Wall clock time and date at job start Wed Apr 1 2020 05:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46725 * 2 1 4 4 O 1.42903 * 109.47004 * 119.99255 * 2 1 3 5 5 C 1.35676 * 117.00111 * 270.00550 * 4 2 1 6 6 C 1.38925 * 119.67971 * 179.73189 * 5 4 2 7 7 C 1.38386 * 119.10474 * 179.75355 * 6 5 4 8 8 C 1.38821 * 118.48606 * 0.50274 * 7 6 5 9 9 C 1.38041 * 119.29097 * 359.73809 * 8 7 6 10 10 N 1.31958 * 120.83593 * 0.02562 * 9 8 7 11 11 C 1.50695 * 109.47650 * 239.99749 * 2 1 3 12 12 O 1.21282 * 119.99686 * 245.00451 * 11 2 1 13 13 N 1.34770 * 120.00269 * 64.99581 * 11 2 1 14 14 C 1.46499 * 120.00565 * 180.02562 * 13 11 2 15 15 C 1.52994 * 109.47414 * 180.02562 * 14 13 11 16 16 H 1.09004 * 109.42997 * 64.93239 * 15 14 13 17 17 C 1.55417 * 109.71194 * 185.08192 * 15 14 13 18 18 C 1.47094 * 110.35150 * 191.29264 * 17 15 14 19 19 C 1.52563 * 114.32486 * 297.12513 * 18 17 15 20 20 C 1.50880 * 109.35645 * 85.01633 * 19 18 17 21 21 C 1.53941 * 110.09565 * 268.11092 * 20 19 18 22 22 N 1.44584 * 109.44796 * 304.99726 * 15 14 13 23 23 C 1.36933 * 118.64373 * 329.24068 * 22 15 14 24 24 H 1.08001 * 119.99583 * 331.55872 * 23 22 15 25 25 C 1.38811 * 119.99890 * 151.55975 * 23 22 15 26 26 N 1.31615 * 120.00241 * 344.42939 * 25 23 22 27 27 Si 1.86799 * 119.99745 * 164.43136 * 25 23 22 28 28 H 1.48503 * 109.47215 * 266.55044 * 27 25 23 29 29 H 1.48503 * 109.47127 * 146.54988 * 27 25 23 30 30 H 1.48500 * 109.47521 * 26.55061 * 27 25 23 31 31 H 1.08996 * 109.47208 * 300.00159 * 1 2 3 32 32 H 1.08996 * 109.46751 * 60.00511 * 1 2 3 33 33 H 1.08999 * 109.46893 * 180.02562 * 1 2 3 34 34 H 1.07997 * 120.45034 * 359.97438 * 6 5 4 35 35 H 1.08002 * 120.74997 * 180.23767 * 7 6 5 36 36 H 1.08008 * 120.35545 * 179.70747 * 8 7 6 37 37 H 1.08004 * 119.58662 * 179.97438 * 9 8 7 38 38 H 0.97007 * 119.99411 * 0.02562 * 13 11 2 39 39 H 1.09000 * 109.46946 * 60.00224 * 14 13 11 40 40 H 1.09007 * 109.47053 * 300.00351 * 14 13 11 41 41 H 1.09009 * 109.37442 * 70.98538 * 17 15 14 42 42 H 1.09000 * 109.11902 * 311.43864 * 17 15 14 43 43 H 1.08999 * 108.51399 * 175.86558 * 18 17 15 44 44 H 1.09000 * 108.38677 * 58.28685 * 18 17 15 45 45 H 1.08998 * 109.49283 * 325.04724 * 19 18 17 46 46 H 1.09000 * 109.50705 * 204.99334 * 19 18 17 47 47 H 1.09004 * 109.36561 * 147.91935 * 20 19 18 48 48 H 1.08998 * 109.26603 * 28.24046 * 20 19 18 49 49 H 1.09005 * 108.94934 * 279.88116 * 21 20 19 50 50 H 1.08999 * 108.94986 * 161.24938 * 21 20 19 51 51 H 0.96996 * 120.00102 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.2115 0.0832 2.2742 6 6 2.6687 -0.5156 3.4415 7 6 2.8789 0.2683 4.5624 8 6 2.6129 1.6282 4.4787 9 6 2.1555 2.1548 3.2874 10 7 1.9692 1.3826 2.2338 11 6 2.0325 -0.7104 -1.2303 12 8 2.6531 -1.7467 -1.1212 13 7 1.7921 -0.1944 -2.4519 14 6 2.2800 -0.8852 -3.6481 15 6 1.8759 -0.0948 -4.8941 16 1 2.3815 0.8708 -4.8908 17 6 2.2776 -0.8861 -6.1700 18 6 2.1457 -0.0351 -7.3625 19 6 0.7221 0.4351 -7.6447 20 6 0.4377 1.6795 -6.8402 21 6 -0.1913 1.3021 -5.4868 22 7 0.4448 0.1110 -4.8905 23 6 -0.3530 -0.8353 -4.3047 24 1 -0.0335 -1.8665 -4.2733 25 6 -1.5723 -0.4691 -3.7515 26 7 -1.8314 0.7985 -3.5101 27 14 -2.8454 -1.7757 -3.3495 28 1 -3.7766 -1.9289 -4.4961 29 1 -3.6090 -1.3681 -2.1428 30 1 -2.1629 -3.0687 -3.0899 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 2.8610 -1.5778 3.4727 35 1 3.2375 -0.1688 5.4826 36 1 2.7617 2.2673 5.3365 37 1 1.9466 3.2121 3.2171 38 1 1.2959 0.6346 -2.5391 39 1 1.8450 -1.8836 -3.6938 40 1 3.3664 -0.9638 -3.6045 41 1 1.6298 -1.7566 -6.2746 42 1 3.3122 -1.2158 -6.0747 43 1 2.5038 -0.5934 -8.2275 44 1 2.7801 0.8415 -7.2311 45 1 0.0180 -0.3482 -7.3641 46 1 0.6156 0.6563 -8.7067 47 1 -0.2511 2.3179 -7.3935 48 1 1.3700 2.2174 -6.6682 49 1 -1.2524 1.1005 -5.6335 50 1 -0.0839 2.1418 -4.8002 51 1 -2.6833 1.0542 -3.1231 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506579060.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:07 Heat of formation + Delta-G solvation = -33.638329 kcal Electronic energy + Delta-G solvation = -32023.099230 eV Core-core repulsion = 27922.793783 eV Total energy + Delta-G solvation = -4100.305447 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.79567 -40.77274 -39.67475 -38.63895 -36.02512 -35.20655 -33.82452 -33.40551 -32.66713 -32.37969 -30.93427 -28.63533 -27.32755 -25.83666 -25.17838 -24.56840 -24.04570 -23.16040 -21.52438 -20.90968 -20.77552 -19.55659 -18.85015 -17.81744 -17.40838 -17.24808 -16.91202 -16.69188 -16.61157 -16.12832 -15.99264 -15.61013 -15.43336 -15.20972 -15.13851 -14.60800 -14.51308 -14.32405 -14.10011 -13.95371 -13.67171 -13.39822 -13.38779 -13.14737 -12.92443 -12.88373 -12.80440 -12.76750 -12.70911 -12.36354 -12.20138 -11.99842 -11.53261 -11.38011 -11.30434 -11.18637 -11.04500 -10.90397 -10.72915 -10.54710 -10.32494 -9.87913 -9.48524 -8.51995 -7.76941 -5.19929 0.21271 0.34519 1.39862 1.46862 1.50258 1.51941 1.64982 2.53365 2.63797 2.84687 3.29557 3.37543 3.60606 3.70665 3.90871 3.95479 4.05504 4.05916 4.09201 4.12739 4.24191 4.28794 4.38063 4.44030 4.51186 4.61424 4.62929 4.66961 4.69488 4.81231 4.82589 5.02868 5.07845 5.08539 5.10298 5.15277 5.26239 5.28576 5.28691 5.39974 5.44390 5.53567 5.57161 5.62374 5.70552 5.77849 5.82404 5.93276 6.20279 6.50185 6.63796 6.89635 7.24977 7.30062 8.02898 8.41693 9.25908 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013147 B = 0.003149 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.279852 B = 8888.686167 C = 9694.245133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.091 3.909 3 H 0.117 0.883 4 O -0.303 6.303 5 C 0.289 3.711 6 C -0.205 4.205 7 C -0.035 4.035 8 C -0.202 4.202 9 C 0.125 3.875 10 N -0.565 5.565 11 C 0.510 3.490 12 O -0.583 6.583 13 N -0.678 5.678 14 C 0.133 3.867 15 C 0.174 3.826 16 H 0.059 0.941 17 C -0.128 4.128 18 C -0.100 4.100 19 C -0.103 4.103 20 C -0.132 4.132 21 C 0.189 3.811 22 N -0.587 5.587 23 C -0.235 4.235 24 H 0.045 0.955 25 C -0.014 4.014 26 N -0.910 5.910 27 Si 0.919 3.081 28 H -0.292 1.292 29 H -0.296 1.296 30 H -0.289 1.289 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.045 0.955 34 H 0.144 0.856 35 H 0.177 0.823 36 H 0.175 0.825 37 H 0.185 0.815 38 H 0.411 0.589 39 H 0.042 0.958 40 H 0.067 0.933 41 H 0.042 0.958 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.042 0.958 46 H 0.062 0.938 47 H 0.060 0.940 48 H 0.059 0.941 49 H 0.038 0.962 50 H 0.005 0.995 51 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.626 6.005 8.784 14.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.031 3.969 3 H 0.135 0.865 4 O -0.210 6.210 5 C 0.111 3.889 6 C -0.226 4.226 7 C -0.060 4.060 8 C -0.222 4.222 9 C -0.031 4.031 10 N -0.289 5.289 11 C 0.295 3.705 12 O -0.464 6.464 13 N -0.328 5.328 14 C 0.009 3.991 15 C 0.066 3.934 16 H 0.077 0.923 17 C -0.168 4.168 18 C -0.137 4.137 19 C -0.141 4.141 20 C -0.171 4.171 21 C 0.065 3.935 22 N -0.309 5.309 23 C -0.366 4.366 24 H 0.063 0.937 25 C -0.211 4.211 26 N -0.556 5.556 27 Si 0.751 3.249 28 H -0.220 1.220 29 H -0.223 1.223 30 H -0.215 1.215 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.064 0.936 34 H 0.161 0.839 35 H 0.195 0.805 36 H 0.192 0.808 37 H 0.202 0.798 38 H 0.248 0.752 39 H 0.061 0.939 40 H 0.085 0.915 41 H 0.060 0.940 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.061 0.939 46 H 0.081 0.919 47 H 0.079 0.921 48 H 0.078 0.922 49 H 0.057 0.943 50 H 0.023 0.977 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 9.658 5.447 8.060 13.708 hybrid contribution -1.409 -0.940 0.709 1.836 sum 8.249 4.507 8.769 12.855 Atomic orbital electron populations 1.21972 0.91945 1.02294 1.04119 1.21874 0.95717 0.97407 0.81929 0.86534 1.86332 1.80362 1.35824 1.18464 1.20293 0.93156 0.88146 0.87269 1.21359 1.06779 1.02852 0.91608 1.21872 0.92864 0.93560 0.97699 1.22415 1.03100 0.96435 1.00247 1.23054 0.92384 1.00244 0.87379 1.67239 1.22356 1.04763 1.34540 1.20458 0.79595 0.85076 0.85372 1.90623 1.43261 1.25106 1.87386 1.45566 1.55266 1.27661 1.04296 1.21508 0.97118 0.96128 0.84361 1.20783 0.84993 0.96206 0.91412 0.92304 1.21371 1.00512 0.98879 0.96063 1.20265 0.96448 0.99653 0.97350 1.20904 0.97202 0.97494 0.98499 1.21938 1.00624 0.97517 0.97037 1.20786 0.95435 0.87150 0.90169 1.43768 1.00103 1.22486 1.64586 1.18936 0.99763 0.88762 1.29095 0.93719 1.25106 1.00461 0.96132 0.99406 1.70084 1.23224 1.14821 1.47496 0.86021 0.81319 0.80661 0.76940 1.21970 1.22293 1.21545 0.90596 0.89839 0.93559 0.83861 0.80538 0.80770 0.79816 0.75210 0.93921 0.91518 0.93964 0.91027 0.92022 0.91987 0.93942 0.91936 0.92124 0.92191 0.94315 0.97651 0.94361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.47 9.49 71.98 0.68 -4.79 16 2 C 0.09 3.39 2.90 29.85 0.09 3.48 16 3 H 0.12 4.06 6.98 -2.38 -0.02 4.05 16 4 O -0.30 -11.49 9.30 -70.94 -0.66 -12.15 16 5 C 0.29 9.04 7.45 84.80 0.63 9.67 16 6 C -0.21 -4.98 10.04 22.47 0.23 -4.75 16 7 C -0.03 -0.55 10.17 22.44 0.23 -0.32 16 8 C -0.20 -2.90 10.10 22.36 0.23 -2.67 16 9 C 0.12 2.44 11.17 84.63 0.95 3.38 16 10 N -0.56 -16.06 8.65 -308.96 -2.67 -18.73 16 11 C 0.51 21.54 7.18 87.66 0.63 22.17 16 12 O -0.58 -28.32 16.51 15.95 0.26 -28.06 16 13 N -0.68 -27.13 4.68 -463.08 -2.17 -29.29 16 14 C 0.13 5.13 4.55 86.38 0.39 5.52 16 15 C 0.17 6.25 2.21 46.18 0.10 6.35 16 16 H 0.06 2.00 8.07 -2.39 -0.02 1.98 16 17 C -0.13 -4.01 5.09 29.59 0.15 -3.85 16 18 C -0.10 -2.76 5.16 28.61 0.15 -2.61 16 19 C -0.10 -3.21 5.51 29.76 0.16 -3.04 16 20 C -0.13 -4.33 5.71 30.22 0.17 -4.16 16 21 C 0.19 7.96 4.66 86.48 0.40 8.37 16 22 N -0.59 -24.92 1.76 -673.16 -1.19 -26.11 16 23 C -0.23 -11.53 7.62 84.03 0.64 -10.89 16 24 H 0.05 2.36 6.75 -2.91 -0.02 2.34 16 25 C -0.01 -0.71 4.86 84.86 0.41 -0.30 16 26 N -0.91 -47.09 11.13 21.65 0.24 -46.85 16 27 Si 0.92 44.11 29.58 68.60 2.03 46.14 16 28 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 29 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 30 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 31 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.08 3.41 7.92 -2.39 -0.02 3.39 16 33 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 35 H 0.18 1.41 8.06 -2.91 -0.02 1.39 16 36 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 37 H 0.18 2.41 8.06 -2.91 -0.02 2.39 16 38 H 0.41 16.71 7.86 -92.70 -0.73 15.98 16 39 H 0.04 1.88 6.84 -2.39 -0.02 1.86 16 40 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 41 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 42 H 0.07 1.93 8.11 -2.39 -0.02 1.91 16 43 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.06 1.57 7.35 -2.39 -0.02 1.55 16 45 H 0.04 1.59 7.48 -2.39 -0.02 1.58 16 46 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 48 H 0.06 1.79 7.31 -2.39 -0.02 1.77 16 49 H 0.04 1.89 6.46 -2.38 -0.02 1.87 16 50 H 0.01 0.25 8.02 -2.39 -0.02 0.23 16 51 H 0.25 12.82 8.31 -92.71 -0.77 12.05 16 Total: -1.00 -64.49 403.51 2.28 -62.21 By element: Atomic # 1 Polarization: 31.11 SS G_CDS: 0.19 Total: 31.30 kcal Atomic # 6 Polarization: 15.31 SS G_CDS: 6.24 Total: 21.55 kcal Atomic # 7 Polarization: -115.20 SS G_CDS: -5.78 Total: -120.98 kcal Atomic # 8 Polarization: -39.82 SS G_CDS: -0.40 Total: -40.21 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -64.49 2.28 -62.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506579060.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.569 kcal (2) G-P(sol) polarization free energy of solvation -64.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds