Wall clock time and date at job start Wed Apr 1 2020 05:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47597 * 2 1 4 4 O 1.42901 * 109.47139 * 120.00431 * 2 1 3 5 5 C 1.42896 * 114.00038 * 269.99229 * 4 2 1 6 6 C 1.50696 * 109.47387 * 180.02562 * 5 4 2 7 7 C 1.38650 * 120.78922 * 269.72529 * 6 5 4 8 8 C 1.38211 * 119.15904 * 179.75392 * 7 6 5 9 9 N 1.31870 * 120.76205 * 0.52865 * 8 7 6 10 10 C 1.31862 * 121.72863 * 359.74282 * 9 8 7 11 11 C 1.38203 * 120.76333 * 359.97438 * 10 9 8 12 12 C 1.50703 * 109.47069 * 240.00262 * 2 1 3 13 13 O 1.21277 * 120.00249 * 245.00597 * 12 2 1 14 14 N 1.34780 * 119.99803 * 64.99535 * 12 2 1 15 15 C 1.46507 * 119.99762 * 180.02562 * 14 12 2 16 16 C 1.52995 * 109.46814 * 174.61674 * 15 14 12 17 17 H 1.09000 * 109.59051 * 56.20518 * 16 15 14 18 18 C 1.53192 * 109.70371 * 176.56126 * 16 15 14 19 19 C 1.53042 * 109.31429 * 174.49483 * 18 16 15 20 20 C 1.53036 * 109.53723 * 298.63105 * 19 18 16 21 21 C 1.52765 * 109.38206 * 61.24177 * 20 19 18 22 22 N 1.46926 * 109.00872 * 305.58606 * 21 20 19 23 23 C 1.36932 * 120.63284 * 233.58480 * 22 21 20 24 24 H 1.08008 * 119.99831 * 219.14868 * 23 22 21 25 25 C 1.38809 * 119.99980 * 39.14847 * 23 22 21 26 26 N 1.31621 * 120.00047 * 10.53640 * 25 23 22 27 27 Si 1.86810 * 119.99847 * 190.54075 * 25 23 22 28 28 H 1.48502 * 109.46670 * 179.97438 * 27 25 23 29 29 H 1.48497 * 109.46634 * 299.99706 * 27 25 23 30 30 H 1.48501 * 109.47114 * 59.99676 * 27 25 23 31 31 H 1.09003 * 109.47221 * 299.99689 * 1 2 3 32 32 H 1.09001 * 109.47209 * 59.99609 * 1 2 3 33 33 H 1.09003 * 109.47597 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47618 * 300.00575 * 5 4 2 35 35 H 1.09005 * 109.46497 * 60.00161 * 5 4 2 36 36 H 1.07998 * 120.42294 * 359.97438 * 7 6 5 37 37 H 1.08002 * 119.61402 * 180.29818 * 8 7 6 38 38 H 1.08004 * 119.62185 * 179.97438 * 10 9 8 39 39 H 1.08003 * 120.41918 * 179.97438 * 11 10 9 40 40 H 0.97000 * 119.99776 * 0.02562 * 14 12 2 41 41 H 1.09000 * 109.46781 * 54.61830 * 15 14 12 42 42 H 1.08993 * 109.47199 * 294.61929 * 15 14 12 43 43 H 1.09009 * 109.49575 * 294.43962 * 18 16 15 44 44 H 1.08996 * 109.50027 * 54.50698 * 18 16 15 45 45 H 1.08994 * 109.45904 * 58.65397 * 19 18 16 46 46 H 1.09001 * 109.46257 * 178.62787 * 19 18 16 47 47 H 1.09000 * 109.50016 * 181.31593 * 20 19 18 48 48 H 1.08995 * 109.50167 * 301.41753 * 20 19 18 49 49 H 1.09004 * 109.50948 * 185.70420 * 21 20 19 50 50 H 1.09003 * 109.43290 * 65.42578 * 21 20 19 51 51 H 0.97000 * 119.99632 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2002 0.1827 2.2940 6 6 2.7015 -0.6284 3.4609 7 6 1.8150 -1.2045 4.3579 8 6 2.3115 -1.9461 5.4133 9 7 3.6109 -2.0993 5.5775 10 6 4.4831 -1.5614 4.7476 11 6 4.0604 -0.8117 3.6663 12 6 2.0323 -0.7104 -1.2305 13 8 2.6528 -1.7467 -1.1217 14 7 1.7917 -0.1941 -2.4521 15 6 2.2796 -0.8850 -3.6483 16 6 1.7617 -0.1692 -4.8974 17 1 2.0621 0.8782 -4.8694 18 6 2.3379 -0.8354 -6.1508 19 6 1.7092 -0.2032 -7.3946 20 6 0.1964 -0.4342 -7.3770 21 6 -0.4038 0.2314 -6.1400 22 7 0.2959 -0.2600 -4.9451 23 6 -0.4042 -0.7976 -3.8983 24 1 -0.1028 -0.5877 -2.8826 25 6 -1.5012 -1.6123 -4.1425 26 7 -1.7464 -2.0373 -5.3638 27 14 -2.6295 -2.1054 -2.7377 28 1 -3.7182 -2.9710 -3.2579 29 1 -1.8508 -2.8491 -1.7152 30 1 -3.2167 -0.8874 -2.1236 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 2.9321 0.9512 2.0450 35 1 1.2539 0.6545 2.5588 36 1 0.7499 -1.0785 4.2314 37 1 1.6274 -2.4021 6.1136 38 1 5.5399 -1.7084 4.9147 39 1 4.7796 -0.3733 2.9902 40 1 1.2956 0.6349 -2.5391 41 1 1.9215 -1.9144 -3.6447 42 1 3.3695 -0.8794 -3.6520 43 1 3.4181 -0.6907 -6.1757 44 1 2.1141 -1.9019 -6.1315 45 1 1.9130 0.8676 -7.4001 46 1 2.1355 -0.6586 -8.2884 47 1 -0.2478 -0.0041 -8.2747 48 1 -0.0078 -1.5044 -7.3464 49 1 -1.4630 -0.0165 -6.0710 50 1 -0.2835 1.3122 -6.2153 51 1 -2.5132 -2.6064 -5.5344 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566927928.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:32 Heat of formation + Delta-G solvation = -24.381073 kcal Electronic energy + Delta-G solvation = -31223.651076 eV Core-core repulsion = 27123.747054 eV Total energy + Delta-G solvation = -4099.904023 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.40106 -39.64294 -38.05663 -37.24697 -34.24621 -33.60011 -32.94643 -31.56452 -31.41933 -30.25530 -29.87493 -27.05286 -26.10392 -24.97600 -23.68653 -23.36262 -22.18966 -22.11072 -20.71268 -19.98747 -18.95155 -17.64004 -17.18388 -16.71177 -16.62300 -16.06898 -15.76980 -15.49801 -15.21957 -14.95457 -14.31130 -14.12511 -14.00625 -13.97017 -13.80491 -13.62954 -13.33806 -13.06649 -12.90153 -12.73381 -12.37499 -12.14178 -12.07412 -11.93944 -11.75081 -11.45438 -11.27877 -11.15788 -11.07384 -10.82567 -10.35420 -10.24816 -10.20486 -10.03394 -9.90654 -9.82999 -9.70470 -9.57204 -9.35435 -9.34618 -9.11588 -8.49350 -8.23010 -6.50338 -5.81992 -3.40026 0.92193 0.93482 3.02376 3.14969 3.32090 3.38008 3.41014 3.65314 4.06078 4.25734 4.43245 4.46409 4.54255 4.81951 4.87341 4.90648 5.04952 5.07685 5.11961 5.19595 5.28020 5.36723 5.40076 5.54512 5.56710 5.72730 5.73478 5.75348 5.77979 5.79614 6.08676 6.09172 6.11559 6.21883 6.28357 6.39151 6.45477 6.46847 6.58800 6.73178 6.80228 6.87521 6.91795 6.98285 7.02557 7.14705 7.51331 7.66740 7.74455 7.80199 8.04703 8.49020 8.72587 9.18594 9.76769 10.40402 11.22960 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015525 B = 0.002641 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.100825 B =10598.120569 C =11802.937604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.073 3.927 3 H 0.083 0.917 4 O -0.348 6.348 5 C 0.097 3.903 6 C -0.041 4.041 7 C -0.151 4.151 8 C 0.094 3.906 9 N -0.484 5.484 10 C 0.095 3.905 11 C -0.149 4.149 12 C 0.510 3.490 13 O -0.532 6.532 14 N -0.699 5.699 15 C 0.137 3.863 16 C 0.159 3.841 17 H 0.030 0.970 18 C -0.127 4.127 19 C -0.107 4.107 20 C -0.128 4.128 21 C 0.166 3.834 22 N -0.583 5.583 23 C -0.268 4.268 24 H 0.078 0.922 25 C 0.017 3.983 26 N -0.891 5.891 27 Si 0.887 3.113 28 H -0.291 1.291 29 H -0.280 1.280 30 H -0.282 1.282 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.137 0.863 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.137 0.863 40 H 0.404 0.596 41 H 0.079 0.921 42 H 0.052 0.948 43 H 0.044 0.956 44 H 0.064 0.936 45 H 0.046 0.954 46 H 0.042 0.958 47 H 0.036 0.964 48 H 0.075 0.925 49 H 0.086 0.914 50 H -0.004 1.004 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.390 8.632 11.879 16.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.012 3.988 3 H 0.101 0.899 4 O -0.266 6.266 5 C 0.020 3.980 6 C -0.049 4.049 7 C -0.171 4.171 8 C -0.062 4.062 9 N -0.194 5.194 10 C -0.062 4.062 11 C -0.169 4.169 12 C 0.294 3.706 13 O -0.409 6.409 14 N -0.351 5.351 15 C 0.014 3.986 16 C 0.052 3.948 17 H 0.048 0.952 18 C -0.167 4.167 19 C -0.145 4.145 20 C -0.167 4.167 21 C 0.041 3.959 22 N -0.307 5.307 23 C -0.398 4.398 24 H 0.095 0.905 25 C -0.184 4.184 26 N -0.533 5.533 27 Si 0.717 3.283 28 H -0.217 1.217 29 H -0.206 1.206 30 H -0.208 1.208 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.155 0.845 37 H 0.174 0.826 38 H 0.174 0.826 39 H 0.154 0.846 40 H 0.239 0.761 41 H 0.097 0.903 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.082 0.918 45 H 0.065 0.935 46 H 0.061 0.939 47 H 0.055 0.945 48 H 0.094 0.906 49 H 0.104 0.896 50 H 0.014 0.986 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.036 7.077 12.600 16.536 hybrid contribution -1.376 0.622 -0.332 1.546 sum 6.661 7.699 12.269 15.942 Atomic orbital electron populations 1.22285 0.93219 1.04407 1.03301 1.21948 0.95371 0.95948 0.85517 0.89910 1.88138 1.86629 1.33406 1.18458 1.21399 1.00012 0.91677 0.84881 1.19997 0.93669 0.96603 0.94666 1.22109 1.01106 0.98168 0.95717 1.22766 0.91957 0.95368 0.96139 1.67655 1.03401 1.19627 1.28678 1.22764 0.99678 0.93192 0.90565 1.22107 0.95889 0.99915 0.99024 1.20107 0.80437 0.85794 0.84295 1.90688 1.40496 1.23145 1.86530 1.45922 1.56438 1.27594 1.05114 1.21355 0.96064 0.98259 0.82930 1.20889 0.87024 0.95428 0.91463 0.95244 1.21943 0.97488 1.01132 0.96160 1.21386 0.97499 0.99087 0.96552 1.21827 0.93524 1.03205 0.98156 1.20660 0.98820 0.91547 0.84846 1.44144 0.98206 1.70759 1.17629 1.19407 1.09386 1.23494 0.87528 0.90521 1.25352 1.00871 0.96291 0.95847 1.69935 1.28803 1.35511 1.19039 0.86623 0.80710 0.78429 0.82547 1.21667 1.20555 1.20791 0.91699 0.89811 0.90897 0.91873 0.91747 0.84549 0.82592 0.82578 0.84557 0.76077 0.90280 0.93005 0.93735 0.91771 0.93548 0.93930 0.94504 0.90602 0.89577 0.98632 0.93670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 9.48 37.15 0.35 -2.03 16 2 C 0.07 1.03 3.13 -27.88 -0.09 0.94 16 3 H 0.08 0.87 7.79 -51.93 -0.40 0.47 16 4 O -0.35 -5.24 9.51 -55.09 -0.52 -5.76 16 5 C 0.10 1.02 5.92 36.00 0.21 1.24 16 6 C -0.04 -0.46 5.55 -104.32 -0.58 -1.03 16 7 C -0.15 -1.55 9.82 -39.44 -0.39 -1.94 16 8 C 0.09 0.97 11.18 -17.54 -0.20 0.78 16 9 N -0.48 -5.69 10.36 -13.25 -0.14 -5.83 16 10 C 0.09 0.98 11.18 -17.55 -0.20 0.78 16 11 C -0.15 -1.55 9.82 -39.44 -0.39 -1.94 16 12 C 0.51 9.25 7.15 -10.98 -0.08 9.17 16 13 O -0.53 -11.99 16.50 -14.30 -0.24 -12.23 16 14 N -0.70 -12.06 3.28 -60.29 -0.20 -12.26 16 15 C 0.14 2.59 4.55 -4.04 -0.02 2.57 16 16 C 0.16 3.00 2.96 -67.60 -0.20 2.80 16 17 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 18 C -0.13 -2.29 5.38 -26.61 -0.14 -2.43 16 19 C -0.11 -1.87 5.89 -26.69 -0.16 -2.03 16 20 C -0.13 -2.57 6.05 -26.83 -0.16 -2.74 16 21 C 0.17 3.66 5.59 -3.93 -0.02 3.64 16 22 N -0.58 -12.96 2.94 -165.03 -0.48 -13.45 16 23 C -0.27 -6.50 7.86 -15.06 -0.12 -6.62 16 24 H 0.08 1.75 4.51 -52.48 -0.24 1.52 16 25 C 0.02 0.44 5.04 -17.43 -0.09 0.35 16 26 N -0.89 -24.21 11.11 55.49 0.62 -23.59 16 27 Si 0.89 20.80 29.57 -169.99 -5.03 15.78 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 29 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 30 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 31 H 0.06 0.69 7.87 -51.93 -0.41 0.28 16 32 H 0.08 1.14 7.52 -51.93 -0.39 0.75 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.06 0.55 8.05 -51.93 -0.42 0.13 16 35 H 0.06 0.55 7.83 -51.93 -0.41 0.15 16 36 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.16 1.18 8.06 -52.48 -0.42 0.75 16 39 H 0.14 1.18 8.06 -52.48 -0.42 0.75 16 40 H 0.40 6.31 7.44 -40.82 -0.30 6.01 16 41 H 0.08 1.80 7.77 -51.93 -0.40 1.39 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 44 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.08 1.76 7.89 -51.93 -0.41 1.35 16 49 H 0.09 2.15 6.04 -51.93 -0.31 1.84 16 50 H 0.00 -0.09 8.14 -51.93 -0.42 -0.51 16 51 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 407.63 15.07 6.14 6.14 Total: -1.00 -31.94 407.63 -10.43 -42.37 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -8.33 Total: 7.30 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -2.26 Total: 1.53 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: -0.20 Total: -55.13 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: -0.76 Total: -17.99 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.78 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.94 -10.43 -42.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566927928.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.984 kcal (2) G-P(sol) polarization free energy of solvation -31.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds