Wall clock time and date at job start Wed Apr 1 2020 04:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47486 * 2 1 4 4 O 1.42906 * 109.46996 * 239.99405 * 2 1 3 5 5 C 1.35674 * 116.99340 * 90.00458 * 4 2 1 6 6 C 1.38924 * 119.68434 * 179.97438 * 5 4 2 7 7 C 1.38372 * 119.11631 * 179.97438 * 6 5 4 8 8 C 1.38833 * 118.48310 * 359.97438 * 7 6 5 9 9 C 1.38050 * 119.29018 * 0.02562 * 8 7 6 10 10 N 1.31960 * 120.82972 * 359.73931 * 9 8 7 11 11 C 1.50708 * 109.47001 * 120.00081 * 2 1 3 12 12 O 1.21283 * 120.00057 * 114.99439 * 11 2 1 13 13 N 1.34770 * 119.99673 * 294.99755 * 11 2 1 14 14 C 1.46927 * 120.63304 * 0.02562 * 13 11 2 15 15 C 1.53196 * 108.77413 * 233.58546 * 14 13 11 16 16 C 1.53031 * 109.31477 * 305.36304 * 15 14 13 17 17 C 1.53046 * 109.53726 * 61.36734 * 16 15 14 18 18 H 1.08990 * 109.49711 * 58.58414 * 17 16 15 19 19 C 1.52997 * 109.49842 * 178.68561 * 17 16 15 20 20 C 1.53007 * 109.46916 * 294.99868 * 19 17 16 21 21 N 1.46500 * 109.47175 * 180.02562 * 20 19 17 22 22 C 1.36936 * 120.00144 * 179.97438 * 21 20 19 23 23 H 1.08003 * 119.99908 * 359.97438 * 22 21 20 24 24 C 1.38811 * 120.00228 * 180.02562 * 22 21 20 25 25 N 1.31620 * 119.99624 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00210 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46927 * 359.97438 * 26 24 22 28 28 H 1.48509 * 109.46924 * 119.99583 * 26 24 22 29 29 H 1.48490 * 109.47342 * 239.99870 * 26 24 22 30 30 C 1.46923 * 120.63141 * 179.97438 * 13 11 2 31 31 H 1.09003 * 109.47460 * 300.00484 * 1 2 3 32 32 H 1.09000 * 109.47480 * 60.00202 * 1 2 3 33 33 H 1.09000 * 109.47578 * 180.02562 * 1 2 3 34 34 H 1.08007 * 120.43739 * 359.97438 * 6 5 4 35 35 H 1.08004 * 120.75956 * 180.02562 * 7 6 5 36 36 H 1.07998 * 120.35386 * 180.02562 * 8 7 6 37 37 H 1.07993 * 119.58091 * 180.02562 * 9 8 7 38 38 H 1.08993 * 109.58956 * 113.79989 * 14 13 11 39 39 H 1.08999 * 109.70338 * 353.44355 * 14 13 11 40 40 H 1.09004 * 109.49841 * 185.40709 * 15 14 13 41 41 H 1.08998 * 109.52227 * 65.33696 * 15 14 13 42 42 H 1.08995 * 109.46212 * 301.34533 * 16 15 14 43 43 H 1.09006 * 109.46201 * 181.38399 * 16 15 14 44 44 H 1.09000 * 109.47293 * 54.99131 * 19 17 16 45 45 H 1.08999 * 109.47661 * 175.00128 * 19 17 16 46 46 H 1.09000 * 109.47221 * 300.00037 * 20 19 17 47 47 H 1.08999 * 109.47259 * 60.00265 * 20 19 17 48 48 H 0.97002 * 119.99901 * 0.02562 * 21 20 19 49 49 H 0.97009 * 119.99924 * 180.02562 * 25 24 22 50 50 H 1.09009 * 109.58590 * 6.62804 * 30 13 11 51 51 H 1.08995 * 109.59117 * 246.20038 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6738 -1.1668 5 6 2.2116 0.0828 -2.2741 6 6 2.6747 -0.5149 -3.4395 7 6 2.8795 0.2677 -4.5621 8 6 2.6120 1.6275 -4.4790 9 6 2.1538 2.1541 -3.2880 10 7 1.9638 1.3812 -2.2355 11 6 2.0323 -0.7105 1.2305 12 8 2.6528 -1.7468 1.1216 13 7 1.7918 -0.1942 2.4520 14 6 1.0410 1.0600 2.6001 15 6 1.8682 2.0329 3.4463 16 6 2.2391 1.3623 4.7710 17 6 3.0885 0.1194 4.4952 18 1 3.9856 0.4062 3.9467 19 6 3.4862 -0.5319 5.8213 20 6 4.3986 0.4165 6.6018 21 7 4.7800 -0.2073 7.8713 22 6 5.5996 0.4592 8.7427 23 1 5.9652 1.4445 8.4938 24 6 5.9614 -0.1321 9.9453 25 7 5.5162 -1.3331 10.2483 26 14 7.0800 0.7767 11.1337 27 1 7.4396 2.0991 10.5619 28 1 6.3753 0.9709 12.4265 29 1 8.3145 -0.0176 11.3572 30 6 2.2745 -0.8754 3.6609 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 2.8721 -1.5764 -3.4689 35 1 3.2385 -0.1694 -5.4822 36 1 2.7609 2.2664 -5.3369 37 1 1.9439 3.2112 -3.2183 38 1 0.0911 0.8609 3.0961 39 1 0.8562 1.4958 1.6182 40 1 1.2832 2.9310 3.6445 41 1 2.7769 2.3022 2.9079 42 1 1.3303 1.0715 5.2978 43 1 2.8070 2.0611 5.3853 44 1 2.5908 -0.7388 6.4074 45 1 4.0150 -1.4643 5.6241 46 1 5.2940 0.6236 6.0157 47 1 3.8699 1.3490 6.7992 48 1 4.4525 -1.0927 8.0943 49 1 5.7687 -1.7462 11.0890 50 1 2.9059 -1.7179 3.3782 51 1 1.4251 -1.2321 4.2433 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568073040.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:31 Heat of formation + Delta-G solvation = -49.492943 kcal Electronic energy + Delta-G solvation = -30198.034928 eV Core-core repulsion = 26097.041973 eV Total energy + Delta-G solvation = -4100.992955 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.01642 -41.18244 -39.37894 -38.48562 -37.00203 -35.27595 -33.59182 -33.38553 -32.97063 -32.27189 -30.98953 -29.07296 -27.10007 -25.94292 -25.45029 -24.49367 -23.88055 -23.45414 -22.67602 -21.22947 -20.29842 -19.64799 -19.14472 -18.25735 -17.75056 -17.04649 -16.85768 -16.78405 -16.68657 -16.23397 -15.93164 -15.64448 -15.47194 -15.35842 -15.14740 -14.99272 -14.63856 -14.58188 -14.14495 -14.11184 -13.99529 -13.87255 -13.51719 -13.26765 -12.99461 -12.92153 -12.84686 -12.78534 -12.47289 -12.38303 -12.23288 -12.07903 -11.97444 -11.81786 -11.69230 -11.54009 -11.29209 -10.94202 -10.91989 -10.80752 -10.59628 -9.75021 -9.50750 -9.01587 -7.97167 -5.26607 0.19613 0.31430 1.34856 1.39749 1.45816 1.47363 1.57491 2.29170 2.54683 2.81820 3.22729 3.28701 3.36372 3.66791 3.74411 3.80922 3.86708 3.90818 4.03012 4.04501 4.10076 4.11705 4.22140 4.32595 4.34472 4.38892 4.47072 4.52879 4.59770 4.64593 4.66778 4.75552 4.79763 4.80878 4.83517 4.86579 4.99147 5.04919 5.07908 5.12929 5.23235 5.29296 5.31742 5.40673 5.43322 5.47507 5.51504 5.53717 6.12714 6.25449 6.27732 6.83050 6.96680 7.31000 8.07463 8.30584 9.26740 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020589 B = 0.001743 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.624718 B =16056.191393 C =16217.795789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.080 3.920 3 H 0.122 0.878 4 O -0.306 6.306 5 C 0.293 3.707 6 C -0.208 4.208 7 C -0.037 4.037 8 C -0.204 4.204 9 C 0.128 3.872 10 N -0.558 5.558 11 C 0.509 3.491 12 O -0.576 6.576 13 N -0.598 5.598 14 C 0.092 3.908 15 C -0.129 4.129 16 C -0.117 4.117 17 C -0.084 4.084 18 H 0.059 0.941 19 C -0.107 4.107 20 C 0.154 3.846 21 N -0.749 5.749 22 C -0.247 4.247 23 H 0.076 0.924 24 C -0.078 4.078 25 N -0.970 5.970 26 Si 0.977 3.023 27 H -0.265 1.265 28 H -0.290 1.290 29 H -0.294 1.294 30 C 0.121 3.879 31 H 0.109 0.891 32 H 0.081 0.919 33 H 0.059 0.941 34 H 0.140 0.860 35 H 0.171 0.829 36 H 0.171 0.829 37 H 0.189 0.811 38 H 0.099 0.901 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.058 0.942 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.050 0.950 46 H 0.009 0.991 47 H 0.032 0.968 48 H 0.373 0.627 49 H 0.252 0.748 50 H 0.066 0.934 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.262 10.713 -33.155 38.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.020 3.980 3 H 0.140 0.860 4 O -0.213 6.213 5 C 0.115 3.885 6 C -0.228 4.228 7 C -0.063 4.063 8 C -0.224 4.224 9 C -0.027 4.027 10 N -0.282 5.282 11 C 0.297 3.703 12 O -0.456 6.456 13 N -0.331 5.331 14 C -0.029 4.029 15 C -0.167 4.167 16 C -0.154 4.154 17 C -0.103 4.103 18 H 0.078 0.922 19 C -0.146 4.146 20 C 0.028 3.972 21 N -0.392 5.392 22 C -0.379 4.379 23 H 0.094 0.906 24 C -0.271 4.271 25 N -0.621 5.621 26 Si 0.805 3.195 27 H -0.190 1.190 28 H -0.217 1.217 29 H -0.221 1.221 30 C -0.002 4.002 31 H 0.127 0.873 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.158 0.842 35 H 0.189 0.811 36 H 0.188 0.812 37 H 0.206 0.794 38 H 0.117 0.883 39 H 0.127 0.873 40 H 0.124 0.876 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.069 0.931 46 H 0.026 0.974 47 H 0.050 0.950 48 H 0.205 0.795 49 H 0.060 0.940 50 H 0.085 0.915 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.123 10.402 -32.348 37.193 hybrid contribution 1.194 -0.791 0.542 1.532 sum -13.929 9.611 -31.806 36.028 Atomic orbital electron populations 1.22323 0.90230 1.03766 1.05594 1.22085 0.97240 0.97355 0.81279 0.86046 1.86345 1.80652 1.35798 1.18524 1.20149 0.93160 0.88186 0.87015 1.21344 1.06757 1.02819 0.91912 1.21852 0.92886 0.93752 0.97779 1.22424 1.03136 0.96285 1.00573 1.23053 0.92139 1.00303 0.87177 1.67213 1.22554 1.04342 1.34062 1.20795 0.79213 0.84959 0.85302 1.90707 1.42321 1.25756 1.86776 1.48076 1.54964 1.25582 1.04493 1.22372 0.95324 0.82397 1.02784 1.21926 1.00743 0.98836 0.95217 1.21645 0.99952 0.95854 0.97967 1.21308 0.98387 0.96220 0.94431 0.92248 1.21553 0.99402 0.98185 0.95429 1.20820 0.95192 0.95424 0.85744 1.42641 1.58550 1.19640 1.18367 1.19697 1.20807 0.99593 0.97802 0.90640 1.25634 1.03252 0.97863 1.00307 1.69837 1.50886 1.16558 1.24825 0.85026 0.77848 0.77986 0.78611 1.18957 1.21693 1.22075 1.21620 0.98898 0.94989 0.84664 0.87293 0.90020 0.92180 0.84168 0.81137 0.81159 0.79415 0.88282 0.87328 0.87594 0.92276 0.90550 0.91700 0.91215 0.93101 0.97351 0.95024 0.79542 0.93960 0.91504 0.89523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.10 71.98 0.66 -1.69 16 2 C 0.08 1.69 2.07 29.85 0.06 1.75 16 3 H 0.12 2.29 6.28 -2.39 -0.02 2.28 16 4 O -0.31 -7.98 9.30 -70.92 -0.66 -8.64 16 5 C 0.29 6.26 7.45 84.80 0.63 6.90 16 6 C -0.21 -3.54 10.04 22.47 0.23 -3.32 16 7 C -0.04 -0.38 10.17 22.44 0.23 -0.15 16 8 C -0.20 -1.62 10.11 22.37 0.23 -1.39 16 9 C 0.13 1.41 11.18 84.63 0.95 2.35 16 10 N -0.56 -9.87 8.65 -308.96 -2.67 -12.54 16 11 C 0.51 13.77 7.12 87.66 0.62 14.40 16 12 O -0.58 -21.47 15.92 15.95 0.25 -21.21 16 13 N -0.60 -12.98 2.97 -818.81 -2.43 -15.41 16 14 C 0.09 1.19 4.97 86.36 0.43 1.62 16 15 C -0.13 -1.84 6.08 30.67 0.19 -1.66 16 16 C -0.12 -2.38 4.95 30.62 0.15 -2.23 16 17 C -0.08 -2.17 2.34 -10.70 -0.03 -2.19 16 18 H 0.06 1.71 8.14 -2.39 -0.02 1.70 16 19 C -0.11 -3.53 4.80 30.60 0.15 -3.38 16 20 C 0.15 6.35 6.02 86.38 0.52 6.87 16 21 N -0.75 -39.76 5.60 -343.44 -1.92 -41.69 16 22 C -0.25 -14.28 9.99 84.03 0.84 -13.44 16 23 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 24 C -0.08 -4.63 5.50 84.86 0.47 -4.17 16 25 N -0.97 -60.91 13.06 21.65 0.28 -60.62 16 26 Si 0.98 47.05 29.55 68.60 2.03 49.07 16 27 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 28 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 29 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 30 C 0.12 3.02 5.72 86.38 0.49 3.52 16 31 H 0.11 0.99 5.41 -2.39 -0.01 0.97 16 32 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 35 H 0.17 0.60 8.06 -2.91 -0.02 0.58 16 36 H 0.17 0.19 8.06 -2.91 -0.02 0.16 16 37 H 0.19 0.79 8.06 -2.91 -0.02 0.77 16 38 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.11 0.98 4.67 -2.39 -0.01 0.97 16 40 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.06 1.50 6.51 -2.38 -0.02 1.48 16 44 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 47 H 0.03 1.25 6.54 -2.39 -0.02 1.24 16 48 H 0.37 20.98 7.67 -92.71 -0.71 20.27 16 49 H 0.25 15.21 8.31 -92.70 -0.77 14.43 16 50 H 0.07 2.06 7.01 -2.38 -0.02 2.04 16 51 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -81.16 405.99 1.90 -79.26 By element: Atomic # 1 Polarization: 27.78 SS G_CDS: 0.22 Total: 28.00 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: 6.81 Total: 3.79 kcal Atomic # 7 Polarization: -123.52 SS G_CDS: -6.75 Total: -130.27 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -0.41 Total: -29.86 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.07 kcal Total: -81.16 1.90 -79.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568073040.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.765 kcal (2) G-P(sol) polarization free energy of solvation -81.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds