Wall clock time and date at job start Wed Apr 1 2020 04:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47621 * 2 1 4 4 O 1.42904 * 109.47239 * 120.00428 * 2 1 3 5 5 C 1.42900 * 113.99873 * 269.99867 * 4 2 1 6 6 C 1.50697 * 109.46760 * 180.02562 * 5 4 2 7 7 C 1.38646 * 120.78929 * 269.71331 * 6 5 4 8 8 C 1.38208 * 119.16283 * 179.80379 * 7 6 5 9 9 N 1.31862 * 120.76449 * 0.48778 * 8 7 6 10 10 C 1.31875 * 121.72764 * 359.74312 * 9 8 7 11 11 C 1.38208 * 120.76002 * 0.02562 * 10 9 8 12 12 C 1.50704 * 109.46755 * 240.00579 * 2 1 3 13 13 O 1.21282 * 119.99786 * 254.92911 * 12 2 1 14 14 N 1.34776 * 120.00298 * 74.93394 * 12 2 1 15 15 C 1.46925 * 120.62948 * 175.06018 * 14 12 2 16 16 C 1.53188 * 108.77407 * 126.41265 * 15 14 12 17 17 C 1.53041 * 109.31215 * 54.63410 * 16 15 14 18 18 C 1.52996 * 109.45918 * 178.62637 * 17 16 15 19 19 N 1.46502 * 109.46130 * 58.65504 * 17 16 15 20 20 C 1.36934 * 120.00104 * 179.97438 * 19 17 16 21 21 H 1.07993 * 120.00020 * 359.97438 * 20 19 17 22 22 C 1.38813 * 119.99972 * 179.97438 * 20 19 17 23 23 N 1.31625 * 119.99980 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00098 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47041 * 180.02562 * 24 22 20 26 26 H 1.48497 * 109.47295 * 300.00024 * 24 22 20 27 27 H 1.48496 * 109.47099 * 60.00275 * 24 22 20 28 28 C 1.53031 * 109.52698 * 298.64140 * 17 16 15 29 29 C 1.46922 * 120.63074 * 355.08341 * 14 12 2 30 30 H 1.09002 * 109.46953 * 306.19374 * 1 2 3 31 31 H 1.09004 * 109.47342 * 66.18940 * 1 2 3 32 32 H 1.08995 * 109.47357 * 186.19723 * 1 2 3 33 33 H 1.09003 * 109.47141 * 300.00101 * 5 4 2 34 34 H 1.08992 * 109.47089 * 59.99774 * 5 4 2 35 35 H 1.07997 * 120.42037 * 0.02562 * 7 6 5 36 36 H 1.08003 * 119.61578 * 180.21227 * 8 7 6 37 37 H 1.07991 * 119.62258 * 180.02562 * 10 9 8 38 38 H 1.07995 * 120.41534 * 179.97438 * 11 10 9 39 39 H 1.09004 * 109.58669 * 6.62253 * 15 14 12 40 40 H 1.08997 * 109.58465 * 246.20339 * 15 14 12 41 41 H 1.08994 * 109.50170 * 294.68271 * 16 15 14 42 42 H 1.08999 * 109.52590 * 174.59964 * 16 15 14 43 43 H 1.08998 * 109.47424 * 300.02520 * 18 17 16 44 44 H 1.08999 * 109.47323 * 60.02794 * 18 17 16 45 45 H 1.09004 * 109.47244 * 180.02562 * 18 17 16 46 46 H 0.97000 * 119.99815 * 359.97320 * 19 17 16 47 47 H 0.96996 * 119.99795 * 359.97438 * 23 22 20 48 48 H 1.09006 * 109.49783 * 181.30917 * 28 17 16 49 49 H 1.08997 * 109.50025 * 301.40733 * 28 17 16 50 50 H 1.09002 * 109.58277 * 353.37768 * 29 14 12 51 51 H 1.09000 * 109.58764 * 113.79586 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2001 0.1828 2.2941 6 6 2.7015 -0.6285 3.4609 7 6 1.8150 -1.2045 4.3579 8 6 2.3115 -1.9453 5.4138 9 7 3.6108 -2.0986 5.5782 10 6 4.4831 -1.5614 4.7477 11 6 4.0604 -0.8115 3.6664 12 6 2.0322 -0.7103 -1.2306 13 8 2.4918 -1.8290 -1.1399 14 7 1.9708 -0.1024 -2.4319 15 6 2.5537 -0.7363 -3.6223 16 6 1.4840 -0.8076 -4.7166 17 6 0.9185 0.5929 -4.9635 18 6 -0.1259 0.5313 -6.0799 19 7 2.0032 1.4946 -5.3592 20 6 1.7351 2.8089 -5.6343 21 1 0.7239 3.1807 -5.5601 22 6 2.7630 3.6634 -6.0087 23 7 3.9954 3.2101 -6.0998 24 14 2.3971 5.4562 -6.3848 25 1 3.6555 6.1504 -6.7584 26 1 1.4335 5.5389 -7.5116 27 1 1.8114 6.1043 -5.1840 28 6 0.2646 1.1138 -3.6817 29 6 1.3201 1.2070 -2.5758 30 1 -0.3633 0.6069 0.8294 31 1 -0.3634 0.4149 -0.9402 32 1 -0.3634 -1.0216 0.1109 33 1 2.9320 0.9512 2.0450 34 1 1.2539 0.6545 2.5588 35 1 0.7499 -1.0791 4.2311 36 1 1.6274 -2.4002 6.1149 37 1 5.5398 -1.7090 4.9144 38 1 4.7796 -0.3738 2.9900 39 1 2.8890 -1.7431 -3.3730 40 1 3.3983 -0.1445 -3.9748 41 1 0.6816 -1.4730 -4.3983 42 1 1.9286 -1.1877 -5.6364 43 1 0.3398 0.1609 -6.9931 44 1 -0.9331 -0.1395 -5.7857 45 1 -0.5285 1.5288 -6.2562 46 1 2.9114 1.1605 -5.4262 47 1 4.1853 2.2791 -5.9048 48 1 -0.1585 2.1016 -3.8646 49 1 -0.5264 0.4302 -3.3731 50 1 0.8416 1.4825 -1.6360 51 1 2.0642 1.9574 -2.8431 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570381024.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:17 Heat of formation + Delta-G solvation = -45.102952 kcal Electronic energy + Delta-G solvation = -31231.041976 eV Core-core repulsion = 27130.239386 eV Total energy + Delta-G solvation = -4100.802591 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.66182 -41.11304 -39.68866 -38.56356 -36.26887 -34.68126 -34.29167 -32.86766 -32.17551 -31.45625 -30.55515 -29.19108 -27.91794 -25.97373 -25.33796 -24.44515 -24.32128 -23.60464 -22.98613 -21.24885 -19.84159 -18.87075 -18.73473 -17.92950 -17.60902 -17.46900 -16.98226 -16.65127 -16.51732 -16.36256 -15.84927 -15.79652 -15.37751 -15.19741 -15.09864 -14.82555 -14.65590 -14.47699 -14.19483 -14.15554 -13.85175 -13.54429 -13.24053 -13.20814 -12.99323 -12.80514 -12.70560 -12.58448 -12.51621 -12.36208 -12.23857 -12.13291 -11.89014 -11.73078 -11.46219 -11.08719 -10.93975 -10.81350 -10.78662 -10.51435 -10.49678 -10.11658 -9.70680 -8.97294 -8.22638 -5.16765 0.10253 0.17024 1.46005 1.62406 1.70803 1.72028 1.86080 2.59837 2.78286 3.01056 3.33506 3.52979 3.55690 3.67317 3.69447 3.73517 3.82989 3.88222 3.93342 4.00178 4.08547 4.09861 4.17321 4.21147 4.32702 4.35878 4.39443 4.55358 4.59880 4.63629 4.66292 4.68269 4.77719 4.79743 4.85836 4.94056 4.95708 4.96556 5.00777 5.10081 5.15140 5.23923 5.31508 5.33591 5.50786 5.59349 5.72491 5.78146 5.95152 6.38113 6.63003 6.97079 7.05829 7.22228 8.13223 8.26827 9.28797 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015687 B = 0.002345 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.440263 B =11938.686242 C =12603.909320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.076 3.924 3 H 0.106 0.894 4 O -0.378 6.378 5 C 0.094 3.906 6 C -0.059 4.059 7 C -0.152 4.152 8 C 0.085 3.915 9 N -0.509 5.509 10 C 0.084 3.916 11 C -0.163 4.163 12 C 0.509 3.491 13 O -0.577 6.577 14 N -0.596 5.596 15 C 0.120 3.880 16 C -0.120 4.120 17 C 0.191 3.809 18 C -0.143 4.143 19 N -0.736 5.736 20 C -0.296 4.296 21 H 0.071 0.929 22 C -0.110 4.110 23 N -0.985 5.985 24 Si 1.117 2.883 25 H -0.305 1.305 26 H -0.284 1.284 27 H -0.275 1.275 28 C -0.128 4.128 29 C 0.115 3.885 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.160 0.840 36 H 0.182 0.818 37 H 0.175 0.825 38 H 0.143 0.857 39 H 0.079 0.921 40 H 0.050 0.950 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.036 0.964 44 H 0.068 0.932 45 H 0.042 0.958 46 H 0.356 0.644 47 H 0.242 0.758 48 H 0.070 0.930 49 H 0.079 0.921 50 H 0.110 0.890 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.180 -5.401 19.109 22.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.015 3.985 3 H 0.123 0.877 4 O -0.297 6.297 5 C 0.018 3.982 6 C -0.067 4.067 7 C -0.171 4.171 8 C -0.071 4.071 9 N -0.219 5.219 10 C -0.072 4.072 11 C -0.182 4.182 12 C 0.298 3.702 13 O -0.456 6.456 14 N -0.329 5.329 15 C -0.003 4.003 16 C -0.159 4.159 17 C 0.102 3.898 18 C -0.202 4.202 19 N -0.378 5.378 20 C -0.428 4.428 21 H 0.089 0.911 22 C -0.300 4.300 23 N -0.635 5.635 24 Si 0.944 3.056 25 H -0.231 1.231 26 H -0.211 1.211 27 H -0.201 1.201 28 C -0.168 4.168 29 C -0.007 4.007 30 H 0.119 0.881 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.112 0.888 35 H 0.178 0.822 36 H 0.199 0.801 37 H 0.192 0.808 38 H 0.161 0.839 39 H 0.098 0.902 40 H 0.069 0.931 41 H 0.102 0.898 42 H 0.090 0.910 43 H 0.055 0.945 44 H 0.087 0.913 45 H 0.061 0.939 46 H 0.188 0.812 47 H 0.052 0.948 48 H 0.089 0.911 49 H 0.097 0.903 50 H 0.127 0.873 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.178 -5.132 19.422 22.085 hybrid contribution -0.040 -0.850 -0.900 1.239 sum -9.218 -5.981 18.521 21.536 Atomic orbital electron populations 1.22340 0.91041 1.04095 1.05141 1.21987 0.96909 0.96189 0.83426 0.87663 1.88076 1.87004 1.35171 1.19405 1.21628 1.01918 0.91313 0.83337 1.20233 0.94005 0.97216 0.95294 1.22370 1.02129 0.97471 0.95174 1.23255 0.91878 0.95296 0.96695 1.67693 1.04401 1.20490 1.29355 1.23116 1.00644 0.93015 0.90413 1.22331 0.96451 1.00082 0.99366 1.21015 0.78119 0.85986 0.85092 1.90656 1.47818 1.20813 1.86315 1.48082 1.56598 1.21047 1.07157 1.21402 0.95823 0.98112 0.84916 1.22019 0.98802 0.97063 0.97986 1.19799 0.88483 0.88649 0.92884 1.22116 0.98676 1.00939 0.98467 1.42699 1.05347 1.07130 1.82616 1.20158 0.95317 0.87494 1.39799 0.91067 1.26799 0.93001 1.08409 1.01834 1.70995 1.20812 1.16011 1.55680 0.82728 0.74383 0.71703 0.76740 1.23145 1.21116 1.20140 1.22204 0.97276 1.02103 0.95179 1.21846 0.95718 0.82772 1.00358 0.88140 0.89573 0.91908 0.90909 0.88804 0.82205 0.80126 0.80824 0.83873 0.90230 0.93129 0.89789 0.91005 0.94516 0.91316 0.93863 0.81160 0.94766 0.91118 0.90288 0.87253 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 9.07 71.98 0.65 -2.05 16 2 C 0.08 1.69 2.28 29.85 0.07 1.76 16 3 H 0.11 1.91 7.00 -2.39 -0.02 1.90 16 4 O -0.38 -9.35 9.55 -130.38 -1.24 -10.59 16 5 C 0.09 1.57 5.92 71.23 0.42 1.99 16 6 C -0.06 -1.10 5.55 -19.67 -0.11 -1.21 16 7 C -0.15 -2.41 9.82 22.36 0.22 -2.19 16 8 C 0.09 1.44 11.18 84.68 0.95 2.39 16 9 N -0.51 -10.77 10.36 -195.84 -2.03 -12.80 16 10 C 0.08 1.61 11.18 84.68 0.95 2.56 16 11 C -0.16 -3.11 9.82 22.36 0.22 -2.89 16 12 C 0.51 15.92 7.01 87.66 0.61 16.53 16 13 O -0.58 -22.96 15.98 15.56 0.25 -22.71 16 14 N -0.60 -18.13 2.97 -818.97 -2.43 -20.56 16 15 C 0.12 3.98 6.17 86.36 0.53 4.51 16 16 C -0.12 -3.65 4.96 30.67 0.15 -3.50 16 17 C 0.19 6.45 0.74 3.63 0.00 6.45 16 18 C -0.14 -4.58 8.44 71.98 0.61 -3.97 16 19 N -0.74 -32.22 4.13 -303.24 -1.25 -33.47 16 20 C -0.30 -14.61 8.68 84.03 0.73 -13.88 16 21 H 0.07 3.39 6.70 -2.91 -0.02 3.37 16 22 C -0.11 -5.93 5.50 84.86 0.47 -5.46 16 23 N -0.99 -59.10 13.70 21.65 0.30 -58.81 16 24 Si 1.12 49.36 29.92 68.60 2.05 51.41 16 25 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 26 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 27 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 28 C -0.13 -3.64 4.70 30.66 0.14 -3.50 16 29 C 0.11 3.22 5.32 86.35 0.46 3.68 16 30 H 0.10 1.00 8.02 -2.39 -0.02 0.98 16 31 H 0.09 1.30 6.03 -2.38 -0.01 1.28 16 32 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.07 1.09 8.05 -2.39 -0.02 1.07 16 34 H 0.09 1.01 7.98 -2.39 -0.02 0.99 16 35 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 36 H 0.18 1.91 8.06 -2.91 -0.02 1.89 16 37 H 0.17 2.43 8.06 -2.92 -0.02 2.41 16 38 H 0.14 2.40 8.06 -2.91 -0.02 2.37 16 39 H 0.08 2.71 7.00 -2.38 -0.02 2.69 16 40 H 0.05 1.89 6.94 -2.39 -0.02 1.87 16 41 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.04 1.49 7.27 -2.38 -0.02 1.48 16 46 H 0.36 17.13 5.29 -92.71 -0.49 16.64 16 47 H 0.24 14.51 6.77 -92.71 -0.63 13.88 16 48 H 0.07 2.15 7.32 -2.38 -0.02 2.13 16 49 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 50 H 0.11 2.23 4.40 -2.39 -0.01 2.22 16 51 H 0.05 1.94 7.74 -2.39 -0.02 1.92 16 Total: -1.00 -73.64 401.85 3.30 -70.34 By element: Atomic # 1 Polarization: 35.39 SS G_CDS: 0.59 Total: 35.98 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: 7.08 Total: 1.22 kcal Atomic # 7 Polarization: -120.22 SS G_CDS: -5.42 Total: -125.64 kcal Atomic # 8 Polarization: -32.31 SS G_CDS: -1.00 Total: -33.30 kcal Atomic # 14 Polarization: 49.36 SS G_CDS: 2.05 Total: 51.41 kcal Total: -73.64 3.30 -70.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570381024.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.234 kcal (2) G-P(sol) polarization free energy of solvation -73.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds