Wall clock time and date at job start Wed Apr 1 2020 04:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46751 * 2 1 4 4 O 1.42895 * 109.47326 * 240.00317 * 2 1 3 5 5 C 1.42899 * 114.00381 * 89.99586 * 4 2 1 6 6 C 1.50697 * 109.47722 * 179.97438 * 5 4 2 7 7 C 1.38650 * 120.78873 * 269.72730 * 6 5 4 8 8 C 1.38203 * 119.15964 * 179.79272 * 7 6 5 9 9 N 1.31873 * 120.76538 * 0.48735 * 8 7 6 10 10 C 1.31864 * 121.72500 * 359.73715 * 9 8 7 11 11 C 1.38205 * 120.76670 * 0.02562 * 10 9 8 12 12 C 1.50700 * 109.46975 * 120.00092 * 2 1 3 13 13 O 1.21282 * 119.99870 * 115.00398 * 12 2 1 14 14 N 1.34778 * 119.99872 * 295.00152 * 12 2 1 15 15 C 1.46925 * 120.62854 * 180.02562 * 14 12 2 16 16 C 1.53192 * 108.77417 * 126.37037 * 15 14 12 17 17 C 1.53036 * 109.31289 * 54.63817 * 16 15 14 18 18 C 1.53001 * 109.45946 * 178.62967 * 17 16 15 19 19 N 1.46496 * 109.46552 * 58.65105 * 17 16 15 20 20 C 1.36934 * 120.00548 * 179.97438 * 19 17 16 21 21 H 1.08004 * 119.99288 * 0.02562 * 20 19 17 22 22 C 1.38805 * 120.00389 * 180.02562 * 20 19 17 23 23 N 1.31624 * 120.00257 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99929 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47174 * 270.00277 * 24 22 20 26 26 H 1.48501 * 109.47062 * 30.00228 * 24 22 20 27 27 H 1.48499 * 109.46981 * 150.00382 * 24 22 20 28 28 C 1.53048 * 109.53715 * 298.63071 * 17 16 15 29 29 C 1.46928 * 120.63155 * 359.97438 * 14 12 2 30 30 H 1.09003 * 109.46960 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47517 * 299.99668 * 1 2 3 32 32 H 1.09003 * 109.47071 * 60.00382 * 1 2 3 33 33 H 1.09004 * 109.47283 * 300.00332 * 5 4 2 34 34 H 1.09005 * 109.47097 * 59.99816 * 5 4 2 35 35 H 1.07996 * 120.42112 * 359.97438 * 7 6 5 36 36 H 1.08000 * 119.61879 * 180.20001 * 8 7 6 37 37 H 1.07999 * 119.61855 * 180.02562 * 10 9 8 38 38 H 1.08000 * 120.42133 * 180.02562 * 11 10 9 39 39 H 1.08994 * 109.58631 * 6.58036 * 15 14 12 40 40 H 1.09000 * 109.58691 * 246.15998 * 15 14 12 41 41 H 1.08996 * 109.49780 * 294.68289 * 16 15 14 42 42 H 1.09005 * 109.52310 * 174.60414 * 16 15 14 43 43 H 1.09003 * 109.47162 * 300.01997 * 18 17 16 44 44 H 1.09002 * 109.47474 * 60.02292 * 18 17 16 45 45 H 1.09005 * 109.47258 * 180.02562 * 18 17 16 46 46 H 0.96999 * 119.99694 * 0.02562 * 19 17 16 47 47 H 0.97001 * 119.99885 * 179.97438 * 23 22 20 48 48 H 1.08994 * 109.49895 * 181.31762 * 28 17 16 49 49 H 1.09004 * 109.49676 * 301.41577 * 28 17 16 50 50 H 1.08994 * 109.58761 * 353.42094 * 29 14 12 51 51 H 1.09001 * 109.58280 * 113.84211 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6735 -1.1668 5 6 2.2001 0.1830 -2.2941 6 6 2.7015 -0.6280 -3.4610 7 6 4.0606 -0.8063 -3.6697 8 6 4.4831 -1.5600 -4.7483 9 7 3.6110 -2.0980 -5.5783 10 6 2.3116 -1.9456 -5.4134 11 6 1.8149 -1.2090 -4.3547 12 6 2.0323 -0.7104 1.2305 13 8 2.6530 -1.7467 1.1215 14 7 1.7918 -0.1942 2.4520 15 6 2.2756 -0.8750 3.6608 16 6 3.0895 0.1197 4.4945 17 6 2.2406 1.3627 4.7704 18 6 3.0383 2.3439 5.6317 19 7 1.0193 0.9724 5.4791 20 6 0.1004 1.9232 5.8348 21 1 0.2759 2.9610 5.5924 22 6 -1.0565 1.5534 6.5067 23 7 -1.9400 2.4674 6.8482 24 14 -1.3603 -0.2416 6.9251 25 1 -2.0962 -0.8919 5.8113 26 1 -0.0599 -0.9296 7.1275 27 1 -2.1662 -0.3303 8.1693 28 6 1.8691 2.0332 3.4457 29 6 1.0419 1.0606 2.6001 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.2538 0.6547 -2.5589 34 1 2.9319 0.9515 -2.0450 35 1 4.7798 -0.3641 -2.9963 36 1 5.5399 -1.7064 -4.9159 37 1 1.6275 -2.4016 -6.1138 38 1 0.7495 -1.0881 -4.2248 39 1 2.9068 -1.7173 3.3780 40 1 1.4265 -1.2317 4.2439 41 1 3.9865 0.4061 3.9455 42 1 3.3738 -0.3438 5.4393 43 1 3.3025 1.8670 6.5756 44 1 3.9470 2.6345 5.1046 45 1 2.4336 3.2292 5.8288 46 1 0.8619 0.0404 5.6970 47 1 -2.7487 2.2088 7.3174 48 1 1.2843 2.9313 3.6439 49 1 2.7777 2.3017 2.9065 50 1 0.8592 1.4952 1.6174 51 1 0.0920 0.8621 3.0964 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570381023.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:13 Heat of formation + Delta-G solvation = -40.953107 kcal Electronic energy + Delta-G solvation = -31262.160145 eV Core-core repulsion = 27161.537505 eV Total energy + Delta-G solvation = -4100.622640 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.62965 -41.08895 -39.67026 -38.52501 -36.18500 -34.60857 -34.16359 -32.84041 -32.15371 -31.57942 -31.35388 -29.14602 -27.89399 -25.90618 -25.28299 -24.42377 -24.30076 -23.44279 -22.95458 -21.04342 -19.75963 -19.57274 -18.59495 -17.86969 -17.57270 -17.40449 -16.87927 -16.52844 -16.48933 -16.31186 -15.96382 -15.57942 -15.41672 -15.06761 -14.90540 -14.77236 -14.62177 -14.41865 -14.40243 -14.17598 -13.86504 -13.66395 -13.41710 -13.10124 -12.97973 -12.95142 -12.71687 -12.66941 -12.57443 -12.47014 -12.29543 -12.13980 -11.97301 -11.75578 -11.61330 -11.14431 -11.04469 -10.84578 -10.76075 -10.48107 -10.46722 -10.09548 -9.68971 -9.18015 -7.92517 -5.22853 0.12918 0.19221 1.39791 1.40509 1.47434 1.52262 1.75520 2.53537 2.62811 3.03834 3.38192 3.39836 3.57151 3.57979 3.71724 3.76156 3.85914 3.91291 3.97192 4.01606 4.11326 4.13588 4.19753 4.24635 4.37747 4.39394 4.42717 4.60482 4.63170 4.66078 4.68818 4.71968 4.81250 4.86422 4.88067 4.98032 4.98993 5.02418 5.08143 5.17221 5.20093 5.28384 5.33521 5.34219 5.57694 5.64424 5.74717 5.91971 5.99663 6.32259 6.41438 6.99268 7.10926 7.18378 7.95786 8.13048 9.28856 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019465 B = 0.002338 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.118732 B =11975.191683 C =12401.884364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.078 3.922 3 H 0.118 0.882 4 O -0.377 6.377 5 C 0.094 3.906 6 C -0.059 4.059 7 C -0.158 4.158 8 C 0.084 3.916 9 N -0.511 5.511 10 C 0.084 3.916 11 C -0.155 4.155 12 C 0.510 3.490 13 O -0.576 6.576 14 N -0.596 5.596 15 C 0.115 3.885 16 C -0.122 4.122 17 C 0.192 3.808 18 C -0.144 4.144 19 N -0.743 5.743 20 C -0.194 4.194 21 H 0.070 0.930 22 C -0.062 4.062 23 N -0.984 5.984 24 Si 0.933 3.067 25 H -0.286 1.286 26 H -0.257 1.257 27 H -0.307 1.307 28 C -0.130 4.130 29 C 0.112 3.888 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.149 0.851 36 H 0.176 0.824 37 H 0.178 0.822 38 H 0.156 0.844 39 H 0.083 0.917 40 H 0.055 0.945 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.043 0.957 44 H 0.070 0.930 45 H 0.037 0.963 46 H 0.360 0.640 47 H 0.252 0.748 48 H 0.066 0.934 49 H 0.081 0.919 50 H 0.109 0.891 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.802 -2.306 -21.369 24.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.017 3.983 3 H 0.136 0.864 4 O -0.296 6.296 5 C 0.018 3.982 6 C -0.067 4.067 7 C -0.178 4.178 8 C -0.073 4.073 9 N -0.221 5.221 10 C -0.073 4.073 11 C -0.175 4.175 12 C 0.299 3.701 13 O -0.455 6.455 14 N -0.329 5.329 15 C -0.008 4.008 16 C -0.160 4.160 17 C 0.103 3.897 18 C -0.204 4.204 19 N -0.387 5.387 20 C -0.325 4.325 21 H 0.088 0.912 22 C -0.253 4.253 23 N -0.636 5.636 24 Si 0.763 3.237 25 H -0.213 1.213 26 H -0.182 1.182 27 H -0.235 1.235 28 C -0.170 4.170 29 C -0.010 4.010 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.116 0.884 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.167 0.833 36 H 0.193 0.807 37 H 0.195 0.805 38 H 0.174 0.826 39 H 0.102 0.898 40 H 0.073 0.927 41 H 0.106 0.894 42 H 0.099 0.901 43 H 0.063 0.937 44 H 0.089 0.911 45 H 0.056 0.944 46 H 0.194 0.806 47 H 0.061 0.939 48 H 0.084 0.916 49 H 0.099 0.901 50 H 0.127 0.873 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.391 -3.344 -22.114 25.099 hybrid contribution -1.166 -0.353 1.745 2.128 sum 10.225 -3.697 -20.369 23.089 Atomic orbital electron populations 1.22428 0.92220 1.03507 1.05228 1.21926 0.95929 0.96846 0.83579 0.86425 1.88077 1.86876 1.35268 1.19414 1.21633 1.01895 0.91371 0.83275 1.20249 0.94070 0.97154 0.95249 1.22343 0.96310 0.99882 0.99266 1.23156 1.00642 0.92993 0.90475 1.67689 1.04323 1.20554 1.29490 1.23202 0.91933 0.95436 0.96707 1.22363 1.02078 0.97666 0.95378 1.20943 0.79049 0.85043 0.85087 1.90663 1.42619 1.25493 1.86759 1.48092 1.54712 1.25051 1.05051 1.21504 0.98310 0.95796 0.85199 1.22059 0.98325 0.95339 1.00280 1.19836 0.85526 0.93332 0.91006 1.22119 0.99318 0.99251 0.99665 1.42960 1.21000 1.05551 1.69169 1.18891 0.96446 0.90437 1.26735 0.91179 1.25228 0.97745 0.99771 1.02543 1.69840 1.12153 1.33570 1.48060 0.85738 0.78046 0.83021 0.76881 1.21266 1.18203 1.23487 1.22226 1.00217 0.98328 0.96260 1.21940 0.94820 0.82843 1.01354 0.92829 0.89728 0.88355 0.89291 0.90135 0.83291 0.80673 0.80464 0.82636 0.89821 0.92667 0.89380 0.90111 0.93743 0.91132 0.94421 0.80642 0.93918 0.91568 0.90075 0.87320 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.18 9.10 71.98 0.66 -2.52 16 2 C 0.08 1.61 2.30 29.85 0.07 1.68 16 3 H 0.12 1.69 7.08 -2.39 -0.02 1.67 16 4 O -0.38 -8.74 9.51 -129.99 -1.24 -9.97 16 5 C 0.09 1.40 5.92 71.23 0.42 1.82 16 6 C -0.06 -1.01 5.55 -19.67 -0.11 -1.12 16 7 C -0.16 -2.66 9.82 22.36 0.22 -2.44 16 8 C 0.08 1.45 11.18 84.68 0.95 2.40 16 9 N -0.51 -10.35 10.36 -195.85 -2.03 -12.38 16 10 C 0.08 1.39 11.18 84.68 0.95 2.34 16 11 C -0.16 -2.42 9.82 22.36 0.22 -2.20 16 12 C 0.51 14.76 7.12 87.66 0.62 15.38 16 13 O -0.58 -21.53 15.92 15.96 0.25 -21.28 16 14 N -0.60 -16.44 2.97 -819.01 -2.43 -18.87 16 15 C 0.11 3.32 6.16 86.36 0.53 3.85 16 16 C -0.12 -3.21 4.96 30.67 0.15 -3.06 16 17 C 0.19 5.97 0.74 3.63 0.00 5.97 16 18 C -0.14 -4.39 8.44 71.98 0.61 -3.78 16 19 N -0.74 -29.77 3.94 -303.23 -1.19 -30.96 16 20 C -0.19 -9.65 9.16 84.03 0.77 -8.88 16 21 H 0.07 3.79 6.93 -2.91 -0.02 3.77 16 22 C -0.06 -3.40 5.50 84.86 0.47 -2.93 16 23 N -0.98 -59.78 13.97 21.65 0.30 -59.48 16 24 Si 0.93 43.75 27.74 68.60 1.90 45.66 16 25 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 26 H -0.26 -10.98 6.52 99.48 0.65 -10.33 16 27 H -0.31 -15.10 7.11 99.48 0.71 -14.39 16 28 C -0.13 -3.56 4.70 30.66 0.14 -3.41 16 29 C 0.11 2.92 4.71 86.35 0.41 3.32 16 30 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.08 1.56 5.41 -2.39 -0.01 1.55 16 32 H 0.10 1.20 7.87 -2.39 -0.02 1.18 16 33 H 0.09 0.89 7.83 -2.38 -0.02 0.87 16 34 H 0.08 0.92 8.04 -2.38 -0.02 0.90 16 35 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 36 H 0.18 2.10 8.06 -2.91 -0.02 2.08 16 37 H 0.18 1.93 8.06 -2.91 -0.02 1.91 16 38 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 39 H 0.08 2.50 7.00 -2.39 -0.02 2.48 16 40 H 0.06 1.75 6.94 -2.39 -0.02 1.73 16 41 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 43 H 0.04 1.38 8.14 -2.39 -0.02 1.37 16 44 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.04 1.31 7.27 -2.38 -0.02 1.30 16 46 H 0.36 14.62 4.32 -92.71 -0.40 14.21 16 47 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 48 H 0.07 2.06 7.31 -2.39 -0.02 2.04 16 49 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 50 H 0.11 2.06 4.66 -2.39 -0.01 2.05 16 51 H 0.06 2.02 7.74 -2.39 -0.02 2.01 16 Total: -1.00 -73.81 399.31 3.12 -70.69 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: 0.48 Total: 30.17 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: 7.08 Total: 6.43 kcal Atomic # 7 Polarization: -116.34 SS G_CDS: -5.36 Total: -121.70 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -0.98 Total: -31.25 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.90 Total: 45.66 kcal Total: -73.81 3.12 -70.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570381023.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.741 kcal (2) G-P(sol) polarization free energy of solvation -73.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds