Wall clock time and date at job start Wed Apr 1 2020 05:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47314 * 2 1 4 4 O 1.42901 * 109.47071 * 239.99626 * 2 1 3 5 5 C 1.42909 * 113.99624 * 90.00556 * 4 2 1 6 6 C 1.50694 * 109.47016 * 180.02562 * 5 4 2 7 7 C 1.38653 * 120.78799 * 269.71574 * 6 5 4 8 8 C 1.38211 * 119.16332 * 179.75295 * 7 6 5 9 9 N 1.31869 * 120.75880 * 0.53707 * 8 7 6 10 10 C 1.31866 * 121.72785 * 359.73392 * 9 8 7 11 11 C 1.38196 * 120.76833 * 359.97438 * 10 9 8 12 12 C 1.50697 * 109.46860 * 120.00042 * 2 1 3 13 13 O 1.21287 * 119.99987 * 120.00277 * 12 2 1 14 14 N 1.34777 * 120.00283 * 300.00015 * 12 2 1 15 15 C 1.46499 * 120.00068 * 180.02562 * 14 12 2 16 16 C 1.53001 * 109.46974 * 179.97438 * 15 14 12 17 17 H 1.08994 * 109.58506 * 59.75166 * 16 15 14 18 18 C 1.53189 * 109.58727 * 180.02562 * 16 15 14 19 19 C 1.53040 * 109.31446 * 174.56683 * 18 16 15 20 20 C 1.53044 * 109.53920 * 298.63355 * 19 18 16 21 21 C 1.53186 * 109.31213 * 61.36166 * 20 19 18 22 22 N 1.46929 * 109.58768 * 299.47043 * 16 15 14 23 23 C 1.36937 * 120.62856 * 6.46261 * 22 16 15 24 24 H 1.08000 * 120.00267 * 328.75701 * 23 22 16 25 25 C 1.38811 * 119.99805 * 148.76576 * 23 22 16 26 26 N 1.31615 * 120.00215 * 348.13439 * 25 23 22 27 27 Si 1.86808 * 119.99936 * 168.13724 * 25 23 22 28 28 H 1.48501 * 109.47110 * 359.97438 * 27 25 23 29 29 H 1.48497 * 109.46829 * 119.99718 * 27 25 23 30 30 H 1.48494 * 109.46836 * 239.99712 * 27 25 23 31 31 H 1.09004 * 109.46879 * 59.99910 * 1 2 3 32 32 H 1.08997 * 109.47068 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47183 * 299.99959 * 1 2 3 34 34 H 1.08997 * 109.46747 * 299.99650 * 5 4 2 35 35 H 1.08998 * 109.47174 * 59.99870 * 5 4 2 36 36 H 1.07997 * 120.42155 * 0.02562 * 7 6 5 37 37 H 1.07993 * 119.61933 * 180.29188 * 8 7 6 38 38 H 1.08002 * 119.61612 * 180.02562 * 10 9 8 39 39 H 1.08000 * 120.42252 * 179.97438 * 11 10 9 40 40 H 0.97000 * 119.99823 * 359.97438 * 14 12 2 41 41 H 1.09006 * 109.47362 * 60.00455 * 15 14 12 42 42 H 1.08994 * 109.47248 * 299.99757 * 15 14 12 43 43 H 1.09007 * 109.49522 * 294.51543 * 18 16 15 44 44 H 1.08997 * 109.50373 * 54.58101 * 18 16 15 45 45 H 1.09011 * 109.46199 * 58.64906 * 19 18 16 46 46 H 1.08998 * 109.46477 * 178.62216 * 19 18 16 47 47 H 1.08996 * 109.49779 * 181.31618 * 20 19 18 48 48 H 1.08998 * 109.49301 * 301.41532 * 20 19 18 49 49 H 1.09004 * 109.58945 * 65.15470 * 21 20 19 50 50 H 1.09001 * 109.59204 * 185.43854 * 21 20 19 51 51 H 0.97005 * 120.00242 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.2001 0.1829 -2.2941 6 6 2.7003 -0.6284 -3.4613 7 6 4.0591 -0.8076 -3.6708 8 6 4.4806 -1.5624 -4.7492 9 7 3.6075 -2.0996 -5.5788 10 6 2.3083 -1.9455 -5.4136 11 6 1.8128 -1.2088 -4.3546 12 6 2.0322 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7066 -0.2500 2.4546 15 6 2.1954 -0.9403 3.6507 16 6 1.6858 -0.2188 4.9000 17 1 0.5958 -0.2139 4.9000 18 6 2.1959 -0.9382 6.1525 19 6 1.7974 -0.1369 7.3941 20 6 2.4425 1.2498 7.3371 21 6 1.9352 1.9939 6.0980 22 7 2.1845 1.1632 4.9085 23 6 2.8690 1.6645 3.8336 24 1 3.4775 1.0096 3.2276 25 6 2.7807 3.0146 3.5229 26 7 1.8698 3.7656 4.1046 27 14 3.9549 3.7654 2.2790 28 1 4.8773 2.7171 1.7735 29 1 3.1799 4.3317 1.1460 30 1 4.7413 4.8443 2.9292 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.2539 0.6546 -2.5588 35 1 2.9320 0.9513 -2.0450 36 1 4.7791 -0.3667 -2.9973 37 1 5.5371 -1.7107 -4.9166 38 1 1.6236 -2.4010 -6.1137 39 1 0.7476 -1.0859 -4.2249 40 1 1.1493 0.5389 2.5436 41 1 3.2854 -0.9399 3.6507 42 1 1.8324 -1.9681 3.6509 43 1 1.7551 -1.9338 6.2052 44 1 3.2816 -1.0230 6.1067 45 1 0.7128 -0.0318 7.4258 46 1 2.1379 -0.6592 8.2881 47 1 2.1772 1.8114 8.2328 48 1 3.5259 1.1449 7.2803 49 1 0.8655 2.1795 6.1955 50 1 2.4631 2.9425 5.9997 51 1 1.8079 4.7089 3.8872 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566927929.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:36 Heat of formation + Delta-G solvation = -28.572645 kcal Electronic energy + Delta-G solvation = -31237.275025 eV Core-core repulsion = 27137.189242 eV Total energy + Delta-G solvation = -4100.085783 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.34878 -39.55446 -38.08636 -37.22570 -34.18511 -33.55107 -33.12249 -31.59889 -31.37522 -30.24030 -29.90125 -26.98814 -26.16023 -25.00043 -23.64681 -23.46408 -22.19043 -22.11785 -20.76183 -19.81579 -19.12807 -17.49763 -17.12182 -16.64338 -16.50596 -16.10831 -15.73458 -15.66955 -15.19905 -14.90318 -14.34681 -14.11733 -13.95690 -13.87893 -13.80102 -13.63594 -13.44343 -13.07016 -12.94100 -12.65711 -12.48754 -12.33113 -12.07982 -12.02721 -11.77041 -11.64511 -11.22645 -11.19601 -11.01172 -10.85632 -10.59730 -10.33138 -10.18844 -10.04482 -9.97554 -9.83874 -9.66457 -9.57410 -9.46869 -9.31012 -9.05480 -8.65891 -8.26561 -6.72048 -5.91237 -3.38427 0.96860 0.98227 3.14048 3.18454 3.21955 3.33158 3.36052 3.70804 4.13308 4.29492 4.34489 4.52901 4.63980 4.89331 4.94546 4.99014 5.08919 5.16617 5.19455 5.22995 5.25722 5.31038 5.45223 5.47275 5.60400 5.61760 5.64769 5.67230 5.74268 5.79532 5.93573 6.01807 6.11428 6.12548 6.16724 6.27335 6.33006 6.38238 6.51362 6.56384 6.66989 6.69761 6.81985 6.93911 7.00552 7.16282 7.33931 7.61292 7.71741 7.78227 8.21173 8.33802 8.82660 9.08990 9.70285 10.29334 11.15474 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014635 B = 0.002737 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.739056 B =10229.411588 C =11196.290108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.069 3.931 3 H 0.090 0.910 4 O -0.349 6.349 5 C 0.095 3.905 6 C -0.039 4.039 7 C -0.149 4.149 8 C 0.095 3.905 9 N -0.485 5.485 10 C 0.093 3.907 11 C -0.152 4.152 12 C 0.510 3.490 13 O -0.544 6.544 14 N -0.691 5.691 15 C 0.136 3.864 16 C 0.161 3.839 17 H 0.032 0.968 18 C -0.127 4.127 19 C -0.107 4.107 20 C -0.144 4.144 21 C 0.172 3.828 22 N -0.589 5.589 23 C -0.248 4.248 24 H 0.070 0.930 25 C 0.008 3.992 26 N -0.899 5.899 27 Si 0.888 3.112 28 H -0.277 1.277 29 H -0.289 1.289 30 H -0.287 1.287 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.138 0.862 37 H 0.157 0.843 38 H 0.156 0.844 39 H 0.136 0.864 40 H 0.414 0.586 41 H 0.066 0.934 42 H 0.056 0.944 43 H 0.051 0.949 44 H 0.060 0.940 45 H 0.053 0.947 46 H 0.044 0.956 47 H 0.046 0.954 48 H 0.053 0.947 49 H 0.018 0.982 50 H 0.086 0.914 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.234 -5.548 -8.881 10.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.008 3.992 3 H 0.107 0.893 4 O -0.267 6.267 5 C 0.019 3.981 6 C -0.047 4.047 7 C -0.169 4.169 8 C -0.061 4.061 9 N -0.194 5.194 10 C -0.064 4.064 11 C -0.172 4.172 12 C 0.295 3.705 13 O -0.422 6.422 14 N -0.343 5.343 15 C 0.012 3.988 16 C 0.054 3.946 17 H 0.050 0.950 18 C -0.167 4.167 19 C -0.145 4.145 20 C -0.183 4.183 21 C 0.047 3.953 22 N -0.313 5.313 23 C -0.378 4.378 24 H 0.088 0.912 25 C -0.191 4.191 26 N -0.544 5.544 27 Si 0.717 3.283 28 H -0.202 1.202 29 H -0.216 1.216 30 H -0.214 1.214 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.155 0.845 37 H 0.174 0.826 38 H 0.173 0.827 39 H 0.154 0.846 40 H 0.252 0.748 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.065 0.935 48 H 0.071 0.929 49 H 0.037 0.963 50 H 0.104 0.896 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.433 -6.754 -9.695 12.064 hybrid contribution 0.038 1.800 0.286 1.823 sum -2.395 -4.954 -9.409 10.900 Atomic orbital electron populations 1.22219 0.93702 1.03399 1.03275 1.21952 0.95004 0.96806 0.85421 0.89255 1.88084 1.86739 1.33432 1.18495 1.21417 1.00182 0.91762 0.84782 1.20012 0.93669 0.96384 0.94679 1.22158 0.96017 0.99694 0.98990 1.22766 0.99670 0.93165 0.90542 1.67653 1.03367 1.19775 1.28634 1.22740 0.91985 0.95557 0.96106 1.22078 1.01001 0.98313 0.95795 1.20092 0.81118 0.84878 0.84459 1.90664 1.38194 1.26529 1.86803 1.45910 1.52563 1.31676 1.04184 1.21289 0.99687 0.94074 0.83725 1.20733 0.95789 0.86830 0.91294 0.95014 1.21940 1.01168 0.97582 0.96042 1.21365 0.99931 0.96658 0.96554 1.22191 1.00206 0.96012 0.99937 1.20823 0.97447 0.94429 0.82605 1.44140 1.64538 1.07585 1.15031 1.19261 1.20591 0.92567 1.05389 0.91198 1.25078 0.97508 0.97880 0.98683 1.69989 1.33221 1.06182 1.44977 0.86439 0.81077 0.79500 0.81250 1.20161 1.21611 1.21384 0.91659 0.91332 0.90355 0.91748 0.91679 0.84455 0.82559 0.82658 0.84619 0.74793 0.91593 0.92621 0.93003 0.92085 0.92871 0.93712 0.93521 0.92853 0.96346 0.89592 0.93636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 9.42 37.16 0.35 -1.73 16 2 C 0.07 1.07 3.14 -27.89 -0.09 0.98 16 3 H 0.09 1.33 7.79 -51.93 -0.40 0.92 16 4 O -0.35 -5.54 9.50 -55.14 -0.52 -6.07 16 5 C 0.10 1.16 5.92 36.00 0.21 1.38 16 6 C -0.04 -0.47 5.55 -104.32 -0.58 -1.05 16 7 C -0.15 -1.74 9.82 -39.44 -0.39 -2.12 16 8 C 0.10 1.06 11.18 -17.55 -0.20 0.87 16 9 N -0.48 -5.90 10.36 -13.26 -0.14 -6.04 16 10 C 0.09 0.97 11.18 -17.55 -0.20 0.78 16 11 C -0.15 -1.60 9.82 -39.44 -0.39 -1.99 16 12 C 0.51 9.64 7.23 -10.99 -0.08 9.56 16 13 O -0.54 -12.20 16.50 -14.36 -0.24 -12.44 16 14 N -0.69 -12.71 3.76 -60.29 -0.23 -12.94 16 15 C 0.14 2.52 4.43 -4.04 -0.02 2.50 16 16 C 0.16 2.99 3.00 -67.60 -0.20 2.79 16 17 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 18 C -0.13 -2.09 5.37 -26.61 -0.14 -2.23 16 19 C -0.11 -1.71 5.88 -26.69 -0.16 -1.87 16 20 C -0.14 -2.60 6.08 -26.61 -0.16 -2.76 16 21 C 0.17 3.76 5.27 -3.56 -0.02 3.74 16 22 N -0.59 -12.95 2.99 -164.55 -0.49 -13.44 16 23 C -0.25 -5.95 7.00 -15.06 -0.11 -6.06 16 24 H 0.07 1.74 5.86 -52.49 -0.31 1.43 16 25 C 0.01 0.19 5.03 -17.43 -0.09 0.10 16 26 N -0.90 -23.40 11.13 55.49 0.62 -22.78 16 27 Si 0.89 20.07 29.57 -169.99 -5.03 15.05 16 28 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 29 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 30 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 31 H 0.06 0.67 7.87 -51.93 -0.41 0.26 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.95 7.56 -51.93 -0.39 0.55 16 34 H 0.06 0.64 7.83 -51.93 -0.41 0.23 16 35 H 0.07 0.76 8.04 -51.93 -0.42 0.34 16 36 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 38 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.41 7.74 6.84 -40.82 -0.28 7.46 16 41 H 0.07 1.35 7.39 -51.93 -0.38 0.97 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.05 0.74 8.14 -51.92 -0.42 0.31 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 46 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 49 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.09 2.13 6.17 -51.93 -0.32 1.81 16 51 H 0.25 6.49 8.31 -40.82 -0.34 6.15 16 LS Contribution 407.78 15.07 6.15 6.15 Total: -1.00 -30.29 407.78 -10.50 -40.79 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -8.38 Total: 8.85 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -2.24 Total: 2.88 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: -0.24 Total: -55.20 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.76 Total: -18.51 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.03 Total: 15.05 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -30.29 -10.50 -40.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566927929.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.213 kcal (2) G-P(sol) polarization free energy of solvation -30.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds