Wall clock time and date at job start Wed Apr 1 2020 04:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47024 * 2 1 4 4 O 1.42893 * 109.47028 * 120.00561 * 2 1 3 5 5 C 1.35676 * 117.00177 * 270.00239 * 4 2 1 6 6 C 1.38918 * 119.68790 * 180.02562 * 5 4 2 7 7 C 1.38379 * 119.11096 * 179.97438 * 6 5 4 8 8 C 1.38824 * 118.48905 * 0.02562 * 7 6 5 9 9 C 1.38054 * 119.28802 * 359.97438 * 8 7 6 10 10 N 1.31970 * 120.83193 * 359.74558 * 9 8 7 11 11 C 1.50701 * 109.47030 * 240.00318 * 2 1 3 12 12 O 1.21285 * 120.00180 * 252.43072 * 11 2 1 13 13 N 1.34780 * 119.99964 * 72.43506 * 11 2 1 14 14 C 1.46928 * 120.62890 * 175.24239 * 13 11 2 15 15 C 1.53186 * 108.89025 * 233.51235 * 14 13 11 16 16 C 1.53080 * 109.29742 * 305.58027 * 15 14 13 17 17 C 1.53036 * 109.65634 * 61.15055 * 16 15 14 18 18 H 1.09001 * 109.49736 * 58.65979 * 17 16 15 19 19 C 1.53004 * 109.49418 * 178.74587 * 17 16 15 20 20 C 1.52995 * 109.47419 * 294.84090 * 19 17 16 21 21 N 1.46500 * 109.47030 * 179.97438 * 20 19 17 22 22 C 1.36943 * 120.00199 * 180.02562 * 21 20 19 23 23 H 1.08003 * 119.99253 * 359.97438 * 22 21 20 24 24 C 1.38805 * 120.00118 * 179.97438 * 22 21 20 25 25 N 1.31617 * 120.00073 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 119.99999 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47114 * 59.99889 * 26 24 22 28 28 H 1.48497 * 109.47425 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.47021 * 300.00125 * 26 24 22 30 30 C 1.46921 * 120.63009 * 355.21777 * 13 11 2 31 31 H 1.08994 * 109.47221 * 305.36537 * 1 2 3 32 32 H 1.09005 * 109.47217 * 65.36920 * 1 2 3 33 33 H 1.09004 * 109.47284 * 185.36380 * 1 2 3 34 34 H 1.07999 * 120.44265 * 359.95287 * 6 5 4 35 35 H 1.08000 * 120.75563 * 180.02562 * 7 6 5 36 36 H 1.07999 * 120.36029 * 180.02562 * 8 7 6 37 37 H 1.07999 * 119.58642 * 180.02562 * 9 8 7 38 38 H 1.09001 * 109.58545 * 353.37396 * 14 13 11 39 39 H 1.09000 * 109.58259 * 113.65746 * 14 13 11 40 40 H 1.08997 * 109.49939 * 65.39253 * 15 14 13 41 41 H 1.08999 * 109.49733 * 185.48364 * 15 14 13 42 42 H 1.09000 * 109.34553 * 301.12899 * 16 15 14 43 43 H 1.08996 * 109.45056 * 181.24744 * 16 15 14 44 44 H 1.08999 * 109.46885 * 54.84447 * 19 17 16 45 45 H 1.09002 * 109.47150 * 174.83939 * 19 17 16 46 46 H 1.08999 * 109.47384 * 300.00052 * 20 19 17 47 47 H 1.09000 * 109.47276 * 60.00306 * 20 19 17 48 48 H 0.97002 * 120.00358 * 0.02562 * 21 20 19 49 49 H 0.97003 * 120.00273 * 179.97438 * 25 24 22 50 50 H 1.09007 * 109.58418 * 246.20106 * 30 13 11 51 51 H 1.09006 * 109.58924 * 6.62337 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2115 0.0827 2.2741 6 6 2.6746 -0.5151 3.4395 7 6 2.8803 0.2677 4.5619 8 6 2.6137 1.6276 4.4786 9 6 2.1554 2.1543 3.2876 10 7 1.9741 1.3830 2.2323 11 6 2.0323 -0.7103 -1.2305 12 8 2.5334 -1.8106 -1.1336 13 7 1.9248 -0.1229 -2.4388 14 6 2.5023 -0.7554 -3.6327 15 6 3.4189 0.2522 -4.3334 16 6 2.6362 1.5372 -4.6155 17 6 2.1591 2.1493 -3.2966 18 1 3.0192 2.3591 -2.6607 19 6 1.4043 3.4495 -3.5807 20 6 2.3674 4.4789 -4.1754 21 7 1.6444 5.7236 -4.4479 22 6 2.3051 6.7953 -4.9867 23 1 3.3592 6.7229 -5.2104 24 6 1.6200 7.9745 -5.2455 25 7 0.3354 8.0627 -4.9725 26 14 2.5213 9.4365 -5.9798 27 1 3.0909 9.0560 -7.2973 28 1 1.5724 10.5648 -6.1574 29 1 3.6175 9.8512 -5.0678 30 6 1.2275 1.1617 -2.5872 31 1 -0.3633 0.5948 0.8380 32 1 -0.3634 0.4283 -0.9342 33 1 -0.3634 -1.0232 0.0961 34 1 2.8710 -1.5767 3.4692 35 1 3.2400 -0.1692 5.4816 36 1 2.7641 2.2668 5.3360 37 1 1.9469 3.2117 3.2174 38 1 3.0798 -1.6319 -3.3387 39 1 1.7028 -1.0550 -4.3103 40 1 4.2686 0.4800 -3.6899 41 1 3.7762 -0.1723 -5.2717 42 1 1.7742 1.3049 -5.2409 43 1 3.2798 2.2478 -5.1340 44 1 0.5984 3.2546 -4.2882 45 1 0.9862 3.8374 -2.6517 46 1 3.1732 4.6738 -3.4678 47 1 2.7854 4.0912 -5.1043 48 1 0.6977 5.7887 -4.2467 49 1 -0.1433 8.8869 -5.1529 50 1 0.3242 1.0207 -3.1809 51 1 0.9637 1.5502 -1.6035 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568073039.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:28 Heat of formation + Delta-G solvation = -28.336853 kcal Electronic energy + Delta-G solvation = -30649.555769 eV Core-core repulsion = 26549.480210 eV Total energy + Delta-G solvation = -4100.075558 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.18303 -40.34187 -38.48341 -37.55454 -35.27048 -33.65304 -33.05343 -32.78149 -31.58746 -30.75607 -30.18959 -27.57046 -26.24240 -24.75621 -24.03692 -23.85333 -23.16986 -22.10938 -21.38268 -20.09351 -19.37796 -18.85052 -17.46290 -17.02095 -16.91023 -16.26729 -16.09380 -15.99638 -15.20264 -14.88873 -14.81465 -14.78135 -14.59747 -14.20144 -13.79120 -13.71913 -13.50166 -13.43520 -13.29623 -13.03272 -12.98332 -12.84015 -12.54898 -12.34976 -12.20470 -11.91986 -11.51063 -11.38485 -11.27489 -11.01767 -10.91931 -10.77790 -10.54696 -10.50497 -10.30149 -10.26376 -10.06421 -9.93116 -9.77149 -9.68602 -8.87829 -8.82530 -8.77093 -6.91217 -5.76364 -3.04832 0.84106 0.94491 2.19058 2.38424 3.10971 3.43946 3.47380 3.48205 3.49301 3.95921 4.11920 4.53537 4.55523 4.59680 4.63587 4.71708 4.73826 4.80369 4.81354 4.87581 4.89838 4.90665 5.15661 5.23187 5.28830 5.36742 5.39990 5.42553 5.51381 5.55192 5.62946 5.63195 5.69175 5.77065 5.79257 5.85170 5.86785 5.98732 6.03918 6.08713 6.21165 6.25870 6.31482 6.40227 6.42951 6.85139 6.89161 6.90517 7.14278 7.53230 7.69471 7.91753 8.43037 9.53796 10.12542 10.46845 11.46613 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009701 B = 0.002457 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2885.709553 B =11395.376898 C =13547.462558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.073 3.927 3 H 0.116 0.884 4 O -0.278 6.278 5 C 0.322 3.678 6 C -0.190 4.190 7 C -0.041 4.041 8 C -0.214 4.214 9 C 0.143 3.857 10 N -0.540 5.540 11 C 0.520 3.480 12 O -0.527 6.527 13 N -0.605 5.605 14 C 0.113 3.887 15 C -0.134 4.134 16 C -0.118 4.118 17 C -0.097 4.097 18 H 0.075 0.925 19 C -0.120 4.120 20 C 0.154 3.846 21 N -0.734 5.734 22 C -0.239 4.239 23 H 0.069 0.931 24 C -0.015 4.015 25 N -0.935 5.935 26 Si 0.907 3.093 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 C 0.103 3.897 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.162 0.838 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.076 0.924 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.016 0.984 47 H 0.020 0.980 48 H 0.383 0.617 49 H 0.255 0.745 50 H 0.077 0.923 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.891 -19.668 15.636 25.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.013 3.987 3 H 0.134 0.866 4 O -0.184 6.184 5 C 0.143 3.857 6 C -0.211 4.211 7 C -0.066 4.066 8 C -0.234 4.234 9 C -0.012 4.012 10 N -0.264 5.264 11 C 0.307 3.693 12 O -0.403 6.403 13 N -0.339 5.339 14 C -0.009 4.009 15 C -0.173 4.173 16 C -0.155 4.155 17 C -0.117 4.117 18 H 0.093 0.907 19 C -0.158 4.158 20 C 0.027 3.973 21 N -0.378 5.378 22 C -0.370 4.370 23 H 0.087 0.913 24 C -0.210 4.210 25 N -0.583 5.583 26 Si 0.738 3.262 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 C -0.020 4.020 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.160 0.840 35 H 0.159 0.841 36 H 0.156 0.844 37 H 0.179 0.821 38 H 0.108 0.892 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.034 0.966 47 H 0.038 0.962 48 H 0.217 0.783 49 H 0.065 0.935 50 H 0.095 0.905 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.023 -20.104 14.781 25.035 hybrid contribution 0.378 0.879 0.325 1.010 sum 2.401 -19.225 15.107 24.568 Atomic orbital electron populations 1.22281 0.92213 1.03873 1.04307 1.22089 0.96016 0.98053 0.82575 0.86608 1.86367 1.79898 1.34470 1.17658 1.19906 0.91296 0.87491 0.86972 1.21078 1.06324 1.02213 0.91444 1.21425 0.94124 0.93468 0.97617 1.22015 1.05108 0.96206 1.00089 1.22503 0.92182 0.99394 0.87153 1.67282 1.21808 1.04599 1.32690 1.20193 0.79039 0.86015 0.84083 1.90706 1.44228 1.19564 1.85796 1.48005 1.56235 1.22725 1.06924 1.21640 0.97208 0.96425 0.85608 1.21945 0.98495 0.96148 1.00663 1.21661 1.00454 0.96363 0.97062 1.21472 0.98579 0.94572 0.97034 0.90666 1.21712 0.98961 0.93667 1.01480 1.20659 0.93632 0.86565 0.96479 1.42367 1.09808 1.09446 1.76209 1.19188 0.93468 0.91034 1.33351 0.91315 1.24735 0.95880 0.98144 1.02289 1.69646 1.07413 1.27103 1.54173 0.86268 0.78449 0.82439 0.79046 1.21278 1.21669 1.21284 1.22121 0.95343 0.82415 1.02105 0.90484 0.89837 0.91127 0.84038 0.84135 0.84446 0.82052 0.89193 0.91264 0.91591 0.90555 0.91607 0.90499 0.91635 0.91654 0.96633 0.96176 0.78337 0.93477 0.90492 0.89318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 9.10 37.16 0.34 -1.28 16 2 C 0.07 0.86 2.05 -27.88 -0.06 0.80 16 3 H 0.12 1.36 6.07 -51.93 -0.32 1.04 16 4 O -0.28 -3.66 9.32 -38.33 -0.36 -4.02 16 5 C 0.32 3.76 7.45 -17.12 -0.13 3.63 16 6 C -0.19 -1.77 10.04 -39.28 -0.39 -2.16 16 7 C -0.04 -0.29 10.17 -39.31 -0.40 -0.69 16 8 C -0.21 -1.49 10.11 -39.43 -0.40 -1.89 16 9 C 0.14 1.24 11.18 -17.56 -0.20 1.04 16 10 N -0.54 -6.05 8.64 -13.33 -0.12 -6.16 16 11 C 0.52 6.91 7.04 -10.98 -0.08 6.84 16 12 O -0.53 -8.78 15.98 -14.04 -0.22 -9.00 16 13 N -0.60 -6.83 2.97 -172.77 -0.51 -7.34 16 14 C 0.11 1.17 6.41 -3.71 -0.02 1.15 16 15 C -0.13 -1.33 6.09 -26.59 -0.16 -1.49 16 16 C -0.12 -1.31 4.95 -26.67 -0.13 -1.44 16 17 C -0.10 -1.14 2.34 -90.50 -0.21 -1.35 16 18 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 19 C -0.12 -1.76 4.80 -26.73 -0.13 -1.89 16 20 C 0.15 3.00 6.02 -4.04 -0.02 2.97 16 21 N -0.73 -18.50 5.60 -59.91 -0.34 -18.84 16 22 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 23 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 24 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 25 N -0.93 -28.21 13.06 55.49 0.72 -27.48 16 26 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 29 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 30 C 0.10 1.04 4.48 -3.72 -0.02 1.03 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.69 5.96 -51.93 -0.31 0.38 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 35 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 36 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 37 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.09 1.02 7.03 -51.93 -0.37 0.66 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.08 0.95 6.51 -51.93 -0.34 0.61 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.02 0.40 6.54 -51.93 -0.34 0.06 16 48 H 0.38 10.08 7.67 -40.82 -0.31 9.77 16 49 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 50 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 51 H 0.09 0.84 4.74 -51.93 -0.25 0.59 16 LS Contribution 406.65 15.07 6.13 6.13 Total: -1.00 -34.58 406.65 -10.09 -44.67 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -8.12 Total: 6.79 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -2.26 Total: -2.12 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: -0.24 Total: -59.82 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -0.58 Total: -13.02 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.58 -10.09 -44.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568073039.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.337 kcal (2) G-P(sol) polarization free energy of solvation -34.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds