Wall clock time and date at job start Wed Apr 1 2020 04:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47621 * 2 1 4 4 O 1.42904 * 109.47239 * 120.00428 * 2 1 3 5 5 C 1.42900 * 113.99873 * 269.99867 * 4 2 1 6 6 C 1.50697 * 109.46760 * 180.02562 * 5 4 2 7 7 C 1.38646 * 120.78929 * 269.71331 * 6 5 4 8 8 C 1.38208 * 119.16283 * 179.80379 * 7 6 5 9 9 N 1.31862 * 120.76449 * 0.48778 * 8 7 6 10 10 C 1.31875 * 121.72764 * 359.74312 * 9 8 7 11 11 C 1.38208 * 120.76002 * 0.02562 * 10 9 8 12 12 C 1.50704 * 109.46755 * 240.00579 * 2 1 3 13 13 O 1.21282 * 119.99786 * 254.92911 * 12 2 1 14 14 N 1.34776 * 120.00298 * 74.93394 * 12 2 1 15 15 C 1.46925 * 120.62948 * 175.06018 * 14 12 2 16 16 C 1.53188 * 108.77407 * 126.41265 * 15 14 12 17 17 C 1.53041 * 109.31215 * 54.63410 * 16 15 14 18 18 C 1.52996 * 109.45918 * 178.62637 * 17 16 15 19 19 N 1.46502 * 109.46130 * 58.65504 * 17 16 15 20 20 C 1.36934 * 120.00104 * 179.97438 * 19 17 16 21 21 H 1.07993 * 120.00020 * 359.97438 * 20 19 17 22 22 C 1.38813 * 119.99972 * 179.97438 * 20 19 17 23 23 N 1.31625 * 119.99980 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00098 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47041 * 180.02562 * 24 22 20 26 26 H 1.48497 * 109.47295 * 300.00024 * 24 22 20 27 27 H 1.48496 * 109.47099 * 60.00275 * 24 22 20 28 28 C 1.53031 * 109.52698 * 298.64140 * 17 16 15 29 29 C 1.46922 * 120.63074 * 355.08341 * 14 12 2 30 30 H 1.09002 * 109.46953 * 306.19374 * 1 2 3 31 31 H 1.09004 * 109.47342 * 66.18940 * 1 2 3 32 32 H 1.08995 * 109.47357 * 186.19723 * 1 2 3 33 33 H 1.09003 * 109.47141 * 300.00101 * 5 4 2 34 34 H 1.08992 * 109.47089 * 59.99774 * 5 4 2 35 35 H 1.07997 * 120.42037 * 0.02562 * 7 6 5 36 36 H 1.08003 * 119.61578 * 180.21227 * 8 7 6 37 37 H 1.07991 * 119.62258 * 180.02562 * 10 9 8 38 38 H 1.07995 * 120.41534 * 179.97438 * 11 10 9 39 39 H 1.09004 * 109.58669 * 6.62253 * 15 14 12 40 40 H 1.08997 * 109.58465 * 246.20339 * 15 14 12 41 41 H 1.08994 * 109.50170 * 294.68271 * 16 15 14 42 42 H 1.08999 * 109.52590 * 174.59964 * 16 15 14 43 43 H 1.08998 * 109.47424 * 300.02520 * 18 17 16 44 44 H 1.08999 * 109.47323 * 60.02794 * 18 17 16 45 45 H 1.09004 * 109.47244 * 180.02562 * 18 17 16 46 46 H 0.97000 * 119.99815 * 359.97320 * 19 17 16 47 47 H 0.96996 * 119.99795 * 359.97438 * 23 22 20 48 48 H 1.09006 * 109.49783 * 181.30917 * 28 17 16 49 49 H 1.08997 * 109.50025 * 301.40733 * 28 17 16 50 50 H 1.09002 * 109.58277 * 353.37768 * 29 14 12 51 51 H 1.09000 * 109.58764 * 113.79586 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2001 0.1828 2.2941 6 6 2.7015 -0.6285 3.4609 7 6 1.8150 -1.2045 4.3579 8 6 2.3115 -1.9453 5.4138 9 7 3.6108 -2.0986 5.5782 10 6 4.4831 -1.5614 4.7477 11 6 4.0604 -0.8115 3.6664 12 6 2.0322 -0.7103 -1.2306 13 8 2.4918 -1.8290 -1.1399 14 7 1.9708 -0.1024 -2.4319 15 6 2.5537 -0.7363 -3.6223 16 6 1.4840 -0.8076 -4.7166 17 6 0.9185 0.5929 -4.9635 18 6 -0.1259 0.5313 -6.0799 19 7 2.0032 1.4946 -5.3592 20 6 1.7351 2.8089 -5.6343 21 1 0.7239 3.1807 -5.5601 22 6 2.7630 3.6634 -6.0087 23 7 3.9954 3.2101 -6.0998 24 14 2.3971 5.4562 -6.3848 25 1 3.6555 6.1504 -6.7584 26 1 1.4335 5.5389 -7.5116 27 1 1.8114 6.1043 -5.1840 28 6 0.2646 1.1138 -3.6817 29 6 1.3201 1.2070 -2.5758 30 1 -0.3633 0.6069 0.8294 31 1 -0.3634 0.4149 -0.9402 32 1 -0.3634 -1.0216 0.1109 33 1 2.9320 0.9512 2.0450 34 1 1.2539 0.6545 2.5588 35 1 0.7499 -1.0791 4.2311 36 1 1.6274 -2.4002 6.1149 37 1 5.5398 -1.7090 4.9144 38 1 4.7796 -0.3738 2.9900 39 1 2.8890 -1.7431 -3.3730 40 1 3.3983 -0.1445 -3.9748 41 1 0.6816 -1.4730 -4.3983 42 1 1.9286 -1.1877 -5.6364 43 1 0.3398 0.1609 -6.9931 44 1 -0.9331 -0.1395 -5.7857 45 1 -0.5285 1.5288 -6.2562 46 1 2.9114 1.1605 -5.4262 47 1 4.1853 2.2791 -5.9048 48 1 -0.1585 2.1016 -3.8646 49 1 -0.5264 0.4302 -3.3731 50 1 0.8416 1.4825 -1.6360 51 1 2.0642 1.9574 -2.8431 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570381024.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:18 Heat of formation + Delta-G solvation = -25.375973 kcal Electronic energy + Delta-G solvation = -31230.186550 eV Core-core repulsion = 27130.239386 eV Total energy + Delta-G solvation = -4099.947165 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.57172 -40.25924 -38.49798 -37.39749 -34.74882 -33.76175 -32.72914 -31.74900 -31.50381 -30.33680 -28.82265 -27.83045 -27.18475 -24.68020 -23.76700 -23.65885 -23.01953 -22.42801 -22.20975 -19.94603 -18.39388 -17.74297 -17.10272 -16.94508 -16.79110 -16.57706 -15.90320 -15.64376 -15.46863 -15.08332 -14.65773 -14.29939 -14.07771 -14.05700 -13.96005 -13.77917 -13.63005 -13.45529 -13.15236 -12.83000 -12.66852 -12.50979 -12.22973 -12.06994 -11.82028 -11.66333 -11.50124 -11.41417 -11.32894 -10.87148 -10.84544 -10.59966 -10.34715 -10.16053 -10.03423 -10.02886 -9.90514 -9.78729 -9.43815 -9.36774 -9.14888 -9.00389 -8.33803 -7.09573 -6.14302 -3.15361 0.82670 0.85152 2.68917 2.82214 3.45242 3.45492 3.48340 3.66085 3.80712 4.17489 4.32602 4.37272 4.51993 4.60227 4.70393 4.74121 4.81446 4.86630 4.99844 5.04769 5.07836 5.19268 5.25420 5.31441 5.38326 5.44262 5.46833 5.47833 5.48625 5.62809 5.64669 5.65527 5.84354 5.91258 5.95817 6.00423 6.03877 6.12968 6.28100 6.30214 6.37947 6.38440 6.43838 6.59221 6.70780 6.78329 6.90206 6.96643 7.61502 7.66452 7.75492 8.31356 8.69915 9.16158 10.02882 10.18726 11.33276 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015687 B = 0.002345 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.440263 B =11938.686242 C =12603.909320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.072 3.928 3 H 0.086 0.914 4 O -0.350 6.350 5 C 0.096 3.904 6 C -0.042 4.042 7 C -0.152 4.152 8 C 0.094 3.906 9 N -0.483 5.483 10 C 0.096 3.904 11 C -0.149 4.149 12 C 0.515 3.485 13 O -0.533 6.533 14 N -0.598 5.598 15 C 0.118 3.882 16 C -0.131 4.131 17 C 0.203 3.797 18 C -0.149 4.149 19 N -0.728 5.728 20 C -0.323 4.323 21 H 0.065 0.935 22 C -0.044 4.044 23 N -0.944 5.944 24 Si 1.075 2.925 25 H -0.286 1.286 26 H -0.297 1.297 27 H -0.296 1.296 28 C -0.133 4.133 29 C 0.108 3.892 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.136 0.864 36 H 0.157 0.843 37 H 0.158 0.842 38 H 0.137 0.863 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.048 0.952 44 H 0.036 0.964 45 H 0.056 0.944 46 H 0.367 0.633 47 H 0.255 0.745 48 H 0.077 0.923 49 H 0.049 0.951 50 H 0.071 0.929 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.166 -5.896 17.591 19.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.011 3.989 3 H 0.104 0.896 4 O -0.268 6.268 5 C 0.020 3.980 6 C -0.050 4.050 7 C -0.171 4.171 8 C -0.062 4.062 9 N -0.193 5.193 10 C -0.061 4.061 11 C -0.169 4.169 12 C 0.301 3.699 13 O -0.409 6.409 14 N -0.332 5.332 15 C -0.004 4.004 16 C -0.169 4.169 17 C 0.111 3.889 18 C -0.208 4.208 19 N -0.371 5.371 20 C -0.454 4.454 21 H 0.083 0.917 22 C -0.242 4.242 23 N -0.589 5.589 24 Si 0.906 3.094 25 H -0.212 1.212 26 H -0.224 1.224 27 H -0.224 1.224 28 C -0.173 4.173 29 C -0.014 4.014 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.154 0.846 36 H 0.174 0.826 37 H 0.175 0.825 38 H 0.155 0.845 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.068 0.932 44 H 0.055 0.945 45 H 0.076 0.924 46 H 0.201 0.799 47 H 0.066 0.934 48 H 0.095 0.905 49 H 0.068 0.932 50 H 0.090 0.910 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.095 -5.620 17.885 19.713 hybrid contribution -0.942 -0.585 -0.471 1.205 sum -7.037 -6.206 17.413 19.780 Atomic orbital electron populations 1.22348 0.93407 1.03929 1.03581 1.21934 0.95320 0.96312 0.85325 0.89579 1.88112 1.86640 1.33533 1.18492 1.21427 1.00212 0.91702 0.84663 1.19974 0.93697 0.96649 0.94697 1.22083 1.01000 0.98272 0.95792 1.22767 0.91984 0.95403 0.96095 1.67665 1.03394 1.19647 1.28586 1.22788 0.99741 0.93077 0.90451 1.22139 0.95923 0.99769 0.99069 1.20198 0.79163 0.86360 0.84132 1.90681 1.45851 1.18702 1.85677 1.48040 1.56900 1.20976 1.07279 1.21545 0.95996 0.98740 0.84080 1.22108 0.98666 0.97837 0.98316 1.19456 0.89279 0.88468 0.91661 1.22193 0.98216 1.01083 0.99314 1.42516 1.04656 1.07336 1.82627 1.19897 0.95581 0.86486 1.43449 0.91737 1.25655 0.93129 1.05034 1.00396 1.70892 1.19304 1.16604 1.52106 0.83300 0.75076 0.75154 0.75839 1.21179 1.22410 1.22384 1.22277 0.96736 1.01920 0.96407 1.21883 0.96750 0.84123 0.98614 0.91316 0.90031 0.90928 0.91627 0.91651 0.84601 0.82580 0.82487 0.84476 0.89728 0.90911 0.91720 0.90846 0.93243 0.94529 0.92444 0.79925 0.93414 0.90462 0.93213 0.91039 0.89278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.76 9.07 37.16 0.34 -1.42 16 2 C 0.07 0.90 2.28 -27.88 -0.06 0.84 16 3 H 0.09 0.92 7.00 -51.93 -0.36 0.56 16 4 O -0.35 -4.67 9.55 -54.68 -0.52 -5.19 16 5 C 0.10 0.93 5.92 36.00 0.21 1.14 16 6 C -0.04 -0.42 5.55 -104.32 -0.58 -1.00 16 7 C -0.15 -1.36 9.82 -39.44 -0.39 -1.74 16 8 C 0.09 0.87 11.18 -17.55 -0.20 0.67 16 9 N -0.48 -5.27 10.36 -13.25 -0.14 -5.41 16 10 C 0.10 0.93 11.18 -17.54 -0.20 0.74 16 11 C -0.15 -1.46 9.82 -39.44 -0.39 -1.85 16 12 C 0.52 8.34 7.01 -10.98 -0.08 8.26 16 13 O -0.53 -10.59 15.98 -13.90 -0.22 -10.82 16 14 N -0.60 -9.41 2.97 -172.79 -0.51 -9.92 16 15 C 0.12 1.95 6.17 -3.71 -0.02 1.92 16 16 C -0.13 -2.06 4.96 -26.61 -0.13 -2.19 16 17 C 0.20 3.56 0.74 -131.78 -0.10 3.47 16 18 C -0.15 -2.54 8.44 37.16 0.31 -2.23 16 19 N -0.73 -15.89 4.13 -47.20 -0.19 -16.08 16 20 C -0.32 -8.03 8.68 -15.06 -0.13 -8.16 16 21 H 0.06 1.59 6.70 -52.49 -0.35 1.23 16 22 C -0.04 -1.19 5.50 -17.43 -0.10 -1.29 16 23 N -0.94 -27.48 13.70 55.49 0.76 -26.72 16 24 Si 1.07 24.46 29.92 -169.99 -5.09 19.38 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 26 H -0.30 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.30 -6.39 7.11 56.52 0.40 -5.99 16 28 C -0.13 -2.09 4.70 -26.63 -0.13 -2.21 16 29 C 0.11 1.63 5.32 -3.73 -0.02 1.61 16 30 H 0.07 0.52 8.02 -51.93 -0.42 0.11 16 31 H 0.08 0.80 6.03 -51.93 -0.31 0.49 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.56 8.05 -51.93 -0.42 0.14 16 34 H 0.07 0.48 7.98 -51.93 -0.41 0.07 16 35 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.16 0.98 8.06 -52.48 -0.42 0.56 16 37 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.08 1.41 7.00 -51.93 -0.36 1.04 16 40 H 0.07 1.29 6.94 -51.93 -0.36 0.93 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 1.06 7.27 -51.93 -0.38 0.68 16 46 H 0.37 8.54 5.29 -40.82 -0.22 8.32 16 47 H 0.25 7.31 6.77 -40.82 -0.28 7.03 16 48 H 0.08 1.29 7.32 -51.93 -0.38 0.91 16 49 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.07 0.86 4.40 -51.93 -0.23 0.63 16 51 H 0.09 1.62 7.74 -51.93 -0.40 1.22 16 LS Contribution 401.85 15.07 6.06 6.06 Total: -1.00 -32.94 401.85 -9.41 -42.35 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -7.90 Total: 9.81 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -1.65 Total: -3.44 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: -0.09 Total: -58.14 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.74 Total: -16.01 kcal Atomic # 14 Polarization: 24.46 SS G_CDS: -5.09 Total: 19.38 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.94 -9.41 -42.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570381024.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.970 kcal (2) G-P(sol) polarization free energy of solvation -32.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds