Wall clock time and date at job start Wed Apr 1 2020 05:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47314 * 2 1 4 4 O 1.42901 * 109.47071 * 239.99626 * 2 1 3 5 5 C 1.42909 * 113.99624 * 90.00556 * 4 2 1 6 6 C 1.50694 * 109.47016 * 180.02562 * 5 4 2 7 7 C 1.38653 * 120.78799 * 269.71574 * 6 5 4 8 8 C 1.38211 * 119.16332 * 179.75295 * 7 6 5 9 9 N 1.31869 * 120.75880 * 0.53707 * 8 7 6 10 10 C 1.31866 * 121.72785 * 359.73392 * 9 8 7 11 11 C 1.38196 * 120.76833 * 359.97438 * 10 9 8 12 12 C 1.50697 * 109.46860 * 120.00042 * 2 1 3 13 13 O 1.21287 * 119.99987 * 120.00277 * 12 2 1 14 14 N 1.34777 * 120.00283 * 300.00015 * 12 2 1 15 15 C 1.46499 * 120.00068 * 180.02562 * 14 12 2 16 16 C 1.53001 * 109.46974 * 179.97438 * 15 14 12 17 17 H 1.08994 * 109.58506 * 59.75166 * 16 15 14 18 18 C 1.53189 * 109.58727 * 180.02562 * 16 15 14 19 19 C 1.53040 * 109.31446 * 174.56683 * 18 16 15 20 20 C 1.53044 * 109.53920 * 298.63355 * 19 18 16 21 21 C 1.53186 * 109.31213 * 61.36166 * 20 19 18 22 22 N 1.46929 * 109.58768 * 299.47043 * 16 15 14 23 23 C 1.36937 * 120.62856 * 6.46261 * 22 16 15 24 24 H 1.08000 * 120.00267 * 328.75701 * 23 22 16 25 25 C 1.38811 * 119.99805 * 148.76576 * 23 22 16 26 26 N 1.31615 * 120.00215 * 348.13439 * 25 23 22 27 27 Si 1.86808 * 119.99936 * 168.13724 * 25 23 22 28 28 H 1.48501 * 109.47110 * 359.97438 * 27 25 23 29 29 H 1.48497 * 109.46829 * 119.99718 * 27 25 23 30 30 H 1.48494 * 109.46836 * 239.99712 * 27 25 23 31 31 H 1.09004 * 109.46879 * 59.99910 * 1 2 3 32 32 H 1.08997 * 109.47068 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47183 * 299.99959 * 1 2 3 34 34 H 1.08997 * 109.46747 * 299.99650 * 5 4 2 35 35 H 1.08998 * 109.47174 * 59.99870 * 5 4 2 36 36 H 1.07997 * 120.42155 * 0.02562 * 7 6 5 37 37 H 1.07993 * 119.61933 * 180.29188 * 8 7 6 38 38 H 1.08002 * 119.61612 * 180.02562 * 10 9 8 39 39 H 1.08000 * 120.42252 * 179.97438 * 11 10 9 40 40 H 0.97000 * 119.99823 * 359.97438 * 14 12 2 41 41 H 1.09006 * 109.47362 * 60.00455 * 15 14 12 42 42 H 1.08994 * 109.47248 * 299.99757 * 15 14 12 43 43 H 1.09007 * 109.49522 * 294.51543 * 18 16 15 44 44 H 1.08997 * 109.50373 * 54.58101 * 18 16 15 45 45 H 1.09011 * 109.46199 * 58.64906 * 19 18 16 46 46 H 1.08998 * 109.46477 * 178.62216 * 19 18 16 47 47 H 1.08996 * 109.49779 * 181.31618 * 20 19 18 48 48 H 1.08998 * 109.49301 * 301.41532 * 20 19 18 49 49 H 1.09004 * 109.58945 * 65.15470 * 21 20 19 50 50 H 1.09001 * 109.59204 * 185.43854 * 21 20 19 51 51 H 0.97005 * 120.00242 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.2001 0.1829 -2.2941 6 6 2.7003 -0.6284 -3.4613 7 6 4.0591 -0.8076 -3.6708 8 6 4.4806 -1.5624 -4.7492 9 7 3.6075 -2.0996 -5.5788 10 6 2.3083 -1.9455 -5.4136 11 6 1.8128 -1.2088 -4.3546 12 6 2.0322 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7066 -0.2500 2.4546 15 6 2.1954 -0.9403 3.6507 16 6 1.6858 -0.2188 4.9000 17 1 0.5958 -0.2139 4.9000 18 6 2.1959 -0.9382 6.1525 19 6 1.7974 -0.1369 7.3941 20 6 2.4425 1.2498 7.3371 21 6 1.9352 1.9939 6.0980 22 7 2.1845 1.1632 4.9085 23 6 2.8690 1.6645 3.8336 24 1 3.4775 1.0096 3.2276 25 6 2.7807 3.0146 3.5229 26 7 1.8698 3.7656 4.1046 27 14 3.9549 3.7654 2.2790 28 1 4.8773 2.7171 1.7735 29 1 3.1799 4.3317 1.1460 30 1 4.7413 4.8443 2.9292 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.2539 0.6546 -2.5588 35 1 2.9320 0.9513 -2.0450 36 1 4.7791 -0.3667 -2.9973 37 1 5.5371 -1.7107 -4.9166 38 1 1.6236 -2.4010 -6.1137 39 1 0.7476 -1.0859 -4.2249 40 1 1.1493 0.5389 2.5436 41 1 3.2854 -0.9399 3.6507 42 1 1.8324 -1.9681 3.6509 43 1 1.7551 -1.9338 6.2052 44 1 3.2816 -1.0230 6.1067 45 1 0.7128 -0.0318 7.4258 46 1 2.1379 -0.6592 8.2881 47 1 2.1772 1.8114 8.2328 48 1 3.5259 1.1449 7.2803 49 1 0.8655 2.1795 6.1955 50 1 2.4631 2.9425 5.9997 51 1 1.8079 4.7089 3.8872 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566927929.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:35 Heat of formation + Delta-G solvation = -45.288332 kcal Electronic energy + Delta-G solvation = -31237.999871 eV Core-core repulsion = 27137.189242 eV Total energy + Delta-G solvation = -4100.810629 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.26382 -40.91482 -39.51266 -38.55458 -35.71968 -34.88447 -34.49300 -32.89037 -32.18131 -31.78365 -31.39881 -27.91801 -27.73726 -26.61378 -24.77696 -24.43738 -23.77751 -23.00249 -22.27460 -21.28293 -20.65428 -18.84242 -18.30932 -17.91548 -17.53203 -17.43589 -17.22169 -16.64659 -16.49327 -16.19999 -15.87547 -15.71134 -15.26195 -15.07396 -14.85533 -14.79622 -14.59521 -14.52782 -14.21519 -14.03624 -13.74601 -13.61104 -13.43666 -13.29946 -13.01320 -12.85051 -12.78221 -12.56861 -12.51694 -12.31574 -12.27511 -12.01901 -11.78964 -11.52490 -11.17289 -11.09277 -11.02371 -10.79079 -10.53583 -10.50946 -10.43447 -10.11988 -9.85750 -8.53942 -7.81398 -5.29209 0.09695 0.16641 1.37799 1.46761 1.52429 1.66502 1.98910 2.48720 2.72866 3.07751 3.33562 3.54709 3.57988 3.65365 3.72078 3.80502 3.95069 4.00548 4.06605 4.08869 4.16424 4.22846 4.28106 4.35404 4.37746 4.44063 4.55896 4.65514 4.65818 4.69029 4.73737 4.80501 4.85441 4.88140 4.95312 5.00762 5.15086 5.16387 5.22819 5.29082 5.32238 5.38628 5.47376 5.60770 5.65852 5.71773 5.76213 5.86007 5.96618 6.45952 6.71020 6.96030 7.20644 7.33048 7.89188 8.43737 9.22968 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014635 B = 0.002737 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.739056 B =10229.411588 C =11196.290108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.073 3.927 3 H 0.094 0.906 4 O -0.373 6.373 5 C 0.092 3.908 6 C -0.058 4.058 7 C -0.164 4.164 8 C 0.087 3.913 9 N -0.507 5.507 10 C 0.088 3.912 11 C -0.152 4.152 12 C 0.505 3.495 13 O -0.585 6.585 14 N -0.688 5.688 15 C 0.140 3.860 16 C 0.161 3.839 17 H 0.037 0.963 18 C -0.123 4.123 19 C -0.102 4.102 20 C -0.136 4.136 21 C 0.177 3.823 22 N -0.601 5.601 23 C -0.235 4.235 24 H 0.059 0.941 25 C -0.030 4.030 26 N -0.923 5.923 27 Si 0.932 3.068 28 H -0.282 1.282 29 H -0.281 1.281 30 H -0.297 1.297 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.140 0.860 37 H 0.177 0.823 38 H 0.185 0.815 39 H 0.160 0.840 40 H 0.414 0.586 41 H 0.042 0.958 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.051 0.949 45 H 0.059 0.941 46 H 0.072 0.928 47 H 0.064 0.936 48 H 0.043 0.957 49 H 0.004 0.996 50 H 0.051 0.949 51 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.471 -6.400 -9.107 11.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.012 3.988 3 H 0.112 0.888 4 O -0.292 6.292 5 C 0.016 3.984 6 C -0.066 4.066 7 C -0.184 4.184 8 C -0.069 4.069 9 N -0.217 5.217 10 C -0.069 4.069 11 C -0.171 4.171 12 C 0.291 3.709 13 O -0.466 6.466 14 N -0.339 5.339 15 C 0.016 3.984 16 C 0.055 3.945 17 H 0.055 0.945 18 C -0.163 4.163 19 C -0.140 4.140 20 C -0.175 4.175 21 C 0.052 3.948 22 N -0.326 5.326 23 C -0.366 4.366 24 H 0.077 0.923 25 C -0.226 4.226 26 N -0.569 5.569 27 Si 0.762 3.238 28 H -0.208 1.208 29 H -0.208 1.208 30 H -0.224 1.224 31 H 0.111 0.889 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.110 0.890 35 H 0.083 0.917 36 H 0.157 0.843 37 H 0.194 0.806 38 H 0.202 0.798 39 H 0.178 0.822 40 H 0.251 0.749 41 H 0.060 0.940 42 H 0.090 0.910 43 H 0.100 0.900 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.091 0.909 47 H 0.082 0.918 48 H 0.062 0.938 49 H 0.022 0.978 50 H 0.069 0.931 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.678 -7.609 -9.915 13.028 hybrid contribution 0.445 2.016 0.355 2.094 sum -3.233 -5.594 -9.560 11.538 Atomic orbital electron populations 1.22182 0.91092 1.03736 1.04726 1.21943 0.96854 0.96031 0.83988 0.88846 1.88047 1.87072 1.34849 1.19254 1.21610 1.01629 0.91459 0.83735 1.20202 0.94146 0.97161 0.95134 1.22322 0.96368 1.00246 0.99482 1.23102 1.00699 0.92846 0.90264 1.67702 1.04318 1.20442 1.29208 1.23266 0.91922 0.95163 0.96520 1.22360 1.02062 0.97509 0.95181 1.20788 0.80215 0.84434 0.85465 1.90634 1.40049 1.28489 1.87425 1.45925 1.52177 1.31422 1.04373 1.21247 0.98205 0.94993 0.83931 1.20877 0.95892 0.85143 0.92598 0.94547 1.21902 1.00684 0.98841 0.94839 1.21345 1.00124 0.95121 0.97394 1.22057 0.99584 0.97360 0.98521 1.20641 0.96102 0.93721 0.84356 1.44306 1.64655 1.08907 1.14714 1.19229 1.19792 0.92327 1.05228 0.92316 1.25471 0.98663 0.98327 1.00172 1.70095 1.34549 1.05939 1.46301 0.85746 0.79639 0.78303 0.80083 1.20785 1.20754 1.22449 0.88893 0.91522 0.90196 0.89037 0.91743 0.84255 0.80645 0.79833 0.82226 0.74874 0.94009 0.91031 0.90037 0.93038 0.92245 0.90897 0.91762 0.93809 0.97819 0.93077 0.94199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.64 9.42 71.98 0.68 -2.96 16 2 C 0.07 2.18 3.14 29.85 0.09 2.28 16 3 H 0.09 2.70 7.79 -2.39 -0.02 2.68 16 4 O -0.37 -11.56 9.50 -129.94 -1.23 -12.79 16 5 C 0.09 2.12 5.92 71.23 0.42 2.54 16 6 C -0.06 -1.34 5.55 -19.67 -0.11 -1.45 16 7 C -0.16 -3.81 9.82 22.36 0.22 -3.59 16 8 C 0.09 1.90 11.18 84.68 0.95 2.85 16 9 N -0.51 -11.82 10.36 -195.85 -2.03 -13.85 16 10 C 0.09 1.69 11.18 84.68 0.95 2.63 16 11 C -0.15 -2.91 9.82 22.36 0.22 -2.69 16 12 C 0.50 19.08 7.23 87.66 0.63 19.72 16 13 O -0.59 -26.61 16.50 15.99 0.26 -26.35 16 14 N -0.69 -25.24 3.76 -463.06 -1.74 -26.98 16 15 C 0.14 5.13 4.43 86.38 0.38 5.52 16 16 C 0.16 5.82 3.00 44.97 0.13 5.95 16 17 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 18 C -0.12 -3.74 5.37 30.67 0.16 -3.57 16 19 C -0.10 -2.95 5.88 30.62 0.18 -2.77 16 20 C -0.14 -4.71 6.08 30.67 0.19 -4.53 16 21 C 0.18 7.75 5.27 86.31 0.45 8.20 16 22 N -0.60 -26.42 2.99 -674.51 -2.01 -28.43 16 23 C -0.24 -11.39 7.00 84.03 0.59 -10.80 16 24 H 0.06 2.98 5.86 -2.91 -0.02 2.96 16 25 C -0.03 -1.50 5.03 84.86 0.43 -1.07 16 26 N -0.92 -48.76 11.13 21.65 0.24 -48.52 16 27 Si 0.93 41.74 29.57 68.60 2.03 43.77 16 28 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 29 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 30 H -0.30 -13.71 7.11 99.48 0.71 -13.01 16 31 H 0.09 1.61 7.87 -2.38 -0.02 1.59 16 32 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.08 1.79 7.56 -2.39 -0.02 1.78 16 34 H 0.09 1.58 7.83 -2.39 -0.02 1.56 16 35 H 0.06 1.47 8.04 -2.39 -0.02 1.45 16 36 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 37 H 0.18 2.88 8.06 -2.91 -0.02 2.86 16 38 H 0.18 2.28 8.06 -2.91 -0.02 2.25 16 39 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 40 H 0.41 15.37 6.84 -92.71 -0.63 14.73 16 41 H 0.04 1.73 7.39 -2.38 -0.02 1.72 16 42 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 44 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 46 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 48 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 49 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 50 H 0.05 2.59 6.17 -2.39 -0.01 2.57 16 51 H 0.25 12.94 8.31 -92.70 -0.77 12.17 16 Total: -1.00 -66.37 407.78 2.37 -64.00 By element: Atomic # 1 Polarization: 32.61 SS G_CDS: 0.28 Total: 32.90 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: 6.57 Total: 16.26 kcal Atomic # 7 Polarization: -112.24 SS G_CDS: -5.54 Total: -117.78 kcal Atomic # 8 Polarization: -38.17 SS G_CDS: -0.97 Total: -39.14 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -66.37 2.37 -64.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566927929.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.708 kcal (2) G-P(sol) polarization free energy of solvation -66.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds