H 0.043 0.957 49 H 0.073 0.927 50 H 0.025 0.975 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.802 4.396 7.990 12.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.018 3.982 3 H 0.125 0.875 4 O -0.182 6.182 5 C 0.151 3.849 6 C -0.214 4.214 7 C -0.067 4.067 8 C -0.242 4.242 9 C -0.015 4.015 10 N -0.264 5.264 11 C 0.298 3.702 12 O -0.427 6.427 13 N -0.334 5.334 14 C 0.007 3.993 15 C 0.064 3.936 16 H 0.063 0.937 17 C -0.177 4.177 18 C -0.138 4.138 19 C -0.144 4.144 20 C -0.182 4.182 21 C 0.056 3.944 22 N -0.305 5.305 23 C -0.379 4.379 24 H 0.081 0.919 25 C -0.183 4.183 26 N -0.545 5.545 27 Si 0.717 3.283 28 H -0.216 1.216 29 H -0.218 1.218 30 H -0.205 1.205 31 H 0.081 0.919 32 H 0.119 0.881 33 H 0.082 0.918 34 H 0.159 0.841 35 H 0.156 0.844 36 H 0.152 0.848 37 H 0.175 0.825 38 H 0.249 0.751 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.065 0.935 45 H 0.092 0.908 46 H 0.058 0.942 47 H 0.067 0.933 48 H 0.062 0.938 49 H 0.091 0.909 50 H 0.043 0.957 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.823 3.820 7.274 11.345 hybrid contribution -0.903 -0.480 0.831 1.318 sum 6.920 3.340 8.105 11.169 Atomic orbital electron populations 1.22156 0.91631 1.03663 1.04441 1.22138 0.96297 0.97437 0.82367 0.87479 1.86381 1.79410 1.34636 1.17804 1.19983 0.90292 0.87340 0.87310 1.21102 1.06615 1.02169 0.91508 1.21379 0.94360 0.93459 0.97553 1.21934 1.06119 0.96210 0.99941 1.22436 0.92442 0.99228 0.87371 1.67327 1.21579 1.04875 1.32612 1.19982 0.80258 0.85467 0.84515 1.90658 1.41584 1.23578 1.86842 1.45530 1.55770 1.27938 1.04160 1.21481 0.96379 0.97374 0.84070 1.20624 0.86692 0.95390 0.90875 0.93706 1.21456 0.99710 0.99776 0.96716 1.20282 0.97091 0.99071 0.97362 1.20943 0.97101 0.99013 0.97340 1.22064 0.99987 0.96783 0.99341 1.20995 0.96882 0.88130 0.88420 1.43738 0.99080 1.23097 1.64632 1.19056 0.99642 0.88955 1.30214 0.91936 1.24870 0.99533 0.95535 0.98387 1.70021 1.23481 1.14528 1.46498 0.86515 0.82277 0.81951 0.77545 1.21641 1.21792 1.20486 0.91886 0.88141 0.91766 0.84069 0.84367 0.84783 0.82467 0.75101 0.91276 0.93166 0.91794 0.93362 0.94096 0.93546 0.90777 0.94242 0.93280 0.93820 0.90875 0.95733 0.93726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.49 37.16 0.35 -2.55 16 2 C 0.08 1.39 2.90 -27.89 -0.08 1.31 16 3 H 0.11 1.81 6.98 -51.93 -0.36 1.45 16 4 O -0.28 -5.04 9.30 -38.59 -0.36 -5.40 16 5 C 0.33 5.10 7.45 -17.12 -0.13 4.98 16 6 C -0.19 -2.41 10.04 -39.27 -0.39 -2.81 16 7 C -0.04 -0.40 10.17 -39.31 -0.40 -0.80 16 8 C -0.22 -2.01 10.10 -39.44 -0.40 -2.41 16 9 C 0.14 1.54 11.17 -17.57 -0.20 1.34 16 10 N -0.54 -7.80 8.65 -13.33 -0.12 -7.92 16 11 C 0.51 10.46 7.18 -10.99 -0.08 10.38 16 12 O -0.55 -12.83 16.51 -14.31 -0.24 -13.06 16 13 N -0.68 -13.29 4.68 -60.30 -0.28 -13.58 16 14 C 0.13 2.50 4.55 -4.05 -0.02 2.49 16 15 C 0.17 3.18 2.21 -67.67 -0.15 3.03 16 16 H 0.04 0.81 8.07 -51.93 -0.42 0.39 16 17 C -0.14 -2.25 5.09 -28.28 -0.14 -2.39 16 18 C -0.10 -1.55 5.16 -29.79 -0.15 -1.70 16 19 C -0.11 -1.76 5.51 -28.02 -0.15 -1.92 16 20 C -0.14 -2.47 5.71 -27.30 -0.16 -2.62 16 21 C 0.18 3.78 4.66 -2.95 -0.01 3.76 16 22 N -0.58 -12.25 1.76 -164.12 -0.29 -12.54 16 23 C -0.25 -5.93 7.62 -15.06 -0.11 -6.04 16 24 H 0.06 1.58 6.75 -52.49 -0.35 1.23 16 25 C 0.02 0.38 4.86 -17.43 -0.08 0.30 16 26 N -0.90 -22.60 11.13 55.49 0.62 -21.98 16 27 Si 0.89 20.82 29.58 -169.99 -5.03 15.79 16 28 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 29 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 30 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.10 1.96 7.92 -51.93 -0.41 1.55 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 37 H 0.16 1.25 8.06 -52.48 -0.42 0.83 16 38 H 0.41 8.16 7.86 -40.82 -0.32 7.84 16 39 H 0.07 1.47 6.84 -51.93 -0.36 1.11 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 42 H 0.05 0.72 8.11 -51.93 -0.42 0.29 16 43 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.05 0.69 7.35 -51.93 -0.38 0.30 16 45 H 0.07 1.42 7.48 -51.93 -0.39 1.03 16 46 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 48 H 0.04 0.72 7.31 -51.93 -0.38 0.34 16 49 H 0.07 1.75 6.46 -51.93 -0.34 1.41 16 50 H 0.02 0.55 8.02 -51.93 -0.42 0.14 16 51 H 0.25 6.37 8.31 -40.82 -0.34 6.03 16 LS Contribution 403.51 15.07 6.08 6.08 Total: -1.00 -28.10 403.51 -10.26 -38.36 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -8.33 Total: 9.91 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -2.31 Total: 4.34 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: -0.07 Total: -56.01 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.60 Total: -18.47 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.79 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -28.10 -10.26 -38.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506579060.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.182 kcal (2) G-P(sol) polarization free energy of solvation -28.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds