Wall clock time and date at job start Wed Apr 1 2020 04:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47486 * 2 1 4 4 O 1.42906 * 109.46996 * 239.99405 * 2 1 3 5 5 C 1.35674 * 116.99340 * 90.00458 * 4 2 1 6 6 C 1.38924 * 119.68434 * 179.97438 * 5 4 2 7 7 C 1.38372 * 119.11631 * 179.97438 * 6 5 4 8 8 C 1.38833 * 118.48310 * 359.97438 * 7 6 5 9 9 C 1.38050 * 119.29018 * 0.02562 * 8 7 6 10 10 N 1.31960 * 120.82972 * 359.73931 * 9 8 7 11 11 C 1.50708 * 109.47001 * 120.00081 * 2 1 3 12 12 O 1.21283 * 120.00057 * 114.99439 * 11 2 1 13 13 N 1.34770 * 119.99673 * 294.99755 * 11 2 1 14 14 C 1.46927 * 120.63304 * 0.02562 * 13 11 2 15 15 C 1.53196 * 108.77413 * 233.58546 * 14 13 11 16 16 C 1.53031 * 109.31477 * 305.36304 * 15 14 13 17 17 C 1.53046 * 109.53726 * 61.36734 * 16 15 14 18 18 H 1.08990 * 109.49711 * 58.58414 * 17 16 15 19 19 C 1.52997 * 109.49842 * 178.68561 * 17 16 15 20 20 C 1.53007 * 109.46916 * 294.99868 * 19 17 16 21 21 N 1.46500 * 109.47175 * 180.02562 * 20 19 17 22 22 C 1.36936 * 120.00144 * 179.97438 * 21 20 19 23 23 H 1.08003 * 119.99908 * 359.97438 * 22 21 20 24 24 C 1.38811 * 120.00228 * 180.02562 * 22 21 20 25 25 N 1.31620 * 119.99624 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00210 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46927 * 359.97438 * 26 24 22 28 28 H 1.48509 * 109.46924 * 119.99583 * 26 24 22 29 29 H 1.48490 * 109.47342 * 239.99870 * 26 24 22 30 30 C 1.46923 * 120.63141 * 179.97438 * 13 11 2 31 31 H 1.09003 * 109.47460 * 300.00484 * 1 2 3 32 32 H 1.09000 * 109.47480 * 60.00202 * 1 2 3 33 33 H 1.09000 * 109.47578 * 180.02562 * 1 2 3 34 34 H 1.08007 * 120.43739 * 359.97438 * 6 5 4 35 35 H 1.08004 * 120.75956 * 180.02562 * 7 6 5 36 36 H 1.07998 * 120.35386 * 180.02562 * 8 7 6 37 37 H 1.07993 * 119.58091 * 180.02562 * 9 8 7 38 38 H 1.08993 * 109.58956 * 113.79989 * 14 13 11 39 39 H 1.08999 * 109.70338 * 353.44355 * 14 13 11 40 40 H 1.09004 * 109.49841 * 185.40709 * 15 14 13 41 41 H 1.08998 * 109.52227 * 65.33696 * 15 14 13 42 42 H 1.08995 * 109.46212 * 301.34533 * 16 15 14 43 43 H 1.09006 * 109.46201 * 181.38399 * 16 15 14 44 44 H 1.09000 * 109.47293 * 54.99131 * 19 17 16 45 45 H 1.08999 * 109.47661 * 175.00128 * 19 17 16 46 46 H 1.09000 * 109.47221 * 300.00037 * 20 19 17 47 47 H 1.08999 * 109.47259 * 60.00265 * 20 19 17 48 48 H 0.97002 * 119.99901 * 0.02562 * 21 20 19 49 49 H 0.97009 * 119.99924 * 180.02562 * 25 24 22 50 50 H 1.09009 * 109.58590 * 6.62804 * 30 13 11 51 51 H 1.08995 * 109.59117 * 246.20038 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6738 -1.1668 5 6 2.2116 0.0828 -2.2741 6 6 2.6747 -0.5149 -3.4395 7 6 2.8795 0.2677 -4.5621 8 6 2.6120 1.6275 -4.4790 9 6 2.1538 2.1541 -3.2880 10 7 1.9638 1.3812 -2.2355 11 6 2.0323 -0.7105 1.2305 12 8 2.6528 -1.7468 1.1216 13 7 1.7918 -0.1942 2.4520 14 6 1.0410 1.0600 2.6001 15 6 1.8682 2.0329 3.4463 16 6 2.2391 1.3623 4.7710 17 6 3.0885 0.1194 4.4952 18 1 3.9856 0.4062 3.9467 19 6 3.4862 -0.5319 5.8213 20 6 4.3986 0.4165 6.6018 21 7 4.7800 -0.2073 7.8713 22 6 5.5996 0.4592 8.7427 23 1 5.9652 1.4445 8.4938 24 6 5.9614 -0.1321 9.9453 25 7 5.5162 -1.3331 10.2483 26 14 7.0800 0.7767 11.1337 27 1 7.4396 2.0991 10.5619 28 1 6.3753 0.9709 12.4265 29 1 8.3145 -0.0176 11.3572 30 6 2.2745 -0.8754 3.6609 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 2.8721 -1.5764 -3.4689 35 1 3.2385 -0.1694 -5.4822 36 1 2.7609 2.2664 -5.3369 37 1 1.9439 3.2112 -3.2183 38 1 0.0911 0.8609 3.0961 39 1 0.8562 1.4958 1.6182 40 1 1.2832 2.9310 3.6445 41 1 2.7769 2.3022 2.9079 42 1 1.3303 1.0715 5.2978 43 1 2.8070 2.0611 5.3853 44 1 2.5908 -0.7388 6.4074 45 1 4.0150 -1.4643 5.6241 46 1 5.2940 0.6236 6.0157 47 1 3.8699 1.3490 6.7992 48 1 4.4525 -1.0927 8.0943 49 1 5.7687 -1.7462 11.0890 50 1 2.9059 -1.7179 3.3782 51 1 1.4251 -1.2321 4.2433 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568073040.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:32 Heat of formation + Delta-G solvation = -25.946814 kcal Electronic energy + Delta-G solvation = -30197.013892 eV Core-core repulsion = 26097.041973 eV Total energy + Delta-G solvation = -4099.971918 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.26369 -40.38724 -38.54318 -37.50545 -35.45316 -33.80575 -32.92361 -32.33780 -32.04494 -30.78820 -30.28473 -27.55458 -26.23891 -24.83977 -24.16868 -23.85277 -22.98843 -22.33398 -21.36863 -20.07575 -19.42003 -18.94528 -17.49229 -17.05462 -16.92456 -16.35297 -16.15037 -15.97228 -15.40151 -14.92746 -14.82374 -14.73962 -14.43844 -14.30097 -13.96523 -13.79068 -13.52928 -13.47727 -13.28400 -13.14319 -12.97852 -12.85431 -12.64114 -12.41720 -12.21515 -11.88822 -11.55279 -11.40359 -11.23281 -11.02662 -10.91994 -10.76804 -10.55139 -10.46628 -10.38412 -10.16558 -10.07073 -9.99411 -9.80742 -9.65443 -8.92269 -8.85748 -8.76235 -6.87728 -5.73470 -3.01819 0.72788 0.83322 2.17053 2.36231 3.06674 3.35706 3.45093 3.50370 3.52888 3.82522 4.06634 4.42568 4.48607 4.53101 4.60278 4.61462 4.64315 4.72382 4.77331 4.78750 4.81103 4.92711 5.10852 5.18609 5.19567 5.28072 5.28782 5.40319 5.51693 5.56953 5.58876 5.62919 5.68444 5.73378 5.75561 5.76468 5.92158 5.96967 5.99734 6.11319 6.21481 6.25842 6.36378 6.44961 6.49920 6.81472 6.89953 6.94697 7.14759 7.40274 7.72987 7.93361 8.45751 9.56562 10.15939 10.50291 11.49624 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020589 B = 0.001743 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.624718 B =16056.191393 C =16217.795789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.074 3.926 3 H 0.114 0.886 4 O -0.276 6.276 5 C 0.324 3.676 6 C -0.188 4.188 7 C -0.040 4.040 8 C -0.215 4.215 9 C 0.140 3.860 10 N -0.543 5.543 11 C 0.516 3.484 12 O -0.521 6.521 13 N -0.604 5.604 14 C 0.098 3.902 15 C -0.136 4.136 16 C -0.118 4.118 17 C -0.095 4.095 18 H 0.074 0.926 19 C -0.120 4.120 20 C 0.154 3.846 21 N -0.735 5.735 22 C -0.238 4.238 23 H 0.070 0.930 24 C -0.016 4.016 25 N -0.934 5.934 26 Si 0.907 3.093 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 C 0.117 3.883 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.137 0.863 37 H 0.160 0.840 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.065 0.935 46 H 0.016 0.984 47 H 0.020 0.980 48 H 0.383 0.617 49 H 0.254 0.746 50 H 0.094 0.906 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.993 7.687 -31.428 35.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.014 3.986 3 H 0.132 0.868 4 O -0.181 6.181 5 C 0.145 3.855 6 C -0.209 4.209 7 C -0.065 4.065 8 C -0.235 4.235 9 C -0.015 4.015 10 N -0.267 5.267 11 C 0.302 3.698 12 O -0.396 6.396 13 N -0.339 5.339 14 C -0.025 4.025 15 C -0.174 4.174 16 C -0.156 4.156 17 C -0.115 4.115 18 H 0.092 0.908 19 C -0.158 4.158 20 C 0.027 3.973 21 N -0.379 5.379 22 C -0.369 4.369 23 H 0.088 0.912 24 C -0.212 4.212 25 N -0.583 5.583 26 Si 0.738 3.262 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 C -0.004 4.004 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.161 0.839 35 H 0.159 0.841 36 H 0.155 0.845 37 H 0.177 0.823 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.033 0.967 47 H 0.038 0.962 48 H 0.217 0.783 49 H 0.064 0.936 50 H 0.112 0.888 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.827 7.307 -30.590 34.356 hybrid contribution 0.781 0.083 0.127 0.795 sum -13.046 7.390 -30.463 33.953 Atomic orbital electron populations 1.22347 0.92387 1.03982 1.04151 1.22057 0.95806 0.97937 0.82768 0.86834 1.86393 1.79792 1.34359 1.17594 1.19905 0.91130 0.87421 0.87030 1.21121 1.06002 1.02377 0.91367 1.21444 0.93943 0.93451 0.97685 1.22002 1.05234 0.96241 1.00011 1.22429 0.92583 0.99190 0.87322 1.67247 1.22035 1.04739 1.32729 1.20172 0.80051 0.85464 0.84063 1.90742 1.39729 1.23212 1.85924 1.47994 1.55537 1.24796 1.05544 1.22039 0.95046 0.84170 1.01249 1.21953 1.00486 0.97972 0.96990 1.21661 1.00264 0.97285 0.96362 1.21465 0.98313 0.95218 0.96500 0.90803 1.21700 1.00344 0.99527 0.94228 1.20665 0.94699 0.94366 0.87573 1.42391 1.58717 1.19910 1.16843 1.19286 1.20973 0.99329 0.97306 0.91189 1.24753 1.01250 0.96866 0.98334 1.69677 1.49254 1.14921 1.24399 0.86112 0.80213 0.78713 0.81145 1.20588 1.21878 1.21883 1.21792 0.98807 0.95827 0.84014 0.89657 0.90730 0.91120 0.83883 0.84053 0.84484 0.82269 0.90732 0.89510 0.90497 0.91436 0.91596 0.90498 0.91707 0.91677 0.96658 0.96186 0.78327 0.93601 0.88806 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 9.10 37.15 0.34 -1.01 16 2 C 0.07 0.79 2.07 -27.88 -0.06 0.73 16 3 H 0.11 1.12 6.28 -51.93 -0.33 0.79 16 4 O -0.28 -3.42 9.30 -38.58 -0.36 -3.78 16 5 C 0.32 3.41 7.45 -17.12 -0.13 3.29 16 6 C -0.19 -1.59 10.04 -39.28 -0.39 -1.98 16 7 C -0.04 -0.24 10.17 -39.31 -0.40 -0.64 16 8 C -0.21 -1.17 10.11 -39.43 -0.40 -1.56 16 9 C 0.14 0.93 11.18 -17.57 -0.20 0.74 16 10 N -0.54 -5.09 8.65 -13.33 -0.12 -5.20 16 11 C 0.52 6.81 7.12 -10.98 -0.08 6.73 16 12 O -0.52 -9.08 15.92 -14.30 -0.23 -9.31 16 13 N -0.60 -6.75 2.97 -172.74 -0.51 -7.26 16 14 C 0.10 0.77 4.97 -3.71 -0.02 0.75 16 15 C -0.14 -1.16 6.08 -26.61 -0.16 -1.32 16 16 C -0.12 -1.31 4.95 -26.69 -0.13 -1.44 16 17 C -0.10 -1.24 2.34 -90.47 -0.21 -1.45 16 18 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 19 C -0.12 -1.93 4.80 -26.73 -0.13 -2.06 16 20 C 0.15 3.15 6.02 -4.04 -0.02 3.12 16 21 N -0.73 -19.17 5.60 -59.91 -0.34 -19.51 16 22 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 23 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 24 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 25 N -0.93 -28.83 13.06 55.49 0.72 -28.10 16 26 Si 0.91 22.80 29.55 -169.99 -5.02 17.78 16 27 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 29 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 30 C 0.12 1.46 5.72 -3.69 -0.02 1.43 16 31 H 0.08 0.51 5.41 -51.93 -0.28 0.23 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 35 H 0.14 0.45 8.06 -52.48 -0.42 0.02 16 36 H 0.14 0.38 8.06 -52.49 -0.42 -0.04 16 37 H 0.16 0.60 8.06 -52.49 -0.42 0.17 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.09 0.54 4.67 -51.93 -0.24 0.30 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.08 0.95 6.51 -51.93 -0.34 0.61 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 47 H 0.02 0.41 6.54 -51.93 -0.34 0.07 16 48 H 0.38 10.49 7.67 -40.82 -0.31 10.17 16 49 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 50 H 0.09 1.35 7.01 -51.92 -0.36 0.99 16 51 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 405.99 15.07 6.12 6.12 Total: -1.00 -35.85 405.99 -10.08 -45.93 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -8.09 Total: 5.58 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -2.26 Total: -2.24 kcal Atomic # 7 Polarization: -59.84 SS G_CDS: -0.24 Total: -60.08 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: -0.59 Total: -13.09 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.85 -10.08 -45.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568073040.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.983 kcal (2) G-P(sol) polarization free energy of solvation -35.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds