Wall clock time and date at job start Wed Apr 1 2020 05:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47597 * 2 1 4 4 O 1.42901 * 109.47139 * 120.00431 * 2 1 3 5 5 C 1.42896 * 114.00038 * 269.99229 * 4 2 1 6 6 C 1.50696 * 109.47387 * 180.02562 * 5 4 2 7 7 C 1.38650 * 120.78922 * 269.72529 * 6 5 4 8 8 C 1.38211 * 119.15904 * 179.75392 * 7 6 5 9 9 N 1.31870 * 120.76205 * 0.52865 * 8 7 6 10 10 C 1.31862 * 121.72863 * 359.74282 * 9 8 7 11 11 C 1.38203 * 120.76333 * 359.97438 * 10 9 8 12 12 C 1.50703 * 109.47069 * 240.00262 * 2 1 3 13 13 O 1.21277 * 120.00249 * 245.00597 * 12 2 1 14 14 N 1.34780 * 119.99803 * 64.99535 * 12 2 1 15 15 C 1.46507 * 119.99762 * 180.02562 * 14 12 2 16 16 C 1.52995 * 109.46814 * 174.61674 * 15 14 12 17 17 H 1.09000 * 109.59051 * 56.20518 * 16 15 14 18 18 C 1.53192 * 109.70371 * 176.56126 * 16 15 14 19 19 C 1.53042 * 109.31429 * 174.49483 * 18 16 15 20 20 C 1.53036 * 109.53723 * 298.63105 * 19 18 16 21 21 C 1.52765 * 109.38206 * 61.24177 * 20 19 18 22 22 N 1.46926 * 109.00872 * 305.58606 * 21 20 19 23 23 C 1.36932 * 120.63284 * 233.58480 * 22 21 20 24 24 H 1.08008 * 119.99831 * 219.14868 * 23 22 21 25 25 C 1.38809 * 119.99980 * 39.14847 * 23 22 21 26 26 N 1.31621 * 120.00047 * 10.53640 * 25 23 22 27 27 Si 1.86810 * 119.99847 * 190.54075 * 25 23 22 28 28 H 1.48502 * 109.46670 * 179.97438 * 27 25 23 29 29 H 1.48497 * 109.46634 * 299.99706 * 27 25 23 30 30 H 1.48501 * 109.47114 * 59.99676 * 27 25 23 31 31 H 1.09003 * 109.47221 * 299.99689 * 1 2 3 32 32 H 1.09001 * 109.47209 * 59.99609 * 1 2 3 33 33 H 1.09003 * 109.47597 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47618 * 300.00575 * 5 4 2 35 35 H 1.09005 * 109.46497 * 60.00161 * 5 4 2 36 36 H 1.07998 * 120.42294 * 359.97438 * 7 6 5 37 37 H 1.08002 * 119.61402 * 180.29818 * 8 7 6 38 38 H 1.08004 * 119.62185 * 179.97438 * 10 9 8 39 39 H 1.08003 * 120.41918 * 179.97438 * 11 10 9 40 40 H 0.97000 * 119.99776 * 0.02562 * 14 12 2 41 41 H 1.09000 * 109.46781 * 54.61830 * 15 14 12 42 42 H 1.08993 * 109.47199 * 294.61929 * 15 14 12 43 43 H 1.09009 * 109.49575 * 294.43962 * 18 16 15 44 44 H 1.08996 * 109.50027 * 54.50698 * 18 16 15 45 45 H 1.08994 * 109.45904 * 58.65397 * 19 18 16 46 46 H 1.09001 * 109.46257 * 178.62787 * 19 18 16 47 47 H 1.09000 * 109.50016 * 181.31593 * 20 19 18 48 48 H 1.08995 * 109.50167 * 301.41753 * 20 19 18 49 49 H 1.09004 * 109.50948 * 185.70420 * 21 20 19 50 50 H 1.09003 * 109.43290 * 65.42578 * 21 20 19 51 51 H 0.97000 * 119.99632 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2002 0.1827 2.2940 6 6 2.7015 -0.6284 3.4609 7 6 1.8150 -1.2045 4.3579 8 6 2.3115 -1.9461 5.4133 9 7 3.6109 -2.0993 5.5775 10 6 4.4831 -1.5614 4.7476 11 6 4.0604 -0.8117 3.6663 12 6 2.0323 -0.7104 -1.2305 13 8 2.6528 -1.7467 -1.1217 14 7 1.7917 -0.1941 -2.4521 15 6 2.2796 -0.8850 -3.6483 16 6 1.7617 -0.1692 -4.8974 17 1 2.0621 0.8782 -4.8694 18 6 2.3379 -0.8354 -6.1508 19 6 1.7092 -0.2032 -7.3946 20 6 0.1964 -0.4342 -7.3770 21 6 -0.4038 0.2314 -6.1400 22 7 0.2959 -0.2600 -4.9451 23 6 -0.4042 -0.7976 -3.8983 24 1 -0.1028 -0.5877 -2.8826 25 6 -1.5012 -1.6123 -4.1425 26 7 -1.7464 -2.0373 -5.3638 27 14 -2.6295 -2.1054 -2.7377 28 1 -3.7182 -2.9710 -3.2579 29 1 -1.8508 -2.8491 -1.7152 30 1 -3.2167 -0.8874 -2.1236 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 2.9321 0.9512 2.0450 35 1 1.2539 0.6545 2.5588 36 1 0.7499 -1.0785 4.2314 37 1 1.6274 -2.4021 6.1136 38 1 5.5399 -1.7084 4.9147 39 1 4.7796 -0.3733 2.9902 40 1 1.2956 0.6349 -2.5391 41 1 1.9215 -1.9144 -3.6447 42 1 3.3695 -0.8794 -3.6520 43 1 3.4181 -0.6907 -6.1757 44 1 2.1141 -1.9019 -6.1315 45 1 1.9130 0.8676 -7.4001 46 1 2.1355 -0.6586 -8.2884 47 1 -0.2478 -0.0041 -8.2747 48 1 -0.0078 -1.5044 -7.3464 49 1 -1.4630 -0.0165 -6.0710 50 1 -0.2835 1.3122 -6.2153 51 1 -2.5132 -2.6064 -5.5344 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566927928.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:31 Heat of formation + Delta-G solvation = -43.157763 kcal Electronic energy + Delta-G solvation = -31224.465295 eV Core-core repulsion = 27123.747054 eV Total energy + Delta-G solvation = -4100.718241 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.25734 -40.92733 -39.45904 -38.54160 -35.78041 -34.75347 -34.46149 -32.84120 -32.16014 -31.83984 -31.40490 -27.87842 -27.71322 -26.58914 -24.67836 -24.41863 -23.77780 -22.96971 -22.27143 -21.39127 -20.54966 -18.99423 -18.25251 -17.93157 -17.49802 -17.29747 -17.10807 -16.62898 -16.49154 -16.19565 -15.93603 -15.60249 -15.34636 -15.04054 -14.86181 -14.77049 -14.61371 -14.54707 -14.20298 -13.87790 -13.69263 -13.53098 -13.36520 -13.22817 -13.01893 -12.91112 -12.79392 -12.57795 -12.50476 -12.31236 -12.18131 -11.98341 -11.77117 -11.46107 -11.17821 -11.03815 -10.99399 -10.75797 -10.48919 -10.47559 -10.36010 -10.10189 -9.78858 -8.34730 -7.76247 -5.34078 0.12658 0.18500 1.41582 1.47012 1.47599 1.65074 2.00795 2.51955 2.73574 3.11312 3.38885 3.56607 3.61921 3.68277 3.76256 3.81327 3.95692 4.04266 4.06673 4.11292 4.19137 4.29929 4.33826 4.39459 4.43240 4.53593 4.60797 4.66102 4.68523 4.70629 4.76505 4.86225 4.87265 4.96856 4.97695 5.04254 5.18518 5.19171 5.25122 5.34121 5.34191 5.42163 5.50223 5.60859 5.74025 5.76048 5.84490 5.99255 6.03406 6.57389 6.67920 6.98177 7.28952 7.33993 7.93334 8.51519 9.25486 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015525 B = 0.002641 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.100825 B =10598.120569 C =11802.937604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.082 3.918 3 H 0.129 0.871 4 O -0.381 6.381 5 C 0.093 3.907 6 C -0.060 4.060 7 C -0.158 4.158 8 C 0.083 3.917 9 N -0.510 5.510 10 C 0.084 3.916 11 C -0.158 4.158 12 C 0.502 3.498 13 O -0.584 6.584 14 N -0.691 5.691 15 C 0.144 3.856 16 C 0.160 3.840 17 H 0.060 0.940 18 C -0.125 4.125 19 C -0.101 4.101 20 C -0.122 4.122 21 C 0.166 3.834 22 N -0.597 5.597 23 C -0.252 4.252 24 H 0.091 0.909 25 C -0.038 4.038 26 N -0.920 5.920 27 Si 0.932 3.068 28 H -0.304 1.304 29 H -0.293 1.293 30 H -0.262 1.262 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.036 0.964 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.153 0.847 37 H 0.178 0.822 38 H 0.178 0.822 39 H 0.151 0.849 40 H 0.414 0.586 41 H 0.031 0.969 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.030 0.970 45 H 0.070 0.930 46 H 0.060 0.940 47 H 0.052 0.948 48 H 0.034 0.966 49 H 0.050 0.950 50 H 0.017 0.983 51 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.589 11.652 12.612 19.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.021 3.979 3 H 0.146 0.854 4 O -0.300 6.300 5 C 0.017 3.983 6 C -0.068 4.068 7 C -0.177 4.177 8 C -0.073 4.073 9 N -0.220 5.220 10 C -0.072 4.072 11 C -0.177 4.177 12 C 0.288 3.712 13 O -0.464 6.464 14 N -0.343 5.343 15 C 0.020 3.980 16 C 0.054 3.946 17 H 0.078 0.922 18 C -0.165 4.165 19 C -0.138 4.138 20 C -0.161 4.161 21 C 0.041 3.959 22 N -0.321 5.321 23 C -0.383 4.383 24 H 0.108 0.892 25 C -0.235 4.235 26 N -0.565 5.565 27 Si 0.762 3.238 28 H -0.231 1.231 29 H -0.220 1.220 30 H -0.187 1.187 31 H 0.119 0.881 32 H 0.102 0.898 33 H 0.056 0.944 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.171 0.829 37 H 0.195 0.805 38 H 0.195 0.805 39 H 0.169 0.831 40 H 0.252 0.748 41 H 0.050 0.950 42 H 0.089 0.911 43 H 0.097 0.903 44 H 0.048 0.952 45 H 0.088 0.912 46 H 0.079 0.921 47 H 0.071 0.929 48 H 0.053 0.947 49 H 0.069 0.931 50 H 0.035 0.965 51 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 9.232 10.154 13.345 19.142 hybrid contribution -1.664 -0.305 -0.529 1.772 sum 7.568 9.849 12.816 17.847 Atomic orbital electron populations 1.22287 0.92914 1.02609 1.05118 1.21922 0.95291 0.97182 0.83456 0.85360 1.88101 1.86833 1.35512 1.19588 1.21653 1.01921 0.91425 0.83259 1.20277 0.94152 0.97174 0.95187 1.22364 1.02013 0.97842 0.95517 1.23188 0.91997 0.95392 0.96714 1.67685 1.04232 1.20488 1.29563 1.23176 1.00679 0.92942 0.90436 1.22354 0.96238 0.99903 0.99254 1.21005 0.79323 0.85248 0.85595 1.90660 1.42903 1.25528 1.87334 1.45869 1.56119 1.27658 1.04696 1.21180 0.97052 0.95855 0.83901 1.21040 0.84836 0.96938 0.91812 0.92215 1.21912 0.99616 0.98958 0.96020 1.21345 0.94962 1.00614 0.96894 1.21698 0.96015 1.00381 0.98044 1.20591 0.97048 0.92683 0.85577 1.44342 0.99830 1.70668 1.17305 1.19796 1.08390 1.21316 0.88791 0.89224 1.25919 1.02880 0.97594 0.97090 1.70090 1.29049 1.37041 1.20313 0.85908 0.79094 0.78380 0.80449 1.23124 1.21989 1.18721 0.88079 0.89802 0.94428 0.89710 0.89389 0.82898 0.80497 0.80493 0.83138 0.74823 0.95021 0.91131 0.90340 0.95150 0.91164 0.92140 0.92893 0.94724 0.93135 0.96515 0.94906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.26 9.48 71.98 0.68 -3.58 16 2 C 0.08 2.10 3.13 29.85 0.09 2.19 16 3 H 0.13 2.10 7.79 -2.39 -0.02 2.08 16 4 O -0.38 -10.73 9.51 -129.99 -1.24 -11.97 16 5 C 0.09 1.69 5.92 71.23 0.42 2.11 16 6 C -0.06 -1.22 5.55 -19.67 -0.11 -1.33 16 7 C -0.16 -3.01 9.82 22.36 0.22 -2.79 16 8 C 0.08 1.64 11.18 84.68 0.95 2.59 16 9 N -0.51 -11.63 10.36 -195.84 -2.03 -13.66 16 10 C 0.08 1.66 11.18 84.68 0.95 2.61 16 11 C -0.16 -3.07 9.82 22.36 0.22 -2.85 16 12 C 0.50 17.72 7.15 87.66 0.63 18.35 16 13 O -0.58 -26.63 16.50 15.97 0.26 -26.36 16 14 N -0.69 -22.79 3.28 -463.06 -1.52 -24.31 16 15 C 0.14 5.33 4.55 86.38 0.39 5.72 16 16 C 0.16 5.70 2.96 44.97 0.13 5.84 16 17 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 18 C -0.13 -4.25 5.38 30.67 0.16 -4.09 16 19 C -0.10 -3.21 5.89 30.62 0.18 -3.03 16 20 C -0.12 -4.83 6.05 30.53 0.18 -4.64 16 21 C 0.17 7.20 5.59 86.22 0.48 7.68 16 22 N -0.60 -26.08 2.94 -676.03 -1.99 -28.07 16 23 C -0.25 -12.23 7.86 84.03 0.66 -11.57 16 24 H 0.09 4.05 4.51 -2.91 -0.01 4.03 16 25 C -0.04 -2.02 5.04 84.86 0.43 -1.59 16 26 N -0.92 -52.09 11.11 21.65 0.24 -51.85 16 27 Si 0.93 43.83 29.57 68.60 2.03 45.86 16 28 H -0.30 -14.88 7.11 99.48 0.71 -14.18 16 29 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 30 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 31 H 0.10 1.76 7.87 -2.39 -0.02 1.74 16 32 H 0.08 2.06 7.52 -2.39 -0.02 2.04 16 33 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.08 1.15 8.05 -2.39 -0.02 1.13 16 35 H 0.09 1.16 7.83 -2.38 -0.02 1.14 16 36 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 37 H 0.18 2.46 8.06 -2.91 -0.02 2.43 16 38 H 0.18 2.48 8.06 -2.91 -0.02 2.45 16 39 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 40 H 0.41 11.83 7.44 -92.71 -0.69 11.14 16 41 H 0.03 1.47 7.77 -2.39 -0.02 1.46 16 42 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 44 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 47 H 0.05 1.87 8.14 -2.39 -0.02 1.86 16 48 H 0.03 1.64 7.89 -2.39 -0.02 1.62 16 49 H 0.05 2.57 6.04 -2.38 -0.01 2.55 16 50 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 51 H 0.24 13.73 8.31 -92.71 -0.77 12.96 16 Total: -1.00 -73.61 407.63 2.67 -70.94 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: 0.23 Total: 27.82 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: 6.67 Total: 11.60 kcal Atomic # 7 Polarization: -112.60 SS G_CDS: -5.29 Total: -117.89 kcal Atomic # 8 Polarization: -37.36 SS G_CDS: -0.97 Total: -38.33 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -73.61 2.67 -70.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566927928.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.784 kcal (2) G-P(sol) polarization free energy of solvation -73.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds