Wall clock time and date at job start Wed Apr 1 2020 04:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47024 * 2 1 4 4 O 1.42893 * 109.47028 * 120.00561 * 2 1 3 5 5 C 1.35676 * 117.00177 * 270.00239 * 4 2 1 6 6 C 1.38918 * 119.68790 * 180.02562 * 5 4 2 7 7 C 1.38379 * 119.11096 * 179.97438 * 6 5 4 8 8 C 1.38824 * 118.48905 * 0.02562 * 7 6 5 9 9 C 1.38054 * 119.28802 * 359.97438 * 8 7 6 10 10 N 1.31970 * 120.83193 * 359.74558 * 9 8 7 11 11 C 1.50701 * 109.47030 * 240.00318 * 2 1 3 12 12 O 1.21285 * 120.00180 * 252.43072 * 11 2 1 13 13 N 1.34780 * 119.99964 * 72.43506 * 11 2 1 14 14 C 1.46928 * 120.62890 * 175.24239 * 13 11 2 15 15 C 1.53186 * 108.89025 * 233.51235 * 14 13 11 16 16 C 1.53080 * 109.29742 * 305.58027 * 15 14 13 17 17 C 1.53036 * 109.65634 * 61.15055 * 16 15 14 18 18 H 1.09001 * 109.49736 * 58.65979 * 17 16 15 19 19 C 1.53004 * 109.49418 * 178.74587 * 17 16 15 20 20 C 1.52995 * 109.47419 * 294.84090 * 19 17 16 21 21 N 1.46500 * 109.47030 * 179.97438 * 20 19 17 22 22 C 1.36943 * 120.00199 * 180.02562 * 21 20 19 23 23 H 1.08003 * 119.99253 * 359.97438 * 22 21 20 24 24 C 1.38805 * 120.00118 * 179.97438 * 22 21 20 25 25 N 1.31617 * 120.00073 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 119.99999 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47114 * 59.99889 * 26 24 22 28 28 H 1.48497 * 109.47425 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.47021 * 300.00125 * 26 24 22 30 30 C 1.46921 * 120.63009 * 355.21777 * 13 11 2 31 31 H 1.08994 * 109.47221 * 305.36537 * 1 2 3 32 32 H 1.09005 * 109.47217 * 65.36920 * 1 2 3 33 33 H 1.09004 * 109.47284 * 185.36380 * 1 2 3 34 34 H 1.07999 * 120.44265 * 359.95287 * 6 5 4 35 35 H 1.08000 * 120.75563 * 180.02562 * 7 6 5 36 36 H 1.07999 * 120.36029 * 180.02562 * 8 7 6 37 37 H 1.07999 * 119.58642 * 180.02562 * 9 8 7 38 38 H 1.09001 * 109.58545 * 353.37396 * 14 13 11 39 39 H 1.09000 * 109.58259 * 113.65746 * 14 13 11 40 40 H 1.08997 * 109.49939 * 65.39253 * 15 14 13 41 41 H 1.08999 * 109.49733 * 185.48364 * 15 14 13 42 42 H 1.09000 * 109.34553 * 301.12899 * 16 15 14 43 43 H 1.08996 * 109.45056 * 181.24744 * 16 15 14 44 44 H 1.08999 * 109.46885 * 54.84447 * 19 17 16 45 45 H 1.09002 * 109.47150 * 174.83939 * 19 17 16 46 46 H 1.08999 * 109.47384 * 300.00052 * 20 19 17 47 47 H 1.09000 * 109.47276 * 60.00306 * 20 19 17 48 48 H 0.97002 * 120.00358 * 0.02562 * 21 20 19 49 49 H 0.97003 * 120.00273 * 179.97438 * 25 24 22 50 50 H 1.09007 * 109.58418 * 246.20106 * 30 13 11 51 51 H 1.09006 * 109.58924 * 6.62337 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2115 0.0827 2.2741 6 6 2.6746 -0.5151 3.4395 7 6 2.8803 0.2677 4.5619 8 6 2.6137 1.6276 4.4786 9 6 2.1554 2.1543 3.2876 10 7 1.9741 1.3830 2.2323 11 6 2.0323 -0.7103 -1.2305 12 8 2.5334 -1.8106 -1.1336 13 7 1.9248 -0.1229 -2.4388 14 6 2.5023 -0.7554 -3.6327 15 6 3.4189 0.2522 -4.3334 16 6 2.6362 1.5372 -4.6155 17 6 2.1591 2.1493 -3.2966 18 1 3.0192 2.3591 -2.6607 19 6 1.4043 3.4495 -3.5807 20 6 2.3674 4.4789 -4.1754 21 7 1.6444 5.7236 -4.4479 22 6 2.3051 6.7953 -4.9867 23 1 3.3592 6.7229 -5.2104 24 6 1.6200 7.9745 -5.2455 25 7 0.3354 8.0627 -4.9725 26 14 2.5213 9.4365 -5.9798 27 1 3.0909 9.0560 -7.2973 28 1 1.5724 10.5648 -6.1574 29 1 3.6175 9.8512 -5.0678 30 6 1.2275 1.1617 -2.5872 31 1 -0.3633 0.5948 0.8380 32 1 -0.3634 0.4283 -0.9342 33 1 -0.3634 -1.0232 0.0961 34 1 2.8710 -1.5767 3.4692 35 1 3.2400 -0.1692 5.4816 36 1 2.7641 2.2668 5.3360 37 1 1.9469 3.2117 3.2174 38 1 3.0798 -1.6319 -3.3387 39 1 1.7028 -1.0550 -4.3103 40 1 4.2686 0.4800 -3.6899 41 1 3.7762 -0.1723 -5.2717 42 1 1.7742 1.3049 -5.2409 43 1 3.2798 2.2478 -5.1340 44 1 0.5984 3.2546 -4.2882 45 1 0.9862 3.8374 -2.6517 46 1 3.1732 4.6738 -3.4678 47 1 2.7854 4.0912 -5.1043 48 1 0.6977 5.7887 -4.2467 49 1 -0.1433 8.8869 -5.1529 50 1 0.3242 1.0207 -3.1809 51 1 0.9637 1.5502 -1.6035 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568073039.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:27 Heat of formation + Delta-G solvation = -50.118644 kcal Electronic energy + Delta-G solvation = -30650.500298 eV Core-core repulsion = 26549.480210 eV Total energy + Delta-G solvation = -4101.020087 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.02124 -41.18419 -39.37278 -38.54496 -36.86658 -34.94130 -34.20980 -33.43928 -32.75460 -32.18974 -30.91588 -29.06443 -27.14757 -25.82176 -25.51949 -24.53063 -23.95840 -23.49203 -22.51376 -21.20888 -20.27642 -19.65463 -19.10562 -18.28592 -17.78379 -17.08485 -16.91472 -16.77593 -16.61164 -16.09473 -15.96366 -15.64477 -15.48286 -15.39236 -15.29850 -14.83957 -14.56804 -14.47210 -14.36734 -14.02593 -14.01672 -13.82283 -13.50130 -13.26999 -13.03004 -12.87887 -12.83050 -12.78581 -12.46514 -12.43444 -12.22526 -12.12898 -11.98301 -11.82376 -11.67211 -11.47905 -11.35092 -10.93332 -10.89071 -10.79042 -10.58717 -9.76116 -9.51888 -8.97293 -7.94277 -5.22741 0.18542 0.31621 1.27240 1.44133 1.47907 1.50652 1.56892 2.26869 2.57083 2.81020 3.19995 3.27624 3.39200 3.65699 3.74367 3.82271 3.86770 3.92409 4.02242 4.04231 4.10506 4.17856 4.21378 4.31200 4.33029 4.35622 4.49911 4.54406 4.59521 4.63129 4.66686 4.75904 4.79362 4.82085 4.84937 4.91968 4.96892 5.02697 5.06734 5.09226 5.24859 5.27906 5.33191 5.39969 5.46394 5.49839 5.52889 5.54613 6.09845 6.23026 6.28863 6.83260 6.93767 7.34870 8.12222 8.35032 9.29096 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009701 B = 0.002457 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2885.709553 B =11395.376898 C =13547.462558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.075 3.925 3 H 0.114 0.886 4 O -0.302 6.302 5 C 0.291 3.709 6 C -0.202 4.202 7 C -0.036 4.036 8 C -0.203 4.203 9 C 0.124 3.876 10 N -0.561 5.561 11 C 0.517 3.483 12 O -0.568 6.568 13 N -0.599 5.599 14 C 0.110 3.890 15 C -0.125 4.125 16 C -0.116 4.116 17 C -0.087 4.087 18 H 0.065 0.935 19 C -0.105 4.105 20 C 0.152 3.848 21 N -0.748 5.748 22 C -0.248 4.248 23 H 0.072 0.928 24 C -0.075 4.075 25 N -0.969 5.969 26 Si 0.972 3.028 27 H -0.278 1.278 28 H -0.294 1.294 29 H -0.279 1.279 30 C 0.105 3.895 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.066 0.934 34 H 0.147 0.853 35 H 0.175 0.825 36 H 0.170 0.830 37 H 0.180 0.820 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.054 0.946 41 H 0.095 0.905 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.010 0.990 47 H 0.024 0.976 48 H 0.375 0.625 49 H 0.252 0.748 50 H 0.097 0.903 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.210 -19.610 16.355 25.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.015 3.985 3 H 0.131 0.869 4 O -0.209 6.209 5 C 0.113 3.887 6 C -0.223 4.223 7 C -0.061 4.061 8 C -0.223 4.223 9 C -0.031 4.031 10 N -0.285 5.285 11 C 0.305 3.695 12 O -0.447 6.447 13 N -0.331 5.331 14 C -0.011 4.011 15 C -0.163 4.163 16 C -0.154 4.154 17 C -0.107 4.107 18 H 0.084 0.916 19 C -0.144 4.144 20 C 0.026 3.974 21 N -0.390 5.390 22 C -0.379 4.379 23 H 0.090 0.910 24 C -0.267 4.267 25 N -0.619 5.619 26 Si 0.801 3.199 27 H -0.204 1.204 28 H -0.220 1.220 29 H -0.205 1.205 30 C -0.017 4.017 31 H 0.097 0.903 32 H 0.117 0.883 33 H 0.085 0.915 34 H 0.165 0.835 35 H 0.193 0.807 36 H 0.187 0.813 37 H 0.197 0.803 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.073 0.927 41 H 0.114 0.886 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.083 0.917 46 H 0.028 0.972 47 H 0.042 0.958 48 H 0.207 0.793 49 H 0.061 0.939 50 H 0.115 0.885 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.367 -20.052 15.496 25.452 hybrid contribution 0.346 0.861 0.174 0.944 sum 2.713 -19.192 15.669 24.924 Atomic orbital electron populations 1.22241 0.90666 1.03794 1.05146 1.22094 0.97120 0.97358 0.81879 0.86884 1.86324 1.80642 1.35546 1.18378 1.20193 0.93256 0.88004 0.87217 1.21350 1.06410 1.02927 0.91580 1.21866 0.92859 0.93436 0.97956 1.22403 1.03028 0.96584 1.00289 1.22980 0.92506 1.00163 0.87420 1.67221 1.22560 1.04688 1.34068 1.20529 0.78442 0.85623 0.84942 1.90677 1.46229 1.21375 1.86415 1.48066 1.55632 1.22727 1.06723 1.21752 0.97813 0.96091 0.85482 1.21875 0.97746 0.95436 1.01267 1.21638 1.00728 0.96496 0.96519 1.21335 0.98212 0.93616 0.97560 0.91623 1.21543 0.98121 0.93566 1.01143 1.20832 0.94209 0.85690 0.96694 1.42598 1.09671 1.10734 1.76033 1.19588 0.93818 0.92002 1.32540 0.90962 1.25550 0.96737 1.00938 1.03487 1.69797 1.08828 1.27546 1.55749 0.85236 0.77270 0.78901 0.78517 1.20382 1.21994 1.20491 1.22165 0.95304 0.81426 1.02770 0.90309 0.88326 0.91506 0.83535 0.80745 0.81293 0.80310 0.90369 0.89324 0.92745 0.88642 0.90591 0.91769 0.91183 0.91658 0.97166 0.95774 0.79350 0.93935 0.88501 0.88532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 9.10 71.98 0.66 -2.37 16 2 C 0.08 1.80 2.05 29.85 0.06 1.86 16 3 H 0.11 2.70 6.07 -2.39 -0.01 2.69 16 4 O -0.30 -8.29 9.32 -71.20 -0.66 -8.95 16 5 C 0.29 6.94 7.45 84.79 0.63 7.57 16 6 C -0.20 -3.70 10.04 22.47 0.23 -3.47 16 7 C -0.04 -0.43 10.17 22.44 0.23 -0.20 16 8 C -0.20 -2.35 10.11 22.37 0.23 -2.12 16 9 C 0.12 2.02 11.18 84.63 0.95 2.96 16 10 N -0.56 -12.57 8.64 -308.94 -2.67 -15.24 16 11 C 0.52 13.87 7.04 87.66 0.62 14.49 16 12 O -0.57 -19.49 15.98 15.69 0.25 -19.24 16 13 N -0.60 -13.00 2.97 -818.91 -2.44 -15.44 16 14 C 0.11 2.15 6.41 86.36 0.55 2.71 16 15 C -0.13 -2.30 6.09 30.68 0.19 -2.11 16 16 C -0.12 -2.40 4.95 30.63 0.15 -2.25 16 17 C -0.09 -1.95 2.34 -10.72 -0.03 -1.97 16 18 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 19 C -0.11 -2.98 4.80 30.59 0.15 -2.83 16 20 C 0.15 5.83 6.02 86.38 0.52 6.35 16 21 N -0.75 -37.67 5.60 -343.46 -1.92 -39.60 16 22 C -0.25 -13.86 9.99 84.03 0.84 -13.02 16 23 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 24 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 25 N -0.97 -58.86 13.06 21.65 0.28 -58.58 16 26 Si 0.97 45.89 29.55 68.60 2.03 47.91 16 27 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 28 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 29 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 30 C 0.11 1.97 4.48 86.36 0.39 2.35 16 31 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.10 1.49 5.96 -2.38 -0.01 1.47 16 33 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 35 H 0.18 0.82 8.06 -2.91 -0.02 0.80 16 36 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 37 H 0.18 2.05 8.06 -2.91 -0.02 2.02 16 38 H 0.08 1.76 7.03 -2.39 -0.02 1.75 16 39 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.06 1.51 6.51 -2.39 -0.02 1.49 16 44 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 47 H 0.02 0.93 6.54 -2.39 -0.02 0.91 16 48 H 0.37 19.86 7.67 -92.71 -0.71 19.15 16 49 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 50 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 51 H 0.10 1.69 4.74 -2.38 -0.01 1.68 16 Total: -1.00 -75.68 406.65 1.91 -73.78 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: 0.22 Total: 31.24 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 6.82 Total: 4.13 kcal Atomic # 7 Polarization: -122.11 SS G_CDS: -6.75 Total: -128.86 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: -0.41 Total: -28.20 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.91 kcal Total: -75.68 1.91 -73.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568073039.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.659 kcal (2) G-P(sol) polarization free energy of solvation -75.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds