Wall clock time and date at job start Wed Apr 1 2020 04:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46751 * 2 1 4 4 O 1.42895 * 109.47326 * 240.00317 * 2 1 3 5 5 C 1.42899 * 114.00381 * 89.99586 * 4 2 1 6 6 C 1.50697 * 109.47722 * 179.97438 * 5 4 2 7 7 C 1.38650 * 120.78873 * 269.72730 * 6 5 4 8 8 C 1.38203 * 119.15964 * 179.79272 * 7 6 5 9 9 N 1.31873 * 120.76538 * 0.48735 * 8 7 6 10 10 C 1.31864 * 121.72500 * 359.73715 * 9 8 7 11 11 C 1.38205 * 120.76670 * 0.02562 * 10 9 8 12 12 C 1.50700 * 109.46975 * 120.00092 * 2 1 3 13 13 O 1.21282 * 119.99870 * 115.00398 * 12 2 1 14 14 N 1.34778 * 119.99872 * 295.00152 * 12 2 1 15 15 C 1.46925 * 120.62854 * 180.02562 * 14 12 2 16 16 C 1.53192 * 108.77417 * 126.37037 * 15 14 12 17 17 C 1.53036 * 109.31289 * 54.63817 * 16 15 14 18 18 C 1.53001 * 109.45946 * 178.62967 * 17 16 15 19 19 N 1.46496 * 109.46552 * 58.65105 * 17 16 15 20 20 C 1.36934 * 120.00548 * 179.97438 * 19 17 16 21 21 H 1.08004 * 119.99288 * 0.02562 * 20 19 17 22 22 C 1.38805 * 120.00389 * 180.02562 * 20 19 17 23 23 N 1.31624 * 120.00257 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99929 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47174 * 270.00277 * 24 22 20 26 26 H 1.48501 * 109.47062 * 30.00228 * 24 22 20 27 27 H 1.48499 * 109.46981 * 150.00382 * 24 22 20 28 28 C 1.53048 * 109.53715 * 298.63071 * 17 16 15 29 29 C 1.46928 * 120.63155 * 359.97438 * 14 12 2 30 30 H 1.09003 * 109.46960 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47517 * 299.99668 * 1 2 3 32 32 H 1.09003 * 109.47071 * 60.00382 * 1 2 3 33 33 H 1.09004 * 109.47283 * 300.00332 * 5 4 2 34 34 H 1.09005 * 109.47097 * 59.99816 * 5 4 2 35 35 H 1.07996 * 120.42112 * 359.97438 * 7 6 5 36 36 H 1.08000 * 119.61879 * 180.20001 * 8 7 6 37 37 H 1.07999 * 119.61855 * 180.02562 * 10 9 8 38 38 H 1.08000 * 120.42133 * 180.02562 * 11 10 9 39 39 H 1.08994 * 109.58631 * 6.58036 * 15 14 12 40 40 H 1.09000 * 109.58691 * 246.15998 * 15 14 12 41 41 H 1.08996 * 109.49780 * 294.68289 * 16 15 14 42 42 H 1.09005 * 109.52310 * 174.60414 * 16 15 14 43 43 H 1.09003 * 109.47162 * 300.01997 * 18 17 16 44 44 H 1.09002 * 109.47474 * 60.02292 * 18 17 16 45 45 H 1.09005 * 109.47258 * 180.02562 * 18 17 16 46 46 H 0.96999 * 119.99694 * 0.02562 * 19 17 16 47 47 H 0.97001 * 119.99885 * 179.97438 * 23 22 20 48 48 H 1.08994 * 109.49895 * 181.31762 * 28 17 16 49 49 H 1.09004 * 109.49676 * 301.41577 * 28 17 16 50 50 H 1.08994 * 109.58761 * 353.42094 * 29 14 12 51 51 H 1.09001 * 109.58280 * 113.84211 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6735 -1.1668 5 6 2.2001 0.1830 -2.2941 6 6 2.7015 -0.6280 -3.4610 7 6 4.0606 -0.8063 -3.6697 8 6 4.4831 -1.5600 -4.7483 9 7 3.6110 -2.0980 -5.5783 10 6 2.3116 -1.9456 -5.4134 11 6 1.8149 -1.2090 -4.3547 12 6 2.0323 -0.7104 1.2305 13 8 2.6530 -1.7467 1.1215 14 7 1.7918 -0.1942 2.4520 15 6 2.2756 -0.8750 3.6608 16 6 3.0895 0.1197 4.4945 17 6 2.2406 1.3627 4.7704 18 6 3.0383 2.3439 5.6317 19 7 1.0193 0.9724 5.4791 20 6 0.1004 1.9232 5.8348 21 1 0.2759 2.9610 5.5924 22 6 -1.0565 1.5534 6.5067 23 7 -1.9400 2.4674 6.8482 24 14 -1.3603 -0.2416 6.9251 25 1 -2.0962 -0.8919 5.8113 26 1 -0.0599 -0.9296 7.1275 27 1 -2.1662 -0.3303 8.1693 28 6 1.8691 2.0332 3.4457 29 6 1.0419 1.0606 2.6001 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.2538 0.6547 -2.5589 34 1 2.9319 0.9515 -2.0450 35 1 4.7798 -0.3641 -2.9963 36 1 5.5399 -1.7064 -4.9159 37 1 1.6275 -2.4016 -6.1138 38 1 0.7495 -1.0881 -4.2248 39 1 2.9068 -1.7173 3.3780 40 1 1.4265 -1.2317 4.2439 41 1 3.9865 0.4061 3.9455 42 1 3.3738 -0.3438 5.4393 43 1 3.3025 1.8670 6.5756 44 1 3.9470 2.6345 5.1046 45 1 2.4336 3.2292 5.8288 46 1 0.8619 0.0404 5.6970 47 1 -2.7487 2.2088 7.3174 48 1 1.2843 2.9313 3.6439 49 1 2.7777 2.3017 2.9065 50 1 0.8592 1.4952 1.6174 51 1 0.0920 0.8621 3.0964 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570381023.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:14 Heat of formation + Delta-G solvation = -20.598700 kcal Electronic energy + Delta-G solvation = -31261.277512 eV Core-core repulsion = 27161.537505 eV Total energy + Delta-G solvation = -4099.740007 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.60088 -40.29523 -38.53765 -37.42856 -34.76925 -33.76945 -32.54204 -31.70058 -31.52648 -30.36391 -29.76033 -27.89176 -27.20724 -24.73410 -23.78690 -23.60137 -23.07887 -22.39622 -22.15482 -19.84991 -18.30418 -17.87990 -17.58268 -16.98967 -16.81633 -16.51672 -15.94296 -15.75770 -15.34303 -14.89154 -14.59320 -14.35805 -14.25071 -14.05137 -13.96317 -13.75849 -13.49249 -13.34649 -13.20020 -12.99553 -12.58572 -12.44311 -12.24813 -12.07595 -11.95537 -11.80462 -11.55660 -11.43872 -11.27333 -11.05196 -10.92204 -10.90085 -10.43093 -10.23976 -10.15281 -10.04446 -9.86238 -9.80836 -9.54844 -9.46079 -9.39526 -9.02082 -8.39523 -7.34197 -5.84190 -3.19853 0.80586 0.82869 2.68402 2.77513 3.30876 3.34097 3.40749 3.42721 3.78383 4.15380 4.31066 4.34899 4.50799 4.52054 4.67851 4.72171 4.78824 4.84852 4.98288 5.01792 5.03635 5.10235 5.17856 5.29269 5.36539 5.39795 5.45894 5.46229 5.49906 5.55096 5.60262 5.62621 5.83955 5.87835 5.94982 5.98119 6.01934 6.10171 6.24651 6.27945 6.34822 6.36175 6.45280 6.55691 6.63369 6.77014 6.89565 6.95597 7.56907 7.64343 7.91284 8.28142 8.35148 9.12956 9.86048 10.05942 11.33797 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019465 B = 0.002338 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.118732 B =11975.191683 C =12401.884364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.073 3.927 3 H 0.087 0.913 4 O -0.349 6.349 5 C 0.097 3.903 6 C -0.042 4.042 7 C -0.149 4.149 8 C 0.096 3.904 9 N -0.484 5.484 10 C 0.095 3.905 11 C -0.151 4.151 12 C 0.515 3.485 13 O -0.533 6.533 14 N -0.599 5.599 15 C 0.117 3.883 16 C -0.133 4.133 17 C 0.204 3.796 18 C -0.150 4.150 19 N -0.742 5.742 20 C -0.237 4.237 21 H 0.092 0.908 22 C 0.007 3.993 23 N -0.933 5.933 24 Si 0.877 3.123 25 H -0.285 1.285 26 H -0.278 1.278 27 H -0.292 1.292 28 C -0.135 4.135 29 C 0.107 3.893 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.137 0.863 36 H 0.157 0.843 37 H 0.157 0.843 38 H 0.137 0.863 39 H 0.086 0.914 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.049 0.951 44 H 0.037 0.963 45 H 0.061 0.939 46 H 0.361 0.639 47 H 0.259 0.741 48 H 0.082 0.918 49 H 0.051 0.949 50 H 0.074 0.926 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.397 -2.434 -19.676 21.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.012 3.988 3 H 0.105 0.895 4 O -0.268 6.268 5 C 0.021 3.979 6 C -0.050 4.050 7 C -0.169 4.169 8 C -0.061 4.061 9 N -0.193 5.193 10 C -0.062 4.062 11 C -0.171 4.171 12 C 0.301 3.699 13 O -0.409 6.409 14 N -0.333 5.333 15 C -0.005 4.005 16 C -0.171 4.171 17 C 0.113 3.887 18 C -0.209 4.209 19 N -0.386 5.386 20 C -0.367 4.367 21 H 0.110 0.890 22 C -0.189 4.189 23 N -0.580 5.580 24 Si 0.708 3.292 25 H -0.212 1.212 26 H -0.204 1.204 27 H -0.219 1.219 28 C -0.175 4.175 29 C -0.015 4.015 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.155 0.845 36 H 0.175 0.825 37 H 0.174 0.826 38 H 0.155 0.845 39 H 0.104 0.896 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.069 0.931 44 H 0.056 0.944 45 H 0.080 0.920 46 H 0.194 0.806 47 H 0.069 0.931 48 H 0.101 0.899 49 H 0.070 0.930 50 H 0.092 0.908 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.928 -3.468 -20.394 22.945 hybrid contribution -0.844 -0.344 1.306 1.592 sum 9.084 -3.812 -19.088 21.480 Atomic orbital electron populations 1.22446 0.93242 1.04210 1.03918 1.21902 0.95388 0.96212 0.85283 0.89510 1.88109 1.86637 1.33532 1.18473 1.21417 1.00181 0.91658 0.84680 1.19977 0.93684 0.96658 0.94708 1.22117 0.95881 0.99856 0.99070 1.22781 0.99723 0.93100 0.90510 1.67667 1.03406 1.19632 1.28588 1.22774 0.91969 0.95382 0.96081 1.22099 1.01073 0.98188 0.95750 1.20214 0.80002 0.85513 0.84126 1.90685 1.40592 1.23531 1.86133 1.48058 1.55056 1.25082 1.05107 1.21547 0.98712 0.95423 0.84850 1.22143 0.98382 0.96777 0.99828 1.19485 0.86796 0.91900 0.90549 1.22190 0.98492 1.00644 0.99572 1.42897 1.20303 1.06399 1.69014 1.18951 0.96854 0.90665 1.30212 0.88994 1.24632 0.97103 0.96510 1.00689 1.69687 1.11299 1.31678 1.45382 0.86672 0.77683 0.86804 0.78045 1.21191 1.20382 1.21863 1.22294 0.99066 0.99167 0.96953 1.21974 0.96479 0.83194 0.99837 0.91057 0.89483 0.91298 0.91615 0.91737 0.84538 0.82530 0.82559 0.84548 0.89563 0.91291 0.91407 0.90702 0.93141 0.94359 0.91968 0.80570 0.93092 0.89913 0.93047 0.90791 0.89052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.88 9.10 37.16 0.34 -1.55 16 2 C 0.07 0.87 2.30 -27.88 -0.06 0.81 16 3 H 0.09 0.83 7.08 -51.93 -0.37 0.46 16 4 O -0.35 -4.49 9.51 -55.09 -0.52 -5.01 16 5 C 0.10 0.88 5.92 36.00 0.21 1.09 16 6 C -0.04 -0.40 5.55 -104.32 -0.58 -0.98 16 7 C -0.15 -1.36 9.82 -39.44 -0.39 -1.75 16 8 C 0.10 0.88 11.18 -17.55 -0.20 0.68 16 9 N -0.48 -5.11 10.36 -13.25 -0.14 -5.24 16 10 C 0.09 0.85 11.18 -17.55 -0.20 0.65 16 11 C -0.15 -1.32 9.82 -39.44 -0.39 -1.71 16 12 C 0.51 7.96 7.12 -10.98 -0.08 7.88 16 13 O -0.53 -10.22 15.92 -14.30 -0.23 -10.45 16 14 N -0.60 -8.90 2.97 -172.80 -0.51 -9.41 16 15 C 0.12 1.79 6.16 -3.71 -0.02 1.77 16 16 C -0.13 -1.94 4.96 -26.61 -0.13 -2.07 16 17 C 0.20 3.38 0.74 -131.78 -0.10 3.29 16 18 C -0.15 -2.44 8.44 37.16 0.31 -2.12 16 19 N -0.74 -15.27 3.94 -47.20 -0.19 -15.46 16 20 C -0.24 -5.89 9.16 -15.06 -0.14 -6.02 16 21 H 0.09 2.45 6.93 -52.48 -0.36 2.09 16 22 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 23 N -0.93 -27.53 13.97 55.49 0.78 -26.76 16 24 Si 0.88 20.95 27.74 -169.99 -4.71 16.24 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.28 -6.27 6.52 56.52 0.37 -5.91 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 C -0.13 -2.01 4.70 -26.63 -0.13 -2.14 16 29 C 0.11 1.52 4.71 -3.74 -0.02 1.50 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.09 0.92 5.41 -51.93 -0.28 0.64 16 32 H 0.07 0.56 7.87 -51.93 -0.41 0.15 16 33 H 0.07 0.46 7.83 -51.93 -0.41 0.05 16 34 H 0.06 0.49 8.04 -51.93 -0.42 0.07 16 35 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.16 1.02 8.06 -52.49 -0.42 0.59 16 37 H 0.16 0.97 8.06 -52.49 -0.42 0.54 16 38 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.09 1.34 7.00 -51.93 -0.36 0.98 16 40 H 0.07 1.13 6.94 -51.93 -0.36 0.77 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 1.13 7.27 -51.93 -0.38 0.75 16 46 H 0.36 7.58 4.32 -40.82 -0.18 7.40 16 47 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 48 H 0.08 1.36 7.31 -51.93 -0.38 0.98 16 49 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 50 H 0.07 0.84 4.66 -51.93 -0.24 0.59 16 51 H 0.09 1.54 7.74 -51.93 -0.40 1.14 16 LS Contribution 399.31 15.07 6.02 6.02 Total: -1.00 -33.06 399.31 -9.11 -42.17 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -7.94 Total: 8.50 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -1.65 Total: -0.59 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: -0.06 Total: -56.87 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.75 Total: -15.45 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.71 Total: 16.24 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.06 -9.11 -42.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570381023.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.572 kcal (2) G-P(sol) polarization free energy of solvation -33.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds