Wall clock time and date at job start Wed Apr 1 2020 04:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47344 * 2 1 4 4 O 1.42902 * 109.47172 * 120.00550 * 2 1 3 5 5 C 1.35675 * 116.99542 * 269.99739 * 4 2 1 6 6 C 1.38925 * 119.67880 * 179.72980 * 5 4 2 7 7 C 1.38390 * 119.10712 * 179.75214 * 6 5 4 8 8 C 1.38830 * 118.48573 * 0.50936 * 7 6 5 9 9 C 1.38051 * 119.28669 * 359.72934 * 8 7 6 10 10 N 1.31962 * 120.83856 * 0.02562 * 9 8 7 11 11 C 1.50703 * 109.46736 * 240.00403 * 2 1 3 12 12 O 1.21285 * 119.99536 * 245.00026 * 11 2 1 13 13 N 1.34775 * 120.00081 * 65.00065 * 11 2 1 14 14 C 1.46920 * 120.63274 * 0.02562 * 13 11 2 15 15 C 1.53193 * 108.77550 * 126.36805 * 14 13 11 16 16 C 1.53040 * 109.31153 * 54.63854 * 15 14 13 17 17 C 1.53041 * 109.53567 * 298.63320 * 16 15 14 18 18 H 1.09002 * 109.49802 * 301.41484 * 17 16 15 19 19 C 1.53003 * 109.52102 * 181.33369 * 17 16 15 20 20 C 1.52994 * 109.47013 * 65.08232 * 19 17 16 21 21 N 1.46505 * 109.46942 * 179.97438 * 20 19 17 22 22 C 1.36939 * 119.99863 * 179.97438 * 21 20 19 23 23 H 1.07996 * 120.00288 * 359.97438 * 22 21 20 24 24 C 1.38816 * 119.99639 * 180.02562 * 22 21 20 25 25 N 1.31619 * 119.99756 * 179.97438 * 24 22 21 26 26 Si 1.86798 * 120.00153 * 359.97438 * 24 22 21 27 27 H 1.48502 * 109.47026 * 90.00119 * 26 24 22 28 28 H 1.48499 * 109.46967 * 210.00298 * 26 24 22 29 29 H 1.48497 * 109.47259 * 329.99871 * 26 24 22 30 30 C 1.46925 * 120.62902 * 179.97438 * 13 11 2 31 31 H 1.08996 * 109.47344 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46817 * 299.99517 * 1 2 3 33 33 H 1.09004 * 109.47325 * 59.99428 * 1 2 3 34 34 H 1.07991 * 120.45003 * 0.02562 * 6 5 4 35 35 H 1.07996 * 120.75310 * 180.23802 * 7 6 5 36 36 H 1.07994 * 120.35422 * 179.70712 * 8 7 6 37 37 H 1.08001 * 119.58169 * 180.02562 * 9 8 7 38 38 H 1.09004 * 109.58885 * 246.15735 * 14 13 11 39 39 H 1.09000 * 109.58663 * 6.43877 * 14 13 11 40 40 H 1.09005 * 109.49580 * 174.58602 * 15 14 13 41 41 H 1.08994 * 109.49562 * 294.64929 * 15 14 13 42 42 H 1.08997 * 109.46043 * 178.61049 * 16 15 14 43 43 H 1.09004 * 109.46170 * 58.65203 * 16 15 14 44 44 H 1.08999 * 109.46888 * 185.08224 * 19 17 16 45 45 H 1.09002 * 109.47342 * 305.07507 * 19 17 16 46 46 H 1.08999 * 109.47287 * 299.99748 * 20 19 17 47 47 H 1.09002 * 109.47679 * 60.00026 * 20 19 17 48 48 H 0.97006 * 120.00140 * 359.97438 * 21 20 19 49 49 H 0.96999 * 120.00332 * 180.02562 * 25 24 22 50 50 H 1.09000 * 109.58550 * 113.84297 * 30 13 11 51 51 H 1.09007 * 109.70721 * 353.48741 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6738 1.1667 5 6 2.2117 0.0828 2.2741 6 6 2.6689 -0.5161 3.4412 7 6 2.8792 0.2676 4.5623 8 6 2.6133 1.6276 4.4788 9 6 2.1559 2.1544 3.2875 10 7 1.9696 1.3823 2.2337 11 6 2.0322 -0.7104 -1.2306 12 8 2.6529 -1.7467 -1.1216 13 7 1.7918 -0.1940 -2.4521 14 6 1.0420 1.0607 -2.6000 15 6 1.8701 2.0332 -3.4458 16 6 2.2409 1.3626 -4.7705 17 6 3.0892 0.1190 -4.4948 18 1 3.9865 0.4051 -3.9459 19 6 3.4876 -0.5324 -5.8207 20 6 4.4028 0.4145 -6.5994 21 7 4.7847 -0.2095 -7.8687 22 6 5.6060 0.4562 -8.7391 23 1 5.9718 1.4413 -8.4902 24 6 5.9674 -0.1349 -9.9420 25 7 6.7563 0.5051 -10.7789 26 14 5.3340 -1.8386 -10.3730 27 1 4.0473 -1.7179 -11.1046 28 1 6.3276 -2.5338 -11.2303 29 1 5.1238 -2.6184 -9.1269 30 6 2.2755 -0.8747 -3.6609 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 2.8619 -1.5782 3.4721 35 1 3.2379 -0.1696 5.4824 36 1 2.7623 2.2665 5.3366 37 1 1.9478 3.2118 3.2171 38 1 0.0920 0.8624 -3.0964 39 1 0.8571 1.4940 -1.6171 40 1 1.2857 2.9317 -3.6439 41 1 2.7785 2.3016 -2.9065 42 1 2.8093 2.0612 -5.3845 43 1 1.3320 1.0726 -5.2977 44 1 4.0143 -1.4660 -5.6230 45 1 2.5926 -0.7376 -6.4081 46 1 3.8761 1.3481 -6.7971 47 1 5.2979 0.6197 -6.0121 48 1 4.4558 -1.0942 -8.0926 49 1 7.0086 0.0923 -11.6196 50 1 1.4263 -1.2313 -4.2440 51 1 2.9061 -1.7184 -3.3803 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568073041.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:35 Heat of formation + Delta-G solvation = -21.765546 kcal Electronic energy + Delta-G solvation = -30264.604585 eV Core-core repulsion = 26164.813980 eV Total energy + Delta-G solvation = -4099.790605 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.29407 -40.43070 -38.58956 -37.56221 -35.61248 -33.89781 -32.94243 -32.36740 -32.09477 -31.02900 -30.38634 -27.92820 -26.28928 -24.88782 -24.18772 -23.85129 -22.97987 -22.23115 -21.31200 -20.22653 -19.47294 -18.97335 -17.58203 -17.42159 -17.02335 -16.38716 -16.17876 -16.01494 -15.44525 -14.95020 -14.87620 -14.77883 -14.50636 -14.34997 -13.95961 -13.89386 -13.65098 -13.54164 -13.42095 -13.18762 -12.94079 -12.77371 -12.68916 -12.45430 -12.30189 -12.04067 -11.64861 -11.55412 -11.38783 -11.14488 -11.03938 -10.80533 -10.64174 -10.50893 -10.40056 -10.27184 -10.10272 -10.07238 -9.84475 -9.56977 -8.94498 -8.89134 -8.80965 -7.19593 -5.74508 -3.09629 0.70920 0.81473 2.13150 2.31500 3.02471 3.33798 3.39735 3.42867 3.47284 3.80489 4.02476 4.40957 4.44764 4.49406 4.58259 4.60829 4.61700 4.68085 4.72794 4.75742 4.77396 4.81577 5.05555 5.09502 5.15852 5.24480 5.26687 5.33781 5.45316 5.49962 5.50823 5.56916 5.63622 5.65289 5.67298 5.74740 5.83184 5.85655 5.94409 5.98980 6.04418 6.16161 6.23564 6.27682 6.40370 6.77877 6.78654 6.82314 7.09380 7.38223 7.88389 8.02234 8.44751 9.24279 9.96873 10.17002 11.43994 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021000 B = 0.001810 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.981692 B =15467.169884 C =15492.975787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.074 3.926 3 H 0.115 0.885 4 O -0.276 6.276 5 C 0.324 3.676 6 C -0.188 4.188 7 C -0.040 4.040 8 C -0.214 4.214 9 C 0.140 3.860 10 N -0.543 5.543 11 C 0.517 3.483 12 O -0.521 6.521 13 N -0.604 5.604 14 C 0.097 3.903 15 C -0.136 4.136 16 C -0.119 4.119 17 C -0.095 4.095 18 H 0.076 0.924 19 C -0.124 4.124 20 C 0.158 3.842 21 N -0.758 5.758 22 C -0.243 4.243 23 H 0.089 0.911 24 C 0.002 3.998 25 N -0.935 5.935 26 Si 0.886 3.114 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.277 1.277 30 C 0.117 3.883 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.138 0.862 37 H 0.160 0.840 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.029 0.971 47 H 0.024 0.976 48 H 0.360 0.640 49 H 0.259 0.741 50 H 0.070 0.930 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.842 3.668 32.809 37.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.014 3.986 3 H 0.132 0.868 4 O -0.182 6.182 5 C 0.145 3.855 6 C -0.209 4.209 7 C -0.065 4.065 8 C -0.234 4.234 9 C -0.015 4.015 10 N -0.267 5.267 11 C 0.303 3.697 12 O -0.396 6.396 13 N -0.339 5.339 14 C -0.025 4.025 15 C -0.174 4.174 16 C -0.156 4.156 17 C -0.115 4.115 18 H 0.094 0.906 19 C -0.162 4.162 20 C 0.031 3.969 21 N -0.403 5.403 22 C -0.373 4.373 23 H 0.107 0.893 24 C -0.193 4.193 25 N -0.583 5.583 26 Si 0.716 3.284 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.203 1.203 30 C -0.004 4.004 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.161 0.839 35 H 0.160 0.840 36 H 0.155 0.845 37 H 0.178 0.822 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.047 0.953 47 H 0.042 0.958 48 H 0.193 0.807 49 H 0.069 0.931 50 H 0.089 0.911 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.628 3.336 31.942 36.165 hybrid contribution -0.095 -1.273 0.218 1.295 sum -16.723 2.063 32.161 36.307 Atomic orbital electron populations 1.22349 0.92382 1.03969 1.04168 1.22053 0.95799 0.97966 0.82761 0.86785 1.86390 1.79810 1.34365 1.17601 1.19903 0.91198 0.87420 0.86999 1.21121 1.06039 1.02343 0.91363 1.21449 0.93913 0.93449 0.97705 1.22004 1.05172 0.96244 1.00026 1.22435 0.92569 0.99214 0.87291 1.67248 1.22031 1.04722 1.32739 1.20182 0.80005 0.85451 0.84065 1.90741 1.39719 1.23226 1.85931 1.47983 1.55587 1.24821 1.05499 1.22052 0.95033 0.84114 1.01311 1.21950 1.00547 0.97996 0.96910 1.21666 1.00239 0.97230 0.96489 1.21440 0.98505 0.95290 0.96290 0.90598 1.21750 1.00273 0.99577 0.94615 1.20647 0.95110 0.94448 0.86683 1.42737 1.59851 1.18935 1.18809 1.19072 1.20713 1.00789 0.96752 0.89285 1.24686 0.99691 0.98093 0.96860 1.69705 1.39620 1.38085 1.10922 0.86522 0.78356 0.85615 0.77908 1.21099 1.21734 1.20309 1.21749 0.98761 0.95821 0.84115 0.91136 0.90712 0.89655 0.83896 0.84044 0.84460 0.82245 0.90740 0.89460 0.90404 0.91355 0.90352 0.91600 0.91721 0.91747 0.95316 0.95801 0.80715 0.93099 0.91138 0.88836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 9.10 37.16 0.34 -0.96 16 2 C 0.07 0.76 2.07 -27.88 -0.06 0.70 16 3 H 0.11 1.09 6.27 -51.93 -0.33 0.76 16 4 O -0.28 -3.35 9.30 -38.59 -0.36 -3.71 16 5 C 0.32 3.34 7.45 -17.12 -0.13 3.21 16 6 C -0.19 -1.55 10.04 -39.27 -0.39 -1.95 16 7 C -0.04 -0.23 10.17 -39.31 -0.40 -0.63 16 8 C -0.21 -1.13 10.11 -39.43 -0.40 -1.53 16 9 C 0.14 0.91 11.18 -17.56 -0.20 0.71 16 10 N -0.54 -4.98 8.65 -13.33 -0.12 -5.10 16 11 C 0.52 6.58 7.12 -10.98 -0.08 6.51 16 12 O -0.52 -8.84 15.92 -14.31 -0.23 -9.07 16 13 N -0.60 -6.43 2.97 -172.80 -0.51 -6.95 16 14 C 0.10 0.73 4.98 -3.71 -0.02 0.71 16 15 C -0.14 -1.10 6.08 -26.61 -0.16 -1.26 16 16 C -0.12 -1.24 4.96 -26.69 -0.13 -1.37 16 17 C -0.10 -1.17 2.33 -90.52 -0.21 -1.38 16 18 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 19 C -0.12 -1.85 4.80 -26.73 -0.13 -1.98 16 20 C 0.16 3.06 6.02 -4.04 -0.02 3.03 16 21 N -0.76 -18.47 5.41 -59.91 -0.32 -18.79 16 22 C -0.24 -7.06 10.47 -15.06 -0.16 -7.22 16 23 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 24 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 25 N -0.94 -29.84 13.97 55.49 0.78 -29.06 16 26 Si 0.89 22.54 27.74 -169.99 -4.71 17.82 16 27 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 29 H -0.28 -6.66 6.52 56.52 0.37 -6.29 16 30 C 0.12 1.37 5.71 -3.74 -0.02 1.35 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.48 5.41 -51.93 -0.28 0.20 16 34 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.14 0.43 8.06 -52.49 -0.42 0.00 16 36 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 37 H 0.16 0.58 8.06 -52.49 -0.42 0.15 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.09 0.51 4.66 -51.93 -0.24 0.27 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.92 6.51 -51.93 -0.34 0.58 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 46 H 0.03 0.55 6.54 -51.93 -0.34 0.21 16 47 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.36 8.55 5.53 -40.82 -0.23 8.33 16 49 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 50 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 51 H 0.09 1.27 7.01 -51.92 -0.36 0.91 16 LS Contribution 402.88 15.07 6.07 6.07 Total: -1.00 -36.57 402.88 -9.72 -46.30 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -8.05 Total: 4.56 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -2.27 Total: -2.08 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: -0.18 Total: -59.90 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -0.59 Total: -12.77 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.71 Total: 17.82 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.57 -9.72 -46.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568073041.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.531 kcal (2) G-P(sol) polarization free energy of solvation -36.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds