Wall clock time and date at job start Wed Apr 1 2020 04:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47344 * 2 1 4 4 O 1.42902 * 109.47172 * 120.00550 * 2 1 3 5 5 C 1.35675 * 116.99542 * 269.99739 * 4 2 1 6 6 C 1.38925 * 119.67880 * 179.72980 * 5 4 2 7 7 C 1.38390 * 119.10712 * 179.75214 * 6 5 4 8 8 C 1.38830 * 118.48573 * 0.50936 * 7 6 5 9 9 C 1.38051 * 119.28669 * 359.72934 * 8 7 6 10 10 N 1.31962 * 120.83856 * 0.02562 * 9 8 7 11 11 C 1.50703 * 109.46736 * 240.00403 * 2 1 3 12 12 O 1.21285 * 119.99536 * 245.00026 * 11 2 1 13 13 N 1.34775 * 120.00081 * 65.00065 * 11 2 1 14 14 C 1.46920 * 120.63274 * 0.02562 * 13 11 2 15 15 C 1.53193 * 108.77550 * 126.36805 * 14 13 11 16 16 C 1.53040 * 109.31153 * 54.63854 * 15 14 13 17 17 C 1.53041 * 109.53567 * 298.63320 * 16 15 14 18 18 H 1.09002 * 109.49802 * 301.41484 * 17 16 15 19 19 C 1.53003 * 109.52102 * 181.33369 * 17 16 15 20 20 C 1.52994 * 109.47013 * 65.08232 * 19 17 16 21 21 N 1.46505 * 109.46942 * 179.97438 * 20 19 17 22 22 C 1.36939 * 119.99863 * 179.97438 * 21 20 19 23 23 H 1.07996 * 120.00288 * 359.97438 * 22 21 20 24 24 C 1.38816 * 119.99639 * 180.02562 * 22 21 20 25 25 N 1.31619 * 119.99756 * 179.97438 * 24 22 21 26 26 Si 1.86798 * 120.00153 * 359.97438 * 24 22 21 27 27 H 1.48502 * 109.47026 * 90.00119 * 26 24 22 28 28 H 1.48499 * 109.46967 * 210.00298 * 26 24 22 29 29 H 1.48497 * 109.47259 * 329.99871 * 26 24 22 30 30 C 1.46925 * 120.62902 * 179.97438 * 13 11 2 31 31 H 1.08996 * 109.47344 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46817 * 299.99517 * 1 2 3 33 33 H 1.09004 * 109.47325 * 59.99428 * 1 2 3 34 34 H 1.07991 * 120.45003 * 0.02562 * 6 5 4 35 35 H 1.07996 * 120.75310 * 180.23802 * 7 6 5 36 36 H 1.07994 * 120.35422 * 179.70712 * 8 7 6 37 37 H 1.08001 * 119.58169 * 180.02562 * 9 8 7 38 38 H 1.09004 * 109.58885 * 246.15735 * 14 13 11 39 39 H 1.09000 * 109.58663 * 6.43877 * 14 13 11 40 40 H 1.09005 * 109.49580 * 174.58602 * 15 14 13 41 41 H 1.08994 * 109.49562 * 294.64929 * 15 14 13 42 42 H 1.08997 * 109.46043 * 178.61049 * 16 15 14 43 43 H 1.09004 * 109.46170 * 58.65203 * 16 15 14 44 44 H 1.08999 * 109.46888 * 185.08224 * 19 17 16 45 45 H 1.09002 * 109.47342 * 305.07507 * 19 17 16 46 46 H 1.08999 * 109.47287 * 299.99748 * 20 19 17 47 47 H 1.09002 * 109.47679 * 60.00026 * 20 19 17 48 48 H 0.97006 * 120.00140 * 359.97438 * 21 20 19 49 49 H 0.96999 * 120.00332 * 180.02562 * 25 24 22 50 50 H 1.09000 * 109.58550 * 113.84297 * 30 13 11 51 51 H 1.09007 * 109.70721 * 353.48741 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6738 1.1667 5 6 2.2117 0.0828 2.2741 6 6 2.6689 -0.5161 3.4412 7 6 2.8792 0.2676 4.5623 8 6 2.6133 1.6276 4.4788 9 6 2.1559 2.1544 3.2875 10 7 1.9696 1.3823 2.2337 11 6 2.0322 -0.7104 -1.2306 12 8 2.6529 -1.7467 -1.1216 13 7 1.7918 -0.1940 -2.4521 14 6 1.0420 1.0607 -2.6000 15 6 1.8701 2.0332 -3.4458 16 6 2.2409 1.3626 -4.7705 17 6 3.0892 0.1190 -4.4948 18 1 3.9865 0.4051 -3.9459 19 6 3.4876 -0.5324 -5.8207 20 6 4.4028 0.4145 -6.5994 21 7 4.7847 -0.2095 -7.8687 22 6 5.6060 0.4562 -8.7391 23 1 5.9718 1.4413 -8.4902 24 6 5.9674 -0.1349 -9.9420 25 7 6.7563 0.5051 -10.7789 26 14 5.3340 -1.8386 -10.3730 27 1 4.0473 -1.7179 -11.1046 28 1 6.3276 -2.5338 -11.2303 29 1 5.1238 -2.6184 -9.1269 30 6 2.2755 -0.8747 -3.6609 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 2.8619 -1.5782 3.4721 35 1 3.2379 -0.1696 5.4824 36 1 2.7623 2.2665 5.3366 37 1 1.9478 3.2118 3.2171 38 1 0.0920 0.8624 -3.0964 39 1 0.8571 1.4940 -1.6171 40 1 1.2857 2.9317 -3.6439 41 1 2.7785 2.3016 -2.9065 42 1 2.8093 2.0612 -5.3845 43 1 1.3320 1.0726 -5.2977 44 1 4.0143 -1.4660 -5.6230 45 1 2.5926 -0.7376 -6.4081 46 1 3.8761 1.3481 -6.7971 47 1 5.2979 0.6197 -6.0121 48 1 4.4558 -1.0942 -8.0926 49 1 7.0086 0.0923 -11.6196 50 1 1.4263 -1.2313 -4.2440 51 1 2.9061 -1.7184 -3.3803 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568073041.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:34 Heat of formation + Delta-G solvation = -46.416232 kcal Electronic energy + Delta-G solvation = -30265.673519 eV Core-core repulsion = 26164.813980 eV Total energy + Delta-G solvation = -4100.859539 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.01850 -41.18549 -39.39101 -38.49792 -37.13045 -35.29496 -33.69159 -33.42892 -32.98162 -32.52793 -31.01706 -29.35227 -27.09903 -25.83945 -25.39467 -24.48340 -23.79296 -23.38112 -22.73890 -21.30236 -20.30291 -19.65758 -19.60481 -18.26651 -17.75660 -17.05403 -16.83568 -16.75254 -16.69441 -16.30311 -15.98155 -15.79494 -15.47716 -15.27267 -15.18716 -14.89731 -14.67003 -14.60877 -14.24777 -14.15980 -14.00541 -13.88653 -13.68245 -13.41476 -13.08694 -12.98791 -12.87759 -12.79694 -12.46864 -12.33249 -12.22697 -12.14049 -11.96988 -11.83216 -11.68264 -11.57271 -11.30194 -10.96172 -10.92607 -10.81184 -10.60153 -9.75079 -9.51185 -9.30904 -8.04915 -5.38765 0.19109 0.30977 1.34483 1.36823 1.39979 1.40540 1.47990 2.29075 2.46934 2.81315 3.22684 3.26198 3.28384 3.51961 3.72760 3.80634 3.85306 3.89197 3.96576 4.04153 4.04422 4.11116 4.21675 4.29879 4.34096 4.37907 4.43136 4.50163 4.58022 4.63081 4.66432 4.73160 4.79293 4.80476 4.82554 4.86866 4.97689 5.04490 5.07502 5.12660 5.21435 5.28871 5.29730 5.40725 5.42418 5.50395 5.53340 5.73255 6.12218 6.19251 6.27115 6.82556 6.96510 7.05804 7.82204 8.01753 9.16557 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021000 B = 0.001810 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.981692 B =15467.169884 C =15492.975787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.079 3.921 3 H 0.121 0.879 4 O -0.306 6.306 5 C 0.293 3.707 6 C -0.207 4.207 7 C -0.037 4.037 8 C -0.205 4.205 9 C 0.128 3.872 10 N -0.558 5.558 11 C 0.510 3.490 12 O -0.575 6.575 13 N -0.598 5.598 14 C 0.093 3.907 15 C -0.130 4.130 16 C -0.118 4.118 17 C -0.086 4.086 18 H 0.058 0.942 19 C -0.112 4.112 20 C 0.155 3.845 21 N -0.761 5.761 22 C -0.239 4.239 23 H 0.055 0.945 24 C -0.066 4.066 25 N -0.983 5.983 26 Si 0.959 3.041 27 H -0.273 1.273 28 H -0.295 1.295 29 H -0.254 1.254 30 C 0.120 3.880 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.141 0.859 35 H 0.171 0.829 36 H 0.171 0.829 37 H 0.189 0.811 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.079 0.921 44 H 0.058 0.942 45 H 0.078 0.922 46 H 0.035 0.965 47 H 0.011 0.989 48 H 0.366 0.634 49 H 0.259 0.741 50 H 0.090 0.910 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.517 4.221 34.824 40.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.019 3.981 3 H 0.138 0.862 4 O -0.213 6.213 5 C 0.115 3.885 6 C -0.228 4.228 7 C -0.063 4.063 8 C -0.224 4.224 9 C -0.027 4.027 10 N -0.282 5.282 11 C 0.298 3.702 12 O -0.455 6.455 13 N -0.331 5.331 14 C -0.028 4.028 15 C -0.168 4.168 16 C -0.155 4.155 17 C -0.106 4.106 18 H 0.076 0.924 19 C -0.150 4.150 20 C 0.030 3.970 21 N -0.407 5.407 22 C -0.370 4.370 23 H 0.073 0.927 24 C -0.257 4.257 25 N -0.634 5.634 26 Si 0.786 3.214 27 H -0.199 1.199 28 H -0.222 1.222 29 H -0.178 1.178 30 C -0.002 4.002 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.127 0.873 34 H 0.159 0.841 35 H 0.189 0.811 36 H 0.188 0.812 37 H 0.205 0.795 38 H 0.118 0.882 39 H 0.125 0.875 40 H 0.122 0.878 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.098 0.902 44 H 0.077 0.923 45 H 0.097 0.903 46 H 0.053 0.947 47 H 0.029 0.971 48 H 0.199 0.801 49 H 0.067 0.933 50 H 0.108 0.892 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.349 3.929 34.000 39.317 hybrid contribution 0.806 -1.276 -0.294 1.537 sum -18.544 2.653 33.706 38.561 Atomic orbital electron populations 1.22322 0.90234 1.03778 1.05561 1.22092 0.97248 0.97369 0.81361 0.86157 1.86342 1.80651 1.35773 1.18521 1.20150 0.93182 0.88157 0.87017 1.21346 1.06768 1.02801 0.91881 1.21856 0.92864 0.93734 0.97824 1.22422 1.03126 0.96311 1.00569 1.23049 0.92161 1.00311 0.87170 1.67217 1.22562 1.04365 1.34056 1.20761 0.79204 0.84956 0.85287 1.90706 1.42270 1.25715 1.86769 1.48072 1.54977 1.25553 1.04542 1.22363 0.95344 0.82388 1.02703 1.21926 1.00673 0.98879 0.95364 1.21657 1.00099 0.95915 0.97867 1.21302 0.98416 0.96240 0.94615 0.92360 1.21620 0.99642 0.98279 0.95464 1.20815 0.95532 0.95661 0.85040 1.42767 1.59166 1.19103 1.19653 1.19056 1.20645 0.99746 0.97543 0.92742 1.25568 1.00407 1.02885 0.96860 1.69890 1.41585 1.40339 1.11560 0.85352 0.77725 0.80038 0.78332 1.19919 1.22177 1.17846 1.21615 0.99005 0.94945 0.84621 0.92114 0.90132 0.87276 0.84116 0.81136 0.81187 0.79464 0.88153 0.87513 0.87757 0.92471 0.91867 0.90201 0.92294 0.90301 0.94712 0.97062 0.80069 0.93270 0.89214 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.10 71.98 0.66 -1.56 16 2 C 0.08 1.61 2.07 29.85 0.06 1.67 16 3 H 0.12 2.21 6.27 -2.39 -0.01 2.20 16 4 O -0.31 -7.76 9.30 -70.93 -0.66 -8.42 16 5 C 0.29 6.13 7.45 84.79 0.63 6.76 16 6 C -0.21 -3.45 10.04 22.47 0.23 -3.22 16 7 C -0.04 -0.37 10.17 22.45 0.23 -0.14 16 8 C -0.20 -1.59 10.11 22.37 0.23 -1.36 16 9 C 0.13 1.39 11.18 84.63 0.95 2.33 16 10 N -0.56 -9.73 8.65 -308.95 -2.67 -12.40 16 11 C 0.51 13.15 7.12 87.66 0.62 13.77 16 12 O -0.58 -20.57 15.92 15.95 0.25 -20.31 16 13 N -0.60 -12.07 2.97 -819.00 -2.43 -14.51 16 14 C 0.09 1.10 4.98 86.36 0.43 1.53 16 15 C -0.13 -1.77 6.08 30.67 0.19 -1.58 16 16 C -0.12 -2.23 4.96 30.62 0.15 -2.08 16 17 C -0.09 -2.03 2.33 -10.73 -0.03 -2.06 16 18 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 19 C -0.11 -3.22 4.80 30.59 0.15 -3.08 16 20 C 0.16 5.99 6.02 86.38 0.52 6.51 16 21 N -0.76 -36.78 5.41 -343.45 -1.86 -38.64 16 22 C -0.24 -14.11 10.47 84.03 0.88 -13.23 16 23 H 0.05 3.51 8.06 -2.91 -0.02 3.49 16 24 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 25 N -0.98 -64.22 13.97 21.65 0.30 -63.92 16 26 Si 0.96 46.39 27.74 68.60 1.90 48.30 16 27 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 28 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 29 H -0.25 -11.19 6.52 99.48 0.65 -10.54 16 30 C 0.12 2.72 5.71 86.35 0.49 3.21 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.11 0.90 5.41 -2.39 -0.01 0.89 16 34 H 0.14 2.21 8.06 -2.92 -0.02 2.19 16 35 H 0.17 0.56 8.06 -2.91 -0.02 0.53 16 36 H 0.17 0.17 8.06 -2.91 -0.02 0.15 16 37 H 0.19 0.78 8.06 -2.91 -0.02 0.76 16 38 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 39 H 0.11 0.90 4.66 -2.39 -0.01 0.89 16 40 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 41 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.06 1.40 6.51 -2.39 -0.02 1.39 16 43 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 44 H 0.06 1.77 8.14 -2.39 -0.02 1.76 16 45 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.03 1.32 6.54 -2.39 -0.02 1.31 16 47 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 48 H 0.37 16.75 5.53 -92.70 -0.51 16.23 16 49 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 50 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 51 H 0.07 1.92 7.01 -2.38 -0.02 1.90 16 Total: -1.00 -83.70 402.88 2.05 -81.66 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: 0.36 Total: 24.25 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: 6.85 Total: 3.99 kcal Atomic # 7 Polarization: -122.80 SS G_CDS: -6.66 Total: -129.46 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -0.41 Total: -28.73 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 1.90 Total: 48.30 kcal Total: -83.70 2.05 -81.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568073041.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.241 kcal (2) G-P(sol) polarization free energy of solvation -83.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds